Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS00595

Experiment: D-Cellobiose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS00585 and BWI76_RS00590 are separated by 15 nucleotidesBWI76_RS00590 and BWI76_RS00595 overlap by 4 nucleotidesBWI76_RS00595 and BWI76_RS00600 are separated by 106 nucleotides BWI76_RS00585: BWI76_RS00585 - dihydrodipicolinate synthase family protein, at 116,917 to 117,840 _RS00585 BWI76_RS00590: BWI76_RS00590 - hypothetical protein, at 117,856 to 118,347 _RS00590 BWI76_RS00595: BWI76_RS00595 - MFS transporter, at 118,344 to 119,621 _RS00595 BWI76_RS00600: BWI76_RS00600 - LacI family transcriptional regulator, at 119,728 to 120,723 _RS00600 Position (kb) 118 119 120Strain fitness (log2 ratio) -1 0 1 2 3at 117.431 kb on + strand, within BWI76_RS00585at 117.444 kb on - strand, within BWI76_RS00585at 117.451 kb on - strand, within BWI76_RS00585at 117.488 kb on - strand, within BWI76_RS00585at 117.542 kb on + strand, within BWI76_RS00585at 117.564 kb on + strand, within BWI76_RS00585at 117.577 kb on + strand, within BWI76_RS00585at 117.795 kb on + strandat 117.801 kb on + strandat 117.829 kb on + strandat 117.859 kb on + strandat 117.891 kb on + strandat 117.899 kb on - strandat 118.113 kb on - strand, within BWI76_RS00590at 118.290 kb on - strand, within BWI76_RS00590at 118.448 kb on - strandat 118.450 kb on + strandat 118.458 kb on - strandat 118.524 kb on + strand, within BWI76_RS00595at 118.623 kb on + strand, within BWI76_RS00595at 118.631 kb on + strand, within BWI76_RS00595at 118.644 kb on - strand, within BWI76_RS00595at 118.757 kb on - strand, within BWI76_RS00595at 118.914 kb on + strand, within BWI76_RS00595at 118.951 kb on + strand, within BWI76_RS00595at 118.970 kb on - strand, within BWI76_RS00595at 118.999 kb on - strand, within BWI76_RS00595at 119.012 kb on + strand, within BWI76_RS00595at 119.120 kb on + strand, within BWI76_RS00595at 119.151 kb on - strand, within BWI76_RS00595at 119.242 kb on - strand, within BWI76_RS00595at 119.259 kb on - strand, within BWI76_RS00595at 119.274 kb on + strand, within BWI76_RS00595at 119.435 kb on + strand, within BWI76_RS00595at 119.482 kb on - strand, within BWI76_RS00595at 119.850 kb on - strand, within BWI76_RS00600at 119.890 kb on - strand, within BWI76_RS00600at 120.058 kb on - strand, within BWI76_RS00600at 120.072 kb on - strand, within BWI76_RS00600at 120.072 kb on - strand, within BWI76_RS00600at 120.118 kb on - strand, within BWI76_RS00600at 120.418 kb on - strand, within BWI76_RS00600at 120.613 kb on + strand, within BWI76_RS00600

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cellobiose (C)
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117,431 + BWI76_RS00585 0.56 +0.5
117,444 - BWI76_RS00585 0.57 +0.3
117,451 - BWI76_RS00585 0.58 -1.2
117,488 - BWI76_RS00585 0.62 +0.2
117,542 + BWI76_RS00585 0.68 -0.7
117,564 + BWI76_RS00585 0.70 -0.6
117,577 + BWI76_RS00585 0.71 +0.6
117,795 + -0.7
117,801 + +0.2
117,829 + -0.3
117,859 + +0.4
117,891 + -0.5
117,899 - +0.6
118,113 - BWI76_RS00590 0.52 -0.3
118,290 - BWI76_RS00590 0.88 -0.1
118,448 - +0.2
118,450 + -0.2
118,458 - -0.6
118,524 + BWI76_RS00595 0.14 +0.3
118,623 + BWI76_RS00595 0.22 +0.1
118,631 + BWI76_RS00595 0.22 +2.8
118,644 - BWI76_RS00595 0.23 -1.2
118,757 - BWI76_RS00595 0.32 -1.5
118,914 + BWI76_RS00595 0.45 +0.3
118,951 + BWI76_RS00595 0.47 +0.2
118,970 - BWI76_RS00595 0.49 +0.4
118,999 - BWI76_RS00595 0.51 +0.9
119,012 + BWI76_RS00595 0.52 -0.4
119,120 + BWI76_RS00595 0.61 +0.2
119,151 - BWI76_RS00595 0.63 +2.0
119,242 - BWI76_RS00595 0.70 +1.3
119,259 - BWI76_RS00595 0.72 +1.4
119,274 + BWI76_RS00595 0.73 +1.2
119,435 + BWI76_RS00595 0.85 +0.3
119,482 - BWI76_RS00595 0.89 +1.5
119,850 - BWI76_RS00600 0.12 +2.8
119,890 - BWI76_RS00600 0.16 -0.4
120,058 - BWI76_RS00600 0.33 +0.2
120,072 - BWI76_RS00600 0.35 +1.8
120,072 - BWI76_RS00600 0.35 -1.4
120,118 - BWI76_RS00600 0.39 +0.3
120,418 - BWI76_RS00600 0.69 -0.7
120,613 + BWI76_RS00600 0.89 -0.0

Or see this region's nucleotide sequence