Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2539

Experiment: copper (II) chloride 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	copper (II) chloride 1 mM
3,171,217	-				+0.5
3,171,225	+				-1.1
3,171,244	+				-0.6
3,171,244	+				-0.9
3,171,244	+				-2.2
3,171,245	-				-2.0
3,171,245	-				-1.2
3,171,273	-				+2.1
3,171,361	+				+0.5
3,171,369	+				+1.7
3,171,369	+				-0.8
3,171,370	-				-0.5
3,171,375	+				-2.1
3,171,375	+				-0.1
3,171,380	+				-1.1
3,171,508	+				+0.7
3,171,512	+				-0.2
3,171,513	-				-1.1
3,171,587	+				-0.5
3,171,588	-				+0.0
3,171,591	+				-0.7
3,171,646	+		BT2538	0.14	-0.3
3,171,669	-		BT2538	0.19	-1.2
3,171,770	+		BT2538	0.40	+0.9
3,171,771	-		BT2538	0.40	-0.5
3,171,771	-		BT2538	0.40	-1.0
3,171,913	-		BT2538	0.69	-2.3
3,171,995	+		BT2538	0.86	-1.2
3,171,996	-		BT2538	0.86	-1.3
3,171,996	-		BT2538	0.86	-2.8
3,172,057	+				-2.1
3,172,137	+				+0.9
3,172,175	+				+0.0
3,172,292	+		BT2539	0.77	-1.9
3,172,292	+		BT2539	0.77	-1.8
3,172,293	-		BT2539	0.78	-3.4
3,172,360	-				-1.4
3,172,363	-				-1.3
3,172,433	+				-0.2
3,172,434	-				-1.1
3,172,468	+				-1.9
3,172,635	+				+0.5
3,172,638	-				-0.8
3,172,638	-				+1.5
3,172,638	-				-0.5
3,172,643	-				+2.5
3,172,648	+				-1.1
3,172,649	-				-2.9
3,172,649	-				-0.8
3,172,649	-				-0.1
3,172,660	+				-2.1
3,172,680	+		BT2540	0.11	+0.7
3,172,684	-		BT2540	0.11	-1.0
3,172,736	-		BT2540	0.16	-1.3
3,172,736	-		BT2540	0.16	-1.2
3,172,778	+		BT2540	0.19	-2.5
3,172,808	-		BT2540	0.22	-0.4
3,172,881	-		BT2540	0.28	-0.1
3,172,915	+		BT2540	0.31	+0.2
3,172,919	-		BT2540	0.31	+0.5
3,172,929	+		BT2540	0.32	-0.8
3,172,955	+		BT2540	0.34	-1.0
3,172,955	+		BT2540	0.34	-2.1
3,172,955	+		BT2540	0.34	+0.1
3,172,956	-		BT2540	0.34	-1.1
3,172,977	-		BT2540	0.36	-0.5
3,173,070	-		BT2540	0.44	-0.2
3,173,222	+		BT2540	0.57	-1.1
3,173,259	+		BT2540	0.60	-1.2
3,173,261	+				+0.5
3,173,262	-		BT2540	0.60	-1.0
3,173,262	-		BT2540	0.60	-0.1
3,173,274	-		BT2540	0.61	+1.5
3,173,285	-		BT2540	0.62	+0.0
3,173,285	-		BT2540	0.62	-1.1