Strain Fitness in Pantoea sp. MT58 around IAI47_09425

Experiment: Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
1,988,712	-		IAI47_09420	0.13	+0.3
1,988,891	+		IAI47_09420	0.30	-0.1
1,988,904	+		IAI47_09420	0.31	+1.9
1,988,904	+		IAI47_09420	0.31	+2.7
1,988,904	+		IAI47_09420	0.31	-1.5
1,988,904	+		IAI47_09420	0.31	+1.1
1,988,904	+		IAI47_09420	0.31	-1.1
1,988,904	+		IAI47_09420	0.31	-1.3
1,988,904	+		IAI47_09420	0.31	+2.1
1,988,905	-		IAI47_09420	0.31	+0.3
1,988,905	-		IAI47_09420	0.31	+1.5
1,988,905	-		IAI47_09420	0.31	+1.3
1,988,905	-		IAI47_09420	0.31	-1.7
1,988,905	-		IAI47_09420	0.31	+5.2
1,988,954	-		IAI47_09420	0.36	+2.5
1,988,999	+		IAI47_09420	0.40	-0.7
1,988,999	+		IAI47_09420	0.40	+4.7
1,988,999	+		IAI47_09420	0.40	-1.1
1,989,000	-		IAI47_09420	0.40	+0.4
1,989,000	-		IAI47_09420	0.40	-1.5
1,989,000	-		IAI47_09420	0.40	+2.3
1,989,145	+		IAI47_09420	0.54	-0.3
1,989,145	+		IAI47_09420	0.54	-0.6
1,989,145	+		IAI47_09420	0.54	-2.8
1,989,146	-		IAI47_09420	0.54	-1.0
1,989,146	-		IAI47_09420	0.54	-0.9
1,989,146	-		IAI47_09420	0.54	-3.7
1,989,146	-		IAI47_09420	0.54	+0.3
1,989,146	-		IAI47_09420	0.54	+0.6
1,989,255	+		IAI47_09420	0.64	+2.2
1,989,256	-		IAI47_09420	0.64	+0.2
1,989,276	+		IAI47_09420	0.66	-0.3
1,989,277	-		IAI47_09420	0.66	-1.7
1,989,308	+		IAI47_09420	0.69	-0.1
1,989,310	+		IAI47_09420	0.69	+2.3
1,989,310	+		IAI47_09420	0.69	+1.3
1,989,310	+		IAI47_09420	0.69	-2.1
1,989,310	+		IAI47_09420	0.69	+0.7
1,989,310	+		IAI47_09420	0.69	+1.9
1,989,310	+		IAI47_09420	0.69	+0.6
1,989,310	+		IAI47_09420	0.69	+0.2
1,989,310	+		IAI47_09420	0.69	+1.3
1,989,311	-		IAI47_09420	0.70	+2.3
1,989,311	-		IAI47_09420	0.70	+1.3
1,989,311	-		IAI47_09420	0.70	-0.9
1,989,311	-		IAI47_09420	0.70	-0.4
1,989,328	+		IAI47_09420	0.71	+0.3
1,989,328	+		IAI47_09420	0.71	+1.5
1,989,329	-		IAI47_09420	0.71	+1.8
1,989,549	+				+1.1
1,989,650	+				-2.6
1,989,650	+				+1.2
1,989,650	+				-0.5
1,989,650	+				-1.7
1,989,650	+				-1.4
1,989,651	-				-0.9
1,989,651	-				+2.8
1,989,671	+				+2.3
1,989,672	-				-1.7
1,989,748	+				+0.5
1,989,748	+				-0.3
1,989,749	-				+1.6
1,989,749	-				+0.3
1,989,799	+				+0.3
1,989,832	+		IAI47_09425	0.11	-2.0
1,989,832	+		IAI47_09425	0.11	+2.2
