Experiment: D-Cellobiose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS08235 and BWI76_RS08240 are separated by 46 nucleotides BWI76_RS08240 and BWI76_RS08245 are separated by 52 nucleotides BWI76_RS08245 and BWI76_RS08250 are separated by 52 nucleotides
BWI76_RS08235: BWI76_RS08235 - chitoporin, at 1,743,269 to 1,744,672
_RS08235
BWI76_RS08240: BWI76_RS08240 - hypothetical protein, at 1,744,719 to 1,745,051
_RS08240
BWI76_RS08245: BWI76_RS08245 - MFS transporter, at 1,745,104 to 1,746,399
_RS08245
BWI76_RS08250: BWI76_RS08250 - tricarballylate utilization protein B, at 1,746,452 to 1,747,591
_RS08250
Position (kb)
1745
1746
1747 Strain fitness (log2 ratio)
-1
0
1 at 1745.045 kb on + strand at 1745.390 kb on - strand, within BWI76_RS08245 at 1745.401 kb on - strand, within BWI76_RS08245 at 1745.440 kb on + strand, within BWI76_RS08245 at 1745.456 kb on + strand, within BWI76_RS08245 at 1745.570 kb on + strand, within BWI76_RS08245 at 1745.754 kb on + strand at 1746.007 kb on + strand at 1746.365 kb on - strand at 1746.439 kb on + strand at 1746.452 kb on - strand at 1746.739 kb on + strand, within BWI76_RS08250 at 1746.936 kb on - strand, within BWI76_RS08250 at 1746.936 kb on - strand, within BWI76_RS08250 at 1747.282 kb on - strand, within BWI76_RS08250
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cellobiose (C) remove 1,745,045 + -0.6 1,745,390 - BWI76_RS08245 0.22 +0.8 1,745,401 - BWI76_RS08245 0.23 +0.0 1,745,440 + BWI76_RS08245 0.26 +1.7 1,745,456 + BWI76_RS08245 0.27 +0.6 1,745,570 + BWI76_RS08245 0.36 +0.1 1,745,754 + +0.1 1,746,007 + +1.5 1,746,365 - +1.2 1,746,439 + -0.6 1,746,452 - +0.6 1,746,739 + BWI76_RS08250 0.25 -0.8 1,746,936 - BWI76_RS08250 0.42 +0.6 1,746,936 - BWI76_RS08250 0.42 -1.0 1,747,282 - BWI76_RS08250 0.73 +0.2
Or see this region's nucleotide sequence