Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_21020

Experiment: outer cut, LB soft agar motility assay

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_21015 and AO353_21020 overlap by 4 nucleotidesAO353_21020 and AO353_21025 overlap by 4 nucleotidesAO353_21025 and AO353_21030 overlap by 4 nucleotides AO353_21015: AO353_21015 - multidrug DMT transporter permease, at 4,593,099 to 4,594,430 _21015 AO353_21020: AO353_21020 - disulfide bond formation protein DsbA, at 4,594,427 to 4,595,092 _21020 AO353_21025: AO353_21025 - (2Fe-2S)-binding protein, at 4,595,089 to 4,595,415 _21025 AO353_21030: AO353_21030 - hypothetical protein, at 4,595,412 to 4,596,422 _21030 Position (kb) 4594 4595 4596Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 4593.449 kb on + strand, within AO353_21015at 4593.449 kb on + strand, within AO353_21015at 4593.450 kb on - strand, within AO353_21015at 4593.450 kb on - strand, within AO353_21015at 4593.450 kb on - strandat 4593.450 kb on - strand, within AO353_21015at 4593.450 kb on - strand, within AO353_21015at 4593.450 kb on - strand, within AO353_21015at 4593.450 kb on - strand, within AO353_21015at 4593.450 kb on - strand, within AO353_21015at 4593.450 kb on - strand, within AO353_21015at 4593.450 kb on - strand, within AO353_21015at 4593.450 kb on - strand, within AO353_21015at 4593.450 kb on - strand, within AO353_21015at 4593.450 kb on - strand, within AO353_21015at 4593.451 kb on + strand, within AO353_21015at 4593.451 kb on + strand, within AO353_21015at 4593.451 kb on + strand, within AO353_21015at 4593.452 kb on - strand, within AO353_21015at 4593.486 kb on + strand, within AO353_21015at 4593.486 kb on + strand, within AO353_21015at 4593.610 kb on + strand, within AO353_21015at 4593.611 kb on - strand, within AO353_21015at 4593.611 kb on - strand, within AO353_21015at 4593.777 kb on - strand, within AO353_21015at 4593.777 kb on - strand, within AO353_21015at 4593.777 kb on - strand, within AO353_21015at 4593.810 kb on + strand, within AO353_21015at 4593.810 kb on + strand, within AO353_21015at 4593.810 kb on + strand, within AO353_21015at 4593.811 kb on - strand, within AO353_21015at 4593.811 kb on - strand, within AO353_21015at 4593.811 kb on - strand, within AO353_21015at 4593.811 kb on - strand, within AO353_21015at 4593.811 kb on - strand, within AO353_21015at 4593.811 kb on - strand, within AO353_21015at 4593.870 kb on + strand, within AO353_21015at 4593.870 kb on + strand, within AO353_21015at 4593.870 kb on + strand, within AO353_21015at 4593.871 kb on - strand, within AO353_21015at 4593.871 kb on - strand, within AO353_21015at 4593.871 kb on - strand, within AO353_21015at 4593.871 kb on - strand, within AO353_21015at 4593.871 kb on - strand, within AO353_21015at 4593.871 kb on - strand, within AO353_21015at 4593.882 kb on + strand, within AO353_21015at 4593.882 kb on + strand, within AO353_21015at 4593.883 kb on - strand, within AO353_21015at 4593.883 kb on - strand, within AO353_21015at 4593.883 kb on - strand, within AO353_21015at 4593.883 kb on - strand, within AO353_21015at 4593.883 kb on - strand, within AO353_21015at 4593.885 kb on + strand, within AO353_21015at 4593.885 kb on + strand, within AO353_21015at 4593.885 kb on + strand, within AO353_21015at 4593.885 kb on + strand, within AO353_21015at 4594.037 kb on + strand, within AO353_21015at 4594.038 kb on - strand, within AO353_21015at 4594.217 kb on + strand, within