1,989,832	+		IAI47_09425	0.11	+2.7
1,989,833	-		IAI47_09425	0.11	+0.0
1,989,833	-		IAI47_09425	0.11	+0.4
1,989,833	-		IAI47_09425	0.11	-0.4
1,989,833	-		IAI47_09425	0.11	+0.9
1,989,833	-		IAI47_09425	0.11	-0.5
1,989,833	-		IAI47_09425	0.11	-0.3
1,989,833	-		IAI47_09425	0.11	+0.7
1,989,833	-		IAI47_09425	0.11	-0.4
1,989,833	-		IAI47_09425	0.11	-0.9
1,989,833	-		IAI47_09425	0.11	-0.1
1,989,833	-		IAI47_09425	0.11	+1.1
1,989,833	-		IAI47_09425	0.11	+3.8
1,989,833	-		IAI47_09425	0.11	+2.8
1,989,861	+		IAI47_09425	0.13	+1.8
1,989,861	+		IAI47_09425	0.13	+1.3
1,989,861	+		IAI47_09425	0.13	+1.4
1,989,861	+		IAI47_09425	0.13	-1.7
1,989,862	-		IAI47_09425	0.13	-2.0
1,989,862	-		IAI47_09425	0.13	-0.7
1,989,862	-		IAI47_09425	0.13	-2.0
1,989,891	+		IAI47_09425	0.15	-2.2
1,989,892	-		IAI47_09425	0.15	+0.9
1,989,892	-		IAI47_09425	0.15	-2.5
1,989,892	-		IAI47_09425	0.15	+0.7
1,989,912	+		IAI47_09425	0.17	+3.3
1,989,912	+		IAI47_09425	0.17	+0.7
1,989,912	+		IAI47_09425	0.17	-1.3
1,989,913	-		IAI47_09425	0.17	-2.8
1,989,913	-		IAI47_09425	0.17	+1.3
1,989,980	-		IAI47_09425	0.21	-1.3
1,990,007	+		IAI47_09425	0.23	+0.9
1,990,007	+		IAI47_09425	0.23	+0.1
1,990,016	+		IAI47_09425	0.24	+2.0
1,990,017	-		IAI47_09425	0.24	+0.1
1,990,017	-		IAI47_09425	0.24	+1.2
1,990,017	-		IAI47_09425	0.24	+1.9
1,990,017	-		IAI47_09425	0.24	+0.1
1,990,121	-		IAI47_09425	0.31	-1.5
1,990,180	+		IAI47_09425	0.35	+0.0
1,990,181	-		IAI47_09425	0.36	-0.1
1,990,202	+		IAI47_09425	0.37	-1.5
1,990,202	+		IAI47_09425	0.37	+0.6
1,990,203	-		IAI47_09425	0.37	+1.3
1,990,231	+		IAI47_09425	0.39	-1.3
1,990,268	-		IAI47_09425	0.42	-1.7
1,990,318	+		IAI47_09425	0.45	-0.3
1,990,319	-		IAI47_09425	0.45	+1.6
1,990,319	-		IAI47_09425	0.45	-1.0
1,990,322	+		IAI47_09425	0.45	-0.5
1,990,322	+		IAI47_09425	0.45	+3.4
1,990,322	+		IAI47_09425	0.45	-2.3
1,990,322	+		IAI47_09425	0.45	-2.1
1,990,322	+		IAI47_09425	0.45	+1.2
1,990,322	+		IAI47_09425	0.45	-1.2
1,990,322	+		IAI47_09425	0.45	+0.5
1,990,322	+		IAI47_09425	0.45	+0.2
1,990,322	+		IAI47_09425	0.45	+0.7
1,990,323	-		IAI47_09425	0.46	+0.3
1,990,323	-		IAI47_09425	0.46	+1.6
1,990,323	-		IAI47_09425	0.46	+1.3
1,990,323	-		IAI47_09425	0.46	+1.9
1,990,323	-		IAI47_09425	0.46	-0.1
