Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS07345

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS07340 and BWI76_RS07345 are separated by 19 nucleotidesBWI76_RS07345 and BWI76_RS07350 are separated by 131 nucleotides BWI76_RS07340: BWI76_RS07340 - amidohydrolase, at 1,546,555 to 1,547,733 _RS07340 BWI76_RS07345: BWI76_RS07345 - family 3 extracellular solute-binding protein, at 1,547,753 to 1,548,529 _RS07345 BWI76_RS07350: BWI76_RS07350 - alcohol dehydrogenase, at 1,548,661 to 1,549,614 _RS07350 Position (kb) 1547 1548 1549Strain fitness (log2 ratio) -1 0 1 2at 1546.777 kb on - strand, within BWI76_RS07340at 1546.813 kb on + strand, within BWI76_RS07340at 1546.824 kb on + strand, within BWI76_RS07340at 1546.881 kb on - strand, within BWI76_RS07340at 1546.929 kb on + strand, within BWI76_RS07340at 1546.944 kb on + strand, within BWI76_RS07340at 1546.947 kb on + strand, within BWI76_RS07340at 1546.955 kb on - strand, within BWI76_RS07340at 1546.972 kb on + strand, within BWI76_RS07340at 1547.036 kb on + strand, within BWI76_RS07340at 1547.228 kb on + strand, within BWI76_RS07340at 1547.324 kb on + strand, within BWI76_RS07340at 1547.644 kb on + strandat 1547.732 kb on - strandat 1547.734 kb on + strandat 1547.778 kb on - strandat 1547.778 kb on - strandat 1547.788 kb on - strandat 1547.855 kb on - strand, within BWI76_RS07345at 1547.884 kb on + strand, within BWI76_RS07345at 1547.929 kb on + strand, within BWI76_RS07345at 1547.937 kb on - strand, within BWI76_RS07345at 1547.943 kb on - strand, within BWI76_RS07345at 1547.970 kb on + strand, within BWI76_RS07345at 1548.030 kb on - strand, within BWI76_RS07345at 1548.030 kb on - strand, within BWI76_RS07345at 1548.067 kb on + strand, within BWI76_RS07345at 1548.075 kb on - strand, within BWI76_RS07345at 1548.075 kb on - strand, within BWI76_RS07345at 1548.188 kb on + strand, within BWI76_RS07345at 1548.201 kb on - strand, within BWI76_RS07345at 1548.539 kb on + strandat 1548.553 kb on + strandat 1548.553 kb on + strandat 1548.561 kb on - strandat 1548.883 kb on - strand, within BWI76_RS07350at 1548.883 kb on - strand, within BWI76_RS07350at 1548.914 kb on - strand, within BWI76_RS07350at 1549.476 kb on - strand, within BWI76_RS07350

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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1,546,777 - BWI76_RS07340 0.19 -0.7
1,546,813 + BWI76_RS07340 0.22 -0.5
1,546,824 + BWI76_RS07340 0.23 -0.1
1,546,881 - BWI76_RS07340 0.28 +0.3
1,546,929 + BWI76_RS07340 0.32 -0.1
1,546,944 + BWI76_RS07340 0.33 -0.3
1,546,947 + BWI76_RS07340 0.33 -1.6
1,546,955 - BWI76_RS07340 0.34 +0.9
1,546,972 + BWI76_RS07340 0.35 +0.0
1,547,036 + BWI76_RS07340 0.41 +0.3
1,547,228 + BWI76_RS07340 0.57 -0.2
1,547,324 + BWI76_RS07340 0.65 +0.3
1,547,644 + +0.5
1,547,732 - -1.3
1,547,734 + +0.8
1,547,778 - +0.1
1,547,778 - +0.5
1,547,788 - +0.7
1,547,855 - BWI76_RS07345 0.13 +1.6
1,547,884 + BWI76_RS07345 0.17 +1.0
1,547,929 + BWI76_RS07345 0.23 +2.4
1,547,937 - BWI76_RS07345 0.24 +0.1
1,547,943 - BWI76_RS07345 0.24 +0.3
1,547,970 + BWI76_RS07345 0.28 -0.8
1,548,030 - BWI76_RS07345 0.36 +0.3
1,548,030 - BWI76_RS07345 0.36 +0.5
1,548,067 + BWI76_RS07345 0.40 +0.3
1,548,075 - BWI76_RS07345 0.41 +0.7
1,548,075 - BWI76_RS07345 0.41 -0.6
1,548,188 + BWI76_RS07345 0.56 +1.2
1,548,201 - BWI76_RS07345 0.58 +0.7
1,548,539 + -1.3
1,548,553 + +0.1
1,548,553 + +0.3
1,548,561 - +2.7
1,548,883 - BWI76_RS07350 0.23 +0.5
1,548,883 - BWI76_RS07350 0.23 -0.1
1,548,914 - BWI76_RS07350 0.27 +2.0
1,549,476 - BWI76_RS07350 0.85 -0.4

Or see this region's nucleotide sequence