Strain Fitness in Pantoea sp. MT58 around IAI47_10650

Experiment: Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
2,251,310	+		IAI47_10645	0.25	-1.6
2,251,310	+		IAI47_10645	0.25	+2.8
2,251,310	+		IAI47_10645	0.25	+1.4
2,251,310	+		IAI47_10645	0.25	-2.1
2,251,310	+		IAI47_10645	0.25	-1.6
2,251,311	-		IAI47_10645	0.25	-0.9
2,251,311	-		IAI47_10645	0.25	-0.9
2,251,358	+		IAI47_10645	0.29	-0.2
2,251,358	+		IAI47_10645	0.29	+0.8
2,251,358	+		IAI47_10645	0.29	-1.4
2,251,359	-		IAI47_10645	0.29	+0.9
2,251,359	-		IAI47_10645	0.29	+0.7
2,251,359	-		IAI47_10645	0.29	-1.6
2,251,360	+		IAI47_10645	0.29	+0.7
2,251,360	+		IAI47_10645	0.29	+0.8
2,251,361	-		IAI47_10645	0.29	+0.5
2,251,400	+		IAI47_10645	0.32	+0.5
2,251,400	+		IAI47_10645	0.32	-0.2
2,251,400	+		IAI47_10645	0.32	+1.4
2,251,400	+		IAI47_10645	0.32	+2.1
2,251,400	+		IAI47_10645	0.32	-0.1
2,251,400	+		IAI47_10645	0.32	+1.1
2,251,400	+		IAI47_10645	0.32	-0.5
2,251,400	-		IAI47_10645	0.32	+0.9
2,251,401	-		IAI47_10645	0.33	-0.3
2,251,401	-		IAI47_10645	0.33	+0.2
2,251,401	-		IAI47_10645	0.33	+1.8
2,251,401	-		IAI47_10645	0.33	+0.6
2,251,402	+		IAI47_10645	0.33	-1.9
2,251,429	+		IAI47_10645	0.35	+1.4
2,251,429	+		IAI47_10645	0.35	+1.3
2,251,429	+		IAI47_10645	0.35	+0.4
2,251,429	+		IAI47_10645	0.35	+0.4
2,251,430	-		IAI47_10645	0.35	-1.6
2,251,430	-		IAI47_10645	0.35	+0.4
2,251,430	-		IAI47_10645	0.35	+3.1
2,251,430	-		IAI47_10645	0.35	+1.2
2,251,430	-		IAI47_10645	0.35	-1.6
2,251,460	-		IAI47_10645	0.37	-0.6
2,251,460	-		IAI47_10645	0.37	+0.8
2,251,460	-		IAI47_10645	0.37	+2.0
2,251,468	+		IAI47_10645	0.38	-1.3
2,251,468	+		IAI47_10645	0.38	-0.6
2,251,469	-		IAI47_10645	0.38	+1.8
2,251,469	-		IAI47_10645	0.38	+1.0
2,251,483	+		IAI47_10645	0.39	-1.2
2,251,484	-		IAI47_10645	0.39	-0.6
2,251,486	+		IAI47_10645	0.39	-0.9
2,251,486	+		IAI47_10645	0.39	-1.0
2,251,486	+		IAI47_10645	0.39	+0.2
2,251,486	+		IAI47_10645	0.39	+0.6
2,251,486	+		IAI47_10645	0.39	+0.9
2,251,486	+		IAI47_10645	0.39	-1.8
2,251,487	-		IAI47_10645	0.39	+1.4
2,251,487	-		IAI47_10645	0.39	+1.5
2,251,487	-		IAI47_10645	0.39	+2.1
2,251,487	-		IAI47_10645	0.39	-0.2
2,251,487	-		IAI47_10645	0.39	-0.2
2,251,537	+		IAI47_10645	0.43	-0.6
2,251,537	+		IAI47_10645	0.43	-0.5
2,251,538	-		IAI47_10645	0.43	+0.2
2,251,538	-		IAI47_10645	0.43	+1.5
2,251,538	-		IAI47_10645	0.43	+1.9
2,251,538	-		IAI47_10645	0.43	-2.1
2,251,624	+		IAI47_10645	0.50	+0.6
2,251,624	+		IAI47_10645	0.50	+0.1
2,251,624	+		IAI47_10645	0.50	+1.0
2,251,657	+		IAI47_10645	0.53	+1.4
2,251,657	+		IAI47_10645	0.53	+1.1
2,251,657	+		IAI47_10645	0.53	-0.6
2,251,657	+		IAI47_10645	0.53	-1.0
2,251,658	-		IAI47_10645	0.53	-0.6
2,251,658	-		IAI47_10645	0.53	+0.4
2,251,658	-		IAI47_10645	0.53	-3.2
2,251,687	+		IAI47_10645	0.55	+0.3
