Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_25920

Experiment: outer cut, LB soft agar motility assay

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	outer cut, LB soft agar motility assay
5,716,396	+		AO353_25915	0.56	-0.8
5,716,397	-		AO353_25915	0.56	-0.1
5,716,397	-		AO353_25915	0.56	+0.8
5,716,397	-		AO353_25915	0.56	-0.8
5,716,397	-		AO353_25915	0.56	+0.1
5,716,397	-		AO353_25915	0.56	+0.0
5,716,495	+		AO353_25915	0.64	+2.6
5,716,532	-		AO353_25915	0.67	-1.1
5,716,532	-		AO353_25915	0.67	-0.3
5,716,532	-		AO353_25915	0.67	-1.3
5,716,704	+		AO353_25915	0.80	+0.6
5,716,793	+		AO353_25915	0.87	-2.2
5,716,793	+		AO353_25915	0.87	-2.2
5,716,793	+		AO353_25915	0.87	-1.8
5,716,794	-		AO353_25915	0.87	+0.3
5,716,794	-		AO353_25915	0.87	+1.6
5,716,822	+		AO353_25915	0.89	+0.1
5,716,822	+		AO353_25915	0.89	+1.7
5,716,823	-		AO353_25915	0.89	-0.2
5,717,018	+				+2.4
5,717,019	-				-1.7
5,717,019	-				-0.5
5,717,019	-				+4.1
5,717,019	-				-1.9
5,717,019	-				-0.5
5,717,019	-				+2.5
5,717,019	-				+1.2
5,717,106	-				+1.4
5,717,106	-				+2.2
5,717,117	+				+0.8
5,717,117	+				-0.6
5,717,139	+				-2.2
5,717,140	-				-0.9
5,717,170	+				-0.6
5,717,181	+				-1.4
5,717,181	+				-0.3
5,717,181	+				-0.6
5,717,181	+				+0.9
5,717,181	+				+1.8
5,717,181	+				-0.1
5,717,182	-				-1.6
5,717,182	-				+0.4
5,717,182	-				+1.6
5,717,182	-				+2.8
5,717,182	-				-0.8
5,717,182	-				-1.1
5,717,182	-				-0.1
5,717,182	-				-0.8
5,717,182	-				-1.8
5,717,182	-				-2.6
5,717,182	-				+0.1
5,717,182	-				-1.9
5,717,182	-				+0.5
5,717,182	-				+1.7
5,717,213	+				-1.5
5,717,226	-				-0.6
5,717,226	-				-1.6
5,717,250	+				+0.6
5,717,250	+				-1.5
5,717,251	-				+2.2
5,717,251	-				+0.2
5,717,254	+				-1.5
5,717,254	+				+0.3
5,717,254	+				+1.4
5,717,255	-				-1.6
5,717,255	-				+5.6
5,717,255	-				+3.1
5,717,255	-				+1.3
5,717,255	-				+0.4
5,717,255	-				+0.3
5,717,255	-				-0.7
5,717,270	+				-1.7
5,717,270	+				-0.6
5,717,278	+				+0.5
5,717,279	-				+1.8
5,717,279	-				+0.4
5,717,279	-				-2.5
5,717,430	+		AO353_25920	0.16	-2.8
5,717,430	+		AO353_25920	0.16	-0.9
5,717,430	+		AO353_25920	0.16	-2.1
5,717,431	-		AO353_25920	0.16	-1.0
5,717,431	-		AO353_25920	0.16	-1.8
5,717,508	+		AO353_25920	0.27	+2.6
5,717,508	+		AO353_25920	0.27	-1.7
5,717,509	-		AO353_25920	0.28	-1.6
5,717,509	-		AO353_25920	0.28	-2.5
5,717,592	+		AO353_25920	0.40	+0.7
5,717,592	+		AO353_25920	0.40	+0.2
5,717,593	-		AO353_25920	0.40	+0.6
5,717,608	+		AO353_25920	0.42	-0.2
5,717,609	-		AO353_25920	0.42	-1.6
5,717,609	-		AO353_25920	0.42	+1.5
5,717,618	-		AO353_25920	0.44	+0.2
5,717,618	-		AO353_25920	0.44	-0.1
5,717,618	-		AO353_25920	0.44	+2.8
5,717,627	+		AO353_25920	0.45	-1.0
5,717,686	+		AO353_25920	0.54	-2.2
5,717,686	+		AO353_25920	0.54	+1.4
5,717,687	-		AO353_25920	0.54	-2.6
5,717,687	-		AO353_25920	0.54	+0.9
5,717,687	-		AO353_25920	0.54	+1.9