AO353_21015at 4594.217 kb on + strand, within AO353_21015at 4594.217 kb on + strand, within AO353_21015at 4594.217 kb on + strand, within AO353_21015at 4594.218 kb on - strand, within AO353_21015at 4594.218 kb on - strand, within AO353_21015at 4594.218 kb on - strand, within AO353_21015at 4594.218 kb on - strand, within AO353_21015at 4594.218 kb on - strand, within AO353_21015at 4594.218 kb on - strand, within AO353_21015at 4594.218 kb on - strand, within AO353_21015at 4594.336 kb on - strandat 4594.465 kb on + strandat 4594.466 kb on - strandat 4594.594 kb on - strand, within AO353_21020at 4594.594 kb on - strand, within AO353_21020at 4594.619 kb on + strand, within AO353_21020at 4594.620 kb on - strand, within AO353_21020at 4594.620 kb on - strand, within AO353_21020at 4594.620 kb on - strand, within AO353_21020at 4594.735 kb on + strand, within AO353_21020at 4594.735 kb on + strand, within AO353_21020at 4594.736 kb on - strand, within AO353_21020at 4594.826 kb on + strand, within AO353_21020at 4594.826 kb on + strand, within AO353_21020at 4594.827 kb on - strand, within AO353_21020at 4594.827 kb on - strand, within AO353_21020at 4594.827 kb on - strand, within AO353_21020at 4594.835 kb on + strand, within AO353_21020at 4594.940 kb on + strand, within AO353_21020at 4594.940 kb on + strand, within AO353_21020at 4594.940 kb on + strand, within AO353_21020at 4594.940 kb on + strand, within AO353_21020at 4594.941 kb on - strand, within AO353_21020at 4594.941 kb on - strand, within AO353_21020at 4595.031 kb on + strandat 4595.031 kb on + strandat 4595.031 kb on + strandat 4595.031 kb on + strandat 4595.032 kb on - strandat 4595.032 kb on - strandat 4595.032 kb on - strandat 4595.032 kb on - strandat 4595.032 kb on - strandat 4595.032 kb on - strandat 4595.032 kb on - strandat 4595.032 kb on - strandat 4595.108 kb on + strandat 4595.109 kb on - strandat 4595.435 kb on + strandat 4595.435 kb on + strandat 4595.435 kb on + strandat 4595.435 kb on + strandat 4595.435 kb on + strandat 4595.436 kb on - strandat 4595.436 kb on - strandat 4595.441 kb on + strandat 4595.442 kb on - strandat 4595.520 kb on + strand, within AO353_21030at 4595.521 kb on - strand, within AO353_21030at 4595.651 kb on - strand, within AO353_21030at 4595.897 kb on - strand, within AO353_21030at 4595.919 kb on - strand, within AO353_21030at 4596.019 kb on + strand, within AO353_21030at 4596.019 kb on + strand, within AO353_21030at 4596.019 kb on + strand, within AO353_21030at 4596.061 kb on + strand, within AO353_21030at 4596.062 kb on - strand, within AO353_21030at 4596.062 kb on - strand, within AO353_21030at 4596.062 kb on - strand, within AO353_21030at 4596.062 kb on - strand, within AO353_21030at 4596.062 kb on - strand, within AO353_21030at 4596.062 kb on - strand, within AO353_21030

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay
remove
4,593,449 + AO353_21015 0.26 -1.5
4,593,449 + AO353_21015 0.26 -1.5
4,593,450 - AO353_21015 0.26 -0.2
4,593,450 - AO353_21015 0.26 -1.6
4,593,450 - -0.0
4,593,450 - AO353_21015 0.26 -0.0
4,593,450 - AO353_21015 0.26 +1.5
4,593,450 - AO353_21015 0.26 +0.1
4,593,450 - AO353_21015 0.26 -2.0
4,593,450 - AO353_21015 0.26 +1.6
4,593,450 - AO353_21015 0.26 +1.8
4,593,450 - AO353_21015 0.26 +0.3
4,593,450 - AO353_21015 0.26 +0.8
4,593,450 - AO353_21015 0.26 +0.3
4,593,450 - AO353_21015 0.26 -0.7
4,593,451 + AO353_21015 0.26 -0.3
4,593,451 + AO353_21015 0.26 -1.0
4,593,451 + AO353_21015 0.26 -1.7