2,251,687	+		IAI47_10645	0.55	+1.4
2,251,687	+		IAI47_10645	0.55	-0.6
2,251,687	+		IAI47_10645	0.55	-2.3
2,251,688	-		IAI47_10645	0.55	-1.6
2,251,688	-		IAI47_10645	0.55	-0.2
2,251,688	-		IAI47_10645	0.55	+1.1
2,251,688	-		IAI47_10645	0.55	+0.2
2,251,688	-		IAI47_10645	0.55	+3.1
2,251,718	-		IAI47_10645	0.58	+1.3
2,251,891	+		IAI47_10645	0.72	-0.9
2,251,892	-		IAI47_10645	0.72	+0.4
2,251,892	-		IAI47_10645	0.72	-1.6
2,251,892	-		IAI47_10645	0.72	-1.3
2,251,918	+		IAI47_10645	0.74	-0.2
2,251,936	+		IAI47_10645	0.75	+1.4
2,251,937	-		IAI47_10645	0.75	+0.5
2,251,937	-		IAI47_10645	0.75	+0.7
2,251,954	+		IAI47_10645	0.77	+0.7
2,251,955	-		IAI47_10645	0.77	+1.4
2,251,958	+		IAI47_10645	0.77	+0.7
2,251,958	+		IAI47_10645	0.77	+0.8
2,251,958	+		IAI47_10645	0.77	-1.8
2,251,958	+		IAI47_10645	0.77	+0.3
2,251,958	+		IAI47_10645	0.77	+1.3
2,251,959	-		IAI47_10645	0.77	+1.6
2,251,959	-		IAI47_10645	0.77	-2.3
2,251,959	-		IAI47_10645	0.77	+1.2
2,251,993	+		IAI47_10645	0.80	+0.4
2,251,993	+		IAI47_10645	0.80	-1.2
2,251,993	+		IAI47_10645	0.80	+1.0
2,251,994	-		IAI47_10645	0.80	+0.2
2,251,994	-		IAI47_10645	0.80	-0.5
2,251,994	-		IAI47_10645	0.80	-1.4
2,251,994	-		IAI47_10645	0.80	+0.3
2,252,006	+		IAI47_10645	0.81	-2.3
2,252,006	+		IAI47_10645	0.81	-0.4
2,252,006	+		IAI47_10645	0.81	+0.7
2,252,006	+		IAI47_10645	0.81	-0.5
2,252,006	+		IAI47_10645	0.81	+0.4
2,252,006	+		IAI47_10645	0.81	+0.9
2,252,006	+		IAI47_10645	0.81	+0.2
2,252,006	+		IAI47_10645	0.81	+1.6
2,252,006	+		IAI47_10645	0.81	-0.5
2,252,006	+		IAI47_10645	0.81	-0.2
2,252,006	+		IAI47_10645	0.81	-0.9
2,252,006	+		IAI47_10645	0.81	-2.7
2,252,006	+		IAI47_10645	0.81	+1.1
2,252,006	+		IAI47_10645	0.81	-0.7
2,252,006	+		IAI47_10645	0.81	-0.4
2,252,006	+		IAI47_10645	0.81	-1.4
2,252,006	+		IAI47_10645	0.81	+0.7
2,252,006	+		IAI47_10645	0.81	+0.2
2,252,006	+		IAI47_10645	0.81	+0.4
2,252,006	+		IAI47_10645	0.81	+1.7
2,252,007	-		IAI47_10645	0.81	+0.9
2,252,007	-		IAI47_10645	0.81	+2.4
2,252,007	-		IAI47_10645	0.81	+0.5
2,252,007	-		IAI47_10645	0.81	+0.7
2,252,007	-		IAI47_10645	0.81	+2.6
2,252,007	-		IAI47_10645	0.81	+0.8
2,252,007	-		IAI47_10645	0.81	+3.0
2,252,007	-		IAI47_10645	0.81	-0.8
2,252,007	-		IAI47_10645	0.81	-1.3
2,252,007	-		IAI47_10645	0.81	+0.4
2,252,007	-		IAI47_10645	0.81	+1.9
2,252,007	-		IAI47_10645	0.81	+0.1
2,252,007	-		IAI47_10645	0.81	+1.4
2,252,007	-		IAI47_10645	0.81	-2.8
2,252,007	-		IAI47_10645	0.81	-2.5
2,252,008	+		IAI47_10645	0.81	+0.8
2,252,009	-		IAI47_10645	0.81	+0.7
2,252,009	-		IAI47_10645	0.81	+0.1
2,252,016	+		IAI47_10645	0.81	+3.2
2,252,017	-		IAI47_10645	0.82	-1.4
2,252,017	-		IAI47_10645	0.82	-0.6
2,252,060	+		IAI47_10645	0.85	-1.2
2,252,060	+		IAI47_10645	0.85	-1.4
2,252,060	+		IAI47_10645	0.85	-2.1