5,717,772	-		AO353_25920	0.66	-2.0
5,717,791	+		AO353_25920	0.69	+0.7
5,717,792	-		AO353_25920	0.69	-0.1
5,717,795	+		AO353_25920	0.70	+0.9
5,717,795	+		AO353_25920	0.70	+0.2
5,717,795	+		AO353_25920	0.70	+3.9
5,717,795	+		AO353_25920	0.70	+0.4
5,717,795	+		AO353_25920	0.70	-1.7
5,717,795	+		AO353_25920	0.70	+1.1
5,717,795	+		AO353_25920	0.70	+1.3
5,717,796	-		AO353_25920	0.70	-0.1
5,717,796	-		AO353_25920	0.70	+0.4
5,717,796	-		AO353_25920	0.70	+3.1
5,717,796	-		AO353_25920	0.70	+0.8
5,717,844	+		AO353_25920	0.77	-1.1
5,717,844	+		AO353_25920	0.77	+1.5
5,717,845	-		AO353_25920	0.77	+0.5
5,717,845	-				+0.2
5,717,868	+		AO353_25920	0.81	+0.7
5,717,869	-		AO353_25920	0.81	+0.4
5,717,886	+		AO353_25920	0.83	-1.5
5,717,886	+		AO353_25920	0.83	+3.0
5,717,886	+		AO353_25920	0.83	-0.5
5,717,886	+		AO353_25920	0.83	-1.1
5,717,904	-		AO353_25920	0.86	-2.3
5,717,904	-		AO353_25920	0.86	+1.1
5,717,929	-		AO353_25920	0.90	+0.7
5,717,929	-		AO353_25920	0.90	-1.1
5,718,062	+				-1.2
5,718,065	+				+0.2
5,718,065	+				-1.1
5,718,065	+				+1.4
5,718,099	+				+0.5
5,718,099	+				+1.9
5,718,099	+				+2.2
5,718,101	+				-2.8
5,718,101	+				-0.0
5,718,101	+				+1.5
5,718,101	+				+0.3
5,718,102	-				-0.8
5,718,102	-				-0.9
5,718,102	-				+0.4
5,718,102	-				-1.8
5,718,102	-				+0.8
5,718,133	-				-0.1
5,718,447	+		AO353_25925	0.69	+1.7
5,718,448	-		AO353_25925	0.69	-1.1
5,718,448	-		AO353_25925	0.69	+0.7
5,718,570	-				+1.0
5,718,594	-				-1.6
5,718,601	+				-2.2
5,718,601	+				+1.5
5,718,601	+				-1.8
5,718,602	-				+0.8
5,718,673	+				+0.7
5,718,676	+				-2.6
5,718,676	+				+0.9
5,718,677	-				+1.3
5,718,677	-				-0.8
5,718,712	+				+1.7
5,718,757	-				-1.2
5,718,766	-				-1.0
5,718,766	-				-0.6
5,718,766	-				+0.7
5,718,770	-				+0.2
5,718,793	-		AO353_25930	0.13	-1.5
5,718,795	+		AO353_25930	0.13	-1.3
5,718,795	+				-0.3
5,718,795	+		AO353_25930	0.13	-0.4
5,718,796	-		AO353_25930	0.13	+0.8
5,718,847	-		AO353_25930	0.22	-1.1
5,718,847	-		AO353_25930	0.22	+1.8
5,718,872	+		AO353_25930	0.27	+1.6
5,718,872	+		AO353_25930	0.27	-1.1
5,718,872	+		AO353_25930	0.27	+1.2
5,718,873	-		AO353_25930	0.27	-0.1
5,718,873	-		AO353_25930	0.27	-1.4
5,718,873	-		AO353_25930	0.27	-0.8
5,718,873	-		AO353_25930	0.27	-0.8
5,718,878	+		AO353_25930	0.28	-1.9
5,718,878	+		AO353_25930	0.28	+1.5
5,718,879	-		AO353_25930	0.28	+0.8
5,718,879	-		AO353_25930	0.28	-1.3
5,718,879	-		AO353_25930	0.28	+1.1
5,718,910	+		AO353_25930	0.34	+2.2
5,718,911	-		AO353_25930	0.34	-1.1
5,718,940	+		AO353_25930	0.39	-1.4
5,718,941	-		AO353_25930	0.39	+0.4
5,718,941	-		AO353_25930	0.39	+2.5
5,718,980	-		AO353_25930	0.46	+0.3
5,718,980	-		AO353_25930	0.46	-1.3
5,718,981	+		AO353_25930	0.46	-1.3
5,718,981	+		AO353_25930	0.46	-0.1
5,718,982	-		AO353_25930	0.47	-1.1
5,718,982	-		AO353_25930	0.47	-0.1
5,718,982	-		AO353_25930	0.47	-0.6
5,718,988	-		AO353_25930	0.48	-1.1