Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS23815

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS23805 and BWI76_RS23810 are separated by 5 nucleotidesBWI76_RS23810 and BWI76_RS23815 are separated by 22 nucleotidesBWI76_RS23815 and BWI76_RS23820 are separated by 121 nucleotidesBWI76_RS23820 and BWI76_RS23825 are separated by 8 nucleotides BWI76_RS23805: BWI76_RS23805 - ssDNA exonuclease RecJ, at 4,969,297 to 4,971,030 _RS23805 BWI76_RS23810: BWI76_RS23810 - bifunctional protein-disulfide isomerase/oxidoreductase DsbC, at 4,971,036 to 4,971,749 _RS23810 BWI76_RS23815: BWI76_RS23815 - site-specific tyrosine recombinase XerD, at 4,971,772 to 4,972,668 _RS23815 BWI76_RS23820: BWI76_RS23820 - flavodoxin FldB, at 4,972,790 to 4,973,311 _RS23820 BWI76_RS23825: BWI76_RS23825 - hypothetical protein, at 4,973,320 to 4,973,730 _RS23825 Position (kb) 4971 4972 4973Strain fitness (log2 ratio) -2 -1 0 1at 4970.820 kb on - strand, within BWI76_RS23805at 4970.866 kb on + strandat 4970.879 kb on - strandat 4970.879 kb on - strandat 4971.158 kb on + strand, within BWI76_RS23810at 4971.385 kb on - strand, within BWI76_RS23810at 4971.469 kb on + strandat 4971.702 kb on + strandat 4971.711 kb on - strandat 4971.838 kb on - strandat 4971.856 kb on + strandat 4971.972 kb on + strand, within BWI76_RS23815at 4972.185 kb on + strand, within BWI76_RS23815at 4972.742 kb on + strandat 4972.866 kb on + strand, within BWI76_RS23820at 4973.138 kb on + strand, within BWI76_RS23820at 4973.139 kb on + strand, within BWI76_RS23820at 4973.508 kb on + strand, within BWI76_RS23825at 4973.516 kb on - strand, within BWI76_RS23825at 4973.573 kb on + strand, within BWI76_RS23825at 4973.581 kb on - strand, within BWI76_RS23825at 4973.602 kb on + strand, within BWI76_RS23825at 4973.606 kb on - strand, within BWI76_RS23825at 4973.613 kb on + strand, within BWI76_RS23825at 4973.623 kb on - strand, within BWI76_RS23825at 4973.635 kb on - strand, within BWI76_RS23825

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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4,970,820 - BWI76_RS23805 0.88 -0.2
4,970,866 + -0.0
4,970,879 - -0.1
4,970,879 - -0.9
4,971,158 + BWI76_RS23810 0.17 -0.5
4,971,385 - BWI76_RS23810 0.49 -0.1
4,971,469 + -0.5
4,971,702 + +0.5
4,971,711 - +0.9
4,971,838 - -1.7
4,971,856 + -0.5
4,971,972 + BWI76_RS23815 0.22 -1.1
4,972,185 + BWI76_RS23815 0.46 -2.7
4,972,742 + +0.3
4,972,866 + BWI76_RS23820 0.15 -0.3
4,973,138 + BWI76_RS23820 0.67 +0.5
4,973,139 + BWI76_RS23820 0.67 -0.6
4,973,508 + BWI76_RS23825 0.46 +0.2
4,973,516 - BWI76_RS23825 0.48 +0.2
4,973,573 + BWI76_RS23825 0.62 -0.2
4,973,581 - BWI76_RS23825 0.64 +0.2
4,973,602 + BWI76_RS23825 0.69 +0.9
4,973,606 - BWI76_RS23825 0.70 +0.2
4,973,613 + BWI76_RS23825 0.71 -0.5
4,973,623 - BWI76_RS23825 0.74 +1.1
4,973,635 - BWI76_RS23825 0.77 -0.6

Or see this region's nucleotide sequence