2,252,060	+		IAI47_10645	0.85	+0.7
2,252,060	+		IAI47_10645	0.85	+2.0
2,252,061	-		IAI47_10645	0.85	-0.1
2,252,061	-		IAI47_10645	0.85	-0.5
2,252,093	+		IAI47_10645	0.88	+0.8
2,252,101	+		IAI47_10645	0.88	-1.9
2,252,102	-		IAI47_10645	0.88	+1.2
2,252,102	-		IAI47_10645	0.88	+3.0
2,252,123	+				+1.8
2,252,123	+				+0.8
2,252,123	+				-0.0
2,252,124	-				+2.0
2,252,124	-				-2.1
2,252,124	-				-0.4
2,252,124	-				-0.7
2,252,125	+				-0.7
2,252,125	+				+0.5
2,252,125	+				+0.4
2,252,125	+				+2.2
2,252,125	+				+1.4
2,252,125	+				+1.2
2,252,125	+				-2.2
2,252,125	+				-0.9
2,252,125	+				-1.2
2,252,125	+				-0.3
2,252,125	+				-1.4
2,252,125	+				+1.0
2,252,125	+				+1.2
2,252,125	+				+0.5
2,252,125	+				+0.1
2,252,125	+				-2.2
2,252,125	+				-1.4
2,252,126	-				+0.1
2,252,126	-				+1.2
2,252,126	-				-0.6
2,252,126	-				+0.2
2,252,126	-				+2.3
2,252,126	-				+0.4
2,252,126	-				-2.1
2,252,129	+				+1.7
2,252,129	+				-1.6
2,252,129	+				+0.2
2,252,129	+				+0.5
2,252,129	+				-0.1
2,252,129	+				-0.9
2,252,129	+				+0.4
2,252,129	+				-1.2
2,252,130	-				-0.6
2,252,130	-				+0.9
2,252,130	-				-0.9
2,252,130	-				+1.7
2,252,130	-				-0.6
2,252,130	-				+2.1
2,252,136	+				+0.8
2,252,137	-				+0.5
2,252,137	-				-0.9
2,252,162	+				+1.2
2,252,241	+				+0.5
2,252,241	+				+1.0
2,252,241	+				-2.6
2,252,241	+				-0.6
2,252,241	+				-1.9
2,252,242	-				+1.6
2,252,286	-				-0.7
2,252,286	-				-1.6
2,252,288	+				-0.3
2,252,294	+				-2.3
2,252,294	+				+0.9
2,252,294	+				-2.5
2,252,294	+				-0.3
2,252,295	-				-2.2
2,252,295	-				-1.8
2,252,295	-				+1.4
2,252,298	+				+0.4
2,252,298	+				-0.8
2,252,298	+				+0.5
2,252,298	+				-1.8
2,252,298	+				-3.1
2,252,299	-				+3.2
2,252,299	-				-1.2
2,252,305	+				-2.3
2,252,305	+				+0.2
2,252,305	+				-0.9
2,252,323	+				-0.7
2,252,323	+				-2.8
2,252,323	+				-2.9
2,252,324	-				-1.0
2,252,324	-				-0.6
2,252,324	-				-0.2
2,252,324	-				-0.8
2,252,324	-				-1.0
2,252,401	+		IAI47_10650	0.33	-0.3
2,252,402	-		IAI47_10650	0.33	-2.1
2,252,402	-		IAI47_10650	0.33	+1.9
2,252,402	-		IAI47_10650	0.33	-0.1
2,252,402	-		IAI47_10650	0.33	+0.5
2,252,516	+		IAI47_10650	0.72	-1.8
2,252,516	+		IAI47_10650	0.72	-3.9
2,252,516	+		IAI47_10650	0.72	-1.6
2,252,516	+		IAI47_10650	0.72	-0.7
2,252,516	+		IAI47_10650	0.72	+0.2
2,252,516	+		IAI47_10650	0.72	-1.0
2,252,517	-		IAI47_10650	0.72	+0.3
2,252,517	-		IAI47_10650	0.72	+1.6
2,252,517	-		IAI47_10650	0.72	+1.4
2,252,546	+		IAI47_10650	0.82	+0.8
2,252,547	-		IAI47_10650	0.83	-2.9
2,252,565	+		IAI47_10650	0.89	+0.6
2,252,565	+		IAI47_10650	0.89	-0.5
2,252,566	-		IAI47_10650	0.89	-0.4
2,252,599	+				+2.0
2,252,599	+				-0.7
2,252,599	+				+0.8
2,252,599	+				+0.4
2,252,599	+				-0.6
2,252,600	-				+0.8
2,252,600	-				-1.9