1,990,323	-		IAI47_09425	0.46	-1.3
1,990,324	+		IAI47_09425	0.46	+1.3
1,990,324	+		IAI47_09425	0.46	+0.5
1,990,324	+		IAI47_09425	0.46	-1.7
1,990,324	+		IAI47_09425	0.46	+0.9
1,990,324	+		IAI47_09425	0.46	-0.9
1,990,324	+		IAI47_09425	0.46	+0.7
1,990,324	+		IAI47_09425	0.46	-1.9
1,990,324	+		IAI47_09425	0.46	+1.9
1,990,325	-		IAI47_09425	0.46	-0.2
1,990,325	-		IAI47_09425	0.46	-1.5
1,990,325	-		IAI47_09425	0.46	+1.3
1,990,325	-		IAI47_09425	0.46	+0.7
1,990,325	-		IAI47_09425	0.46	-0.9
1,990,325	-		IAI47_09425	0.46	-0.3
1,990,325	-		IAI47_09425	0.46	+0.2
1,990,334	-		IAI47_09425	0.46	+0.1
1,990,334	-		IAI47_09425	0.46	-0.3
1,990,334	-		IAI47_09425	0.46	+1.9
1,990,338	+		IAI47_09425	0.47	+0.7
1,990,377	+		IAI47_09425	0.49	-0.5
1,990,377	+		IAI47_09425	0.49	-1.2
1,990,377	+		IAI47_09425	0.49	-0.1
1,990,402	+		IAI47_09425	0.51	+1.3
1,990,402	+		IAI47_09425	0.51	-1.0
1,990,402	+		IAI47_09425	0.51	+1.0
1,990,402	+		IAI47_09425	0.51	-1.0
1,990,402	+		IAI47_09425	0.51	+2.3
1,990,402	+		IAI47_09425	0.51	+2.9
1,990,402	+		IAI47_09425	0.51	+2.5
1,990,402	+		IAI47_09425	0.51	+0.2
1,990,402	+		IAI47_09425	0.51	-0.9
1,990,402	+		IAI47_09425	0.51	-0.1
1,990,403	-		IAI47_09425	0.51	-0.7
1,990,403	-		IAI47_09425	0.51	-0.8
1,990,403	-		IAI47_09425	0.51	+2.2
1,990,403	-		IAI47_09425	0.51	+0.7
1,990,403	-		IAI47_09425	0.51	+2.7
1,990,403	-		IAI47_09425	0.51	-1.7
1,990,403	-		IAI47_09425	0.51	+0.8
1,990,410	+		IAI47_09425	0.52	-1.5
1,990,411	-		IAI47_09425	0.52	+0.9
1,990,411	-		IAI47_09425	0.52	-0.9
1,990,427	+		IAI47_09425	0.53	+0.9
1,990,428	-		IAI47_09425	0.53	-1.8
1,990,456	+		IAI47_09425	0.55	+0.8
1,990,457	-		IAI47_09425	0.55	+1.5
1,990,546	+		IAI47_09425	0.61	-1.5
1,990,569	+		IAI47_09425	0.63	+0.6
1,990,606	+		IAI47_09425	0.65	+0.9
1,990,631	-		IAI47_09425	0.67	-1.4
1,990,675	+		IAI47_09425	0.70	+1.3
1,990,675	+		IAI47_09425	0.70	-2.3
1,990,675	+		IAI47_09425	0.70	+1.5
1,990,677	+		IAI47_09425	0.70	-2.3
1,990,677	+		IAI47_09425	0.70	+0.3
1,990,678	-		IAI47_09425	0.71	+1.1
1,990,678	-		IAI47_09425	0.71	+0.3
1,990,678	-		IAI47_09425	0.71	+2.8
1,990,702	+		IAI47_09425	0.72	-1.3
1,990,703	-		IAI47_09425	0.72	+1.5
1,990,704	+		IAI47_09425	0.72	-2.1
1,990,704	+		IAI47_09425	0.72	+3.9
