Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS21335

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS21330 and BWI76_RS21335 are separated by 14 nucleotidesBWI76_RS21335 and BWI76_RS21340 are separated by 184 nucleotidesBWI76_RS21340 and BWI76_RS21345 overlap by 4 nucleotides BWI76_RS21330: BWI76_RS21330 - S26 family signal peptidase, at 4,465,005 to 4,465,979 _RS21330 BWI76_RS21335: BWI76_RS21335 - elongation factor 4, at 4,465,994 to 4,467,793 _RS21335 BWI76_RS21340: BWI76_RS21340 - SoxR reducing system protein RseC, at 4,467,978 to 4,468,457 _RS21340 BWI76_RS21345: BWI76_RS21345 - sigma-E factor regulatory protein RseB, at 4,468,454 to 4,469,410 _RS21345 Position (kb) 4465 4466 4467 4468Strain fitness (log2 ratio) -1 0 1at 4466.054 kb on - strandat 4467.843 kb on - strandat 4467.997 kb on - strandat 4468.218 kb on - strand, within BWI76_RS21340at 4468.223 kb on - strand, within BWI76_RS21340at 4468.265 kb on + strand, within BWI76_RS21340at 4468.534 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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4,466,054 - -1.0
4,467,843 - -0.8
4,467,997 - -1.7
4,468,218 - BWI76_RS21340 0.50 -0.6
4,468,223 - BWI76_RS21340 0.51 +0.3
4,468,265 + BWI76_RS21340 0.60 -0.7
4,468,534 - +0.3

Or see this region's nucleotide sequence