4,593,452 - AO353_21015 0.27 -2.2
4,593,486 + AO353_21015 0.29 -1.4
4,593,486 + AO353_21015 0.29 -1.8
4,593,610 + AO353_21015 0.38 -1.9
4,593,611 - AO353_21015 0.38 -1.7
4,593,611 - AO353_21015 0.38 +0.8
4,593,777 - AO353_21015 0.51 +0.7
4,593,777 - AO353_21015 0.51 -1.8
4,593,777 - AO353_21015 0.51 +1.7
4,593,810 + AO353_21015 0.53 -2.4
4,593,810 + AO353_21015 0.53 -0.4
4,593,810 + AO353_21015 0.53 -1.0
4,593,811 - AO353_21015 0.53 -0.9
4,593,811 - AO353_21015 0.53 +0.4
4,593,811 - AO353_21015 0.53 +2.1
4,593,811 - AO353_21015 0.53 -0.7
4,593,811 - AO353_21015 0.53 +1.5
4,593,811 - AO353_21015 0.53 +1.0
4,593,870 + AO353_21015 0.58 -0.4
4,593,870 + AO353_21015 0.58 -0.4
4,593,870 + AO353_21015 0.58 -2.4
4,593,871 - AO353_21015 0.58 +1.8
4,593,871 - AO353_21015 0.58 -2.5
4,593,871 - AO353_21015 0.58 +1.1
4,593,871 - AO353_21015 0.58 -1.1
4,593,871 - AO353_21015 0.58 -0.6
4,593,871 - AO353_21015 0.58 -1.0
4,593,882 + AO353_21015 0.59 -1.0
4,593,882 + AO353_21015 0.59 -1.4
4,593,883 - AO353_21015 0.59 +1.7
4,593,883 - AO353_21015 0.59 -0.3
4,593,883 - AO353_21015 0.59 +2.1
4,593,883 - AO353_21015 0.59 +1.9
4,593,883 - AO353_21015 0.59 -0.6
4,593,885 + AO353_21015 0.59 -1.7
4,593,885 + AO353_21015 0.59 -0.5
4,593,885 + AO353_21015 0.59 -1.8
4,593,885 + AO353_21015 0.59 +0.1
4,594,037 + AO353_21015 0.70 +0.1
4,594,038 - AO353_21015 0.70 -1.2
4,594,217 + AO353_21015 0.84 +1.3
4,594,217 + AO353_21015 0.84 -2.4
4,594,217 + AO353_21015 0.84 -0.9
4,594,217 + AO353_21015 0.84 -1.3
4,594,218 - AO353_21015 0.84 +0.3
4,594,218 - AO353_21015 0.84 -1.8
4,594,218 - AO353_21015 0.84 +1.4
4,594,218 - AO353_21015 0.84 +0.7
4,594,218 - AO353_21015 0.84 +1.4
4,594,218 - AO353_21015 0.84 -1.9
4,594,218 - AO353_21015 0.84 +0.1
4,594,336 - +0.9
4,594,465 + -2.0
4,594,466 - +1.8
4,594,594 - AO353_21020 0.25 -0.1
4,594,594 - AO353_21020 0.25 +0.4
4,594,619 + AO353_21020 0.29 +0.8
4,594,620 - AO353_21020 0.29 -1.0
4,594,620 - AO353_21020 0.29 -1.5
4,594,620 - AO353_21020 0.29 -1.2
4,594,735 + AO353_21020 0.46 -0.6
4,594,735 + AO353_21020 0.46 -1.3
4,594,736 - AO353_21020 0.46 -1.3
4,594,826 + AO353_21020 0.60 -1.9
4,594,826 + AO353_21020 0.60 -1.9
4,594,827 - AO353_21020 0.60 +1.5
4,594,827 - AO353_21020 0.60 -0.4
4,594,827 - AO353_21020 0.60 -2.7
4,594,835 + AO353_21020 0.61 +1.3
4,594,940 + AO353_21020 0.77 -2.5
4,594,940 + AO353_21020 0.77 -0.7
4,594,940 + AO353_21020 0.77 -0.9
4,594,940 + AO353_21020 0.77 -1.5
4,594,941 - AO353_21020 0.77 -0.0
4,594,941 - AO353_21020 0.77 -0.2
4,595,031 + -2.3
4,595,031 + +6.6
4,595,031 + -1.2
4,595,031 + -0.6
4,595,032 - -0.7
4,595,032 - +0.8
4,595,032 - +2.0
4,595,032 - -0.8
4,595,032 - -0.8
4,595,032 - -1.2
4,595,032 - -1.3
4,595,032 - -0.8
4,595,108 + +0.7
4,595,109 - -1.4
4,595,435 + +0.7
4,595,435 + -0.6
4,595,435 + -1.2
4,595,435 + +1.8
4,595,435 + +0.1
4,595,436 - -0.7
4,595,436 - +0.1
4,595,441 + +1.8
4,595,442 - -0.9
4,595,520 + AO353_21030 0.11 -0.2
4,595,521 - AO353_21030 0.11 -1.7
4,595,651 - AO353_21030 0.24 -1.0
4,595,897 - AO353_21030 0.48 +1.9
4,595,919 - AO353_21030 0.50 -0.3
4,596,019 + AO353_21030 0.60 +1.0
4,596,019 + AO353_21030 0.60 -0.2
4,596,019 + AO353_21030 0.60 +0.4
4,596,061 + AO353_21030 0.64 +1.1
4,596,062 - AO353_21030 0.64 +1.0
4,596,062 - AO353_21030 0.64 +1.6
4,596,062 - AO353_21030 0.64 +0.1
4,596,062 - AO353_21030 0.64 -0.7
4,596,062 - AO353_21030 0.64 -1.4
4,596,062 - AO353_21030 0.64 -1.4

Or see this region's nucleotide sequence