1,990,704	+		IAI47_09425	0.72	+2.3
1,990,705	-		IAI47_09425	0.72	-0.7
1,990,795	+		IAI47_09425	0.79	+0.2
1,990,795	+		IAI47_09425	0.79	-0.5
1,990,796	-		IAI47_09425	0.79	-1.3
1,990,796	-		IAI47_09425	0.79	-2.0
1,990,797	+		IAI47_09425	0.79	+0.5
1,990,797	+		IAI47_09425	0.79	+0.4
1,990,797	+		IAI47_09425	0.79	-3.1
1,990,797	+		IAI47_09425	0.79	-0.4
1,990,797	+		IAI47_09425	0.79	-0.8
1,990,797	+		IAI47_09425	0.79	-0.3
1,990,797	+		IAI47_09425	0.79	+0.7
1,990,797	+		IAI47_09425	0.79	+0.7
1,990,798	-		IAI47_09425	0.79	+2.3
1,990,798	-		IAI47_09425	0.79	+0.0
1,990,798	-		IAI47_09425	0.79	+0.0
1,990,798	-		IAI47_09425	0.79	+0.3
1,990,798	-		IAI47_09425	0.79	-2.3
1,990,803	+		IAI47_09425	0.79	-0.4
1,990,803	+		IAI47_09425	0.79	-1.4
1,990,804	-		IAI47_09425	0.79	+1.0
1,990,863	-		IAI47_09425	0.84	-0.5
1,990,863	-		IAI47_09425	0.84	+0.2
1,990,890	+		IAI47_09425	0.85	+2.4
1,990,891	-		IAI47_09425	0.86	-1.0
1,990,891	-		IAI47_09425	0.86	+2.1
1,990,898	-		IAI47_09425	0.86	-1.0
1,990,905	+		IAI47_09425	0.87	-1.5
1,990,906	-		IAI47_09425	0.87	-0.9
1,990,938	-		IAI47_09425	0.89	+2.5
1,990,942	+		IAI47_09425	0.89	-1.0
1,990,961	-				-1.3
1,990,968	+				-2.0
1,990,969	-				+2.1
1,990,969	-				-1.3
1,990,990	+				-0.4
1,990,991	-				-0.9
1,990,992	+				-0.1
1,990,992	+				+0.3
1,990,992	+				-1.3
1,990,993	-				-0.7
1,990,993	-				-1.9
1,990,999	-				+1.3
1,990,999	-				+0.1
1,991,010	+				-0.4
1,991,011	-				+1.7
1,991,011	-				-1.0
1,991,022	+				-1.7
1,991,022	+				-0.7
1,991,022	+				+0.4
1,991,022	+				+0.8
1,991,022	+				+0.1
1,991,023	-				-0.3
1,991,023	-				-0.0
1,991,023	-				+2.3
1,991,036	+				-1.5
1,991,037	-				+0.9
1,991,037	-				+0.6
1,991,037	-				-1.3
1,991,062	+				+2.2
1,991,062	+				+0.2
1,991,063	-				-0.8
1,991,063	-				+0.3
1,991,063	-				+1.0
1,991,063	-				+1.9
1,991,168	+				+0.7
1,991,197	+				+2.0
1,991,198	-				-2.5
1,991,200	-				+1.1
1,991,226	+				-3.7
1,991,226	+				-1.7
1,991,226	+				-1.6
1,991,226	+				+1.0
1,991,227	-				+0.1
1,991,227	-				+1.7
1,991,241	+		IAI47_09430	0.10	+1.0
1,991,241	+		IAI47_09430	0.10	+2.4
1,991,241	+		IAI47_09430	0.10	+1.3
1,991,242	-		IAI47_09430	0.10	+0.7
1,991,242	-		IAI47_09430	0.10	+0.6
1,991,242	-		IAI47_09430	0.10	+3.9