2,252,600	-				+1.5
2,252,600	-				-0.1
2,252,600	-				-0.2
2,252,600	-				+0.8
2,252,600	-				+1.4
2,252,600	-				+0.0
2,252,600	-				-1.1
2,252,600	-				-0.2
2,252,600	-				-0.1
2,252,639	+				-0.8
2,252,660	+				+1.6
2,252,660	+				+1.9
2,252,661	-				+0.8
2,252,661	-				-2.9
2,252,666	+				-1.4
2,252,666	+				+1.4
2,252,666	+				+2.2
2,252,666	+				+0.9
2,252,666	+				-0.2
2,252,667	-				+0.5
2,252,667	-				+0.6
2,252,667	-				+0.5
2,252,668	+				+1.9
2,252,748	+				+1.9
2,252,748	+				+2.4
2,252,749	-				+0.9
2,252,749	-				+1.8
2,252,759	-				-0.4
2,252,759	-				+1.4
2,252,759	-				-0.3
2,252,800	+				-1.4
2,252,800	+				-0.6
2,252,800	+				+1.1
2,252,800	+				+0.9
2,252,800	+				-0.7
2,252,800	+				-0.9
2,252,800	+				+0.3
2,252,800	+				+1.0
2,252,801	-				+2.0
2,252,801	-				+0.5
2,252,801	-				-0.2
2,252,801	-				+1.3
2,252,801	-				+1.2
2,252,801	-				+1.5
2,252,801	-				-2.1
2,252,801	-				-0.9
2,252,805	+				-0.9
2,252,805	+				+0.0
2,252,806	-				+0.4
2,252,806	-				-0.9
2,252,811	+				+0.4
2,252,811	+				-1.2
2,252,811	+				-2.6
2,252,812	-				+0.5
2,252,812	-				-2.2
2,252,820	+				-2.2
2,252,821	-				-2.2
2,252,821	-				-0.6
2,252,863	-				-0.6
2,252,940	+				+0.9
2,252,941	-				-1.3
2,252,956	+				+1.1
2,252,956	+				+1.6
2,252,956	+				-1.3
2,252,956	+				+1.2
2,252,957	-				-0.8
2,252,957	-				+1.6
2,252,957	-				+2.1
2,252,957	-				+2.8
2,252,997	+				-0.2
2,252,997	-				+1.3
2,252,998	-				+0.3
2,252,998	-				+1.4
2,252,998	-				+0.6
2,253,008	+				+0.4
2,253,008	+				-1.8
2,253,045	-				+0.7
2,253,138	-				+1.2
2,253,315	+		IAI47_10655	0.16	+1.8
2,253,316	-		IAI47_10655	0.16	-1.2
2,253,316	-		IAI47_10655	0.16	-1.2
2,253,364	+		IAI47_10655	0.19	-0.0
2,253,369	+		IAI47_10655	0.19	-0.3
2,253,369	+		IAI47_10655	0.19	+1.6
2,253,369	+		IAI47_10655	0.19	+0.4
2,253,369	+		IAI47_10655	0.19	+1.4
2,253,369	+		IAI47_10655	0.19	-1.2
2,253,369	+		IAI47_10655	0.19	-0.8
2,253,369	+		IAI47_10655	0.19	-2.3
2,253,370	-		IAI47_10655	0.19	-0.8
2,253,370	-		IAI47_10655	0.19	+2.8
2,253,370	-		IAI47_10655	0.19	-1.1
2,253,370	-		IAI47_10655	0.19	-0.8
2,253,370	-		IAI47_10655	0.19	+1.0
2,253,392	+		IAI47_10655	0.21	+1.6
2,253,392	+		IAI47_10655	0.21	+1.4
2,253,392	+		IAI47_10655	0.21	-1.2
2,253,393	-		IAI47_10655	0.21	-0.6
2,253,393	-		IAI47_10655	0.21	+0.7
2,253,393	-		IAI47_10655	0.21	-2.8
2,253,393	-		IAI47_10655	0.21	+0.7
2,253,393	-		IAI47_10655	0.21	+1.9
2,253,511	-		IAI47_10655	0.27	+1.7
2,253,528	+		IAI47_10655	0.28	+1.1
2,253,528	+		IAI47_10655	0.28	-1.9
2,253,529	-		IAI47_10655	0.28	+0.2
2,253,529	-		IAI47_10655	0.28	+0.5
2,253,529	-		IAI47_10655	0.28	-2.9
2,253,529	-		IAI47_10655	0.28	-0.4
2,253,529	-		IAI47_10655	0.28	-0.2
2,253,529	-		IAI47_10655	0.28	+0.4
2,253,546	+		IAI47_10655	0.29	-1.6