1,991,242	-		IAI47_09430	0.10	-1.0
1,991,242	-		IAI47_09430	0.10	-1.3
1,991,250	-		IAI47_09430	0.11	-1.7
1,991,367	+		IAI47_09430	0.23	+0.0
1,991,368	-		IAI47_09430	0.24	+1.7
1,991,368	-		IAI47_09430	0.24	-0.7
1,991,369	+		IAI47_09430	0.24	-0.3
1,991,369	+		IAI47_09430	0.24	+0.7
1,991,369	+		IAI47_09430	0.24	-2.0
1,991,369	+		IAI47_09430	0.24	-1.4
1,991,370	-		IAI47_09430	0.24	-1.1
1,991,370	-		IAI47_09430	0.24	+0.3
1,991,404	-		IAI47_09430	0.27	+0.1
1,991,404	-		IAI47_09430	0.27	+0.7
1,991,404	-		IAI47_09430	0.27	+0.2
1,991,486	-		IAI47_09430	0.36	+0.0
1,991,516	-		IAI47_09430	0.39	+0.2
1,991,516	-		IAI47_09430	0.39	-1.5
1,991,517	+		IAI47_09430	0.39	+0.1
1,991,518	-		IAI47_09430	0.39	+1.8
1,991,528	-		IAI47_09430	0.40	+1.1
1,991,551	+		IAI47_09430	0.43	+0.6
1,991,551	+		IAI47_09430	0.43	+2.5
1,991,552	-		IAI47_09430	0.43	-2.6
1,991,566	+		IAI47_09430	0.44	-0.3
1,991,566	+		IAI47_09430	0.44	-0.7
1,991,593	+		IAI47_09430	0.47	-0.8
1,991,593	+		IAI47_09430	0.47	+0.2
1,991,671	+		IAI47_09430	0.55	-0.9
1,991,672	-		IAI47_09430	0.56	-3.3
1,991,672	-		IAI47_09430	0.56	-0.3
1,991,740	+		IAI47_09430	0.63	+0.6
1,991,740	+		IAI47_09430	0.63	-2.3
1,991,744	+		IAI47_09430	0.63	+0.2
1,991,745	-		IAI47_09430	0.63	-0.8
1,991,745	-		IAI47_09430	0.63	-1.7
1,991,752	+		IAI47_09430	0.64	+0.6
1,991,752	+		IAI47_09430	0.64	+0.5
1,991,753	-		IAI47_09430	0.64	-1.0
1,991,792	-		IAI47_09430	0.68	+1.1
1,991,822	+		IAI47_09430	0.71	-0.3
1,991,822	+		IAI47_09430	0.71	-0.4
1,991,822	+		IAI47_09430	0.71	-1.7
1,991,822	+		IAI47_09430	0.71	-0.3
1,991,823	-		IAI47_09430	0.71	-0.3
1,991,823	-		IAI47_09430	0.71	-1.0
1,991,823	-		IAI47_09430	0.71	-0.7
1,991,823	-		IAI47_09430	0.71	+1.8
1,991,823	-		IAI47_09430	0.71	+0.3
1,991,823	-		IAI47_09430	0.71	+0.3
1,991,823	-		IAI47_09430	0.71	+1.0
1,991,896	+		IAI47_09430	0.79	-0.7
1,991,896	+		IAI47_09430	0.79	+0.8
1,991,966	-		IAI47_09430	0.86	-1.5
1,991,980	+		IAI47_09430	0.88	-2.8
1,991,981	-		IAI47_09430	0.88	+0.0
1,991,981	-		IAI47_09430	0.88	-2.9
1,991,984	+		IAI47_09430	0.88	-1.3
1,991,984	+		IAI47_09430	0.88	-2.0
1,991,984	+		IAI47_09430	0.88	-0.3
1,991,985	-		IAI47_09430	0.88	+0.9
1,991,985	-		IAI47_09430	0.88	+0.0
1,991,985	-		IAI47_09430	0.88	+2.1
1,992,069	-				+1.0