Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_20380

Experiment: outer cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_20375 and AO353_20380 are separated by 176 nucleotidesAO353_20380 and AO353_20385 are separated by 72 nucleotides AO353_20375: AO353_20375 - LysR family transcriptional regulator, at 4,479,685 to 4,480,614 _20375 AO353_20380: AO353_20380 - acyl-CoA dehydrogenase, at 4,480,791 to 4,482,020 _20380 AO353_20385: AO353_20385 - transcriptional regulator, at 4,482,093 to 4,483,070 _20385 Position (kb) 4480 4481 4482 4483Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 4479.794 kb on + strand, within AO353_20375at 4479.795 kb on - strand, within AO353_20375at 4479.795 kb on - strand, within AO353_20375at 4479.795 kb on - strand, within AO353_20375at 4479.836 kb on + strand, within AO353_20375at 4479.836 kb on + strand, within AO353_20375at 4479.837 kb on - strand, within AO353_20375at 4479.886 kb on + strand, within AO353_20375at 4479.886 kb on + strand, within AO353_20375at 4479.887 kb on - strand, within AO353_20375at 4479.926 kb on + strand, within AO353_20375at 4479.926 kb on + strand, within AO353_20375at 4479.926 kb on + strand, within AO353_20375at 4479.926 kb on + strand, within AO353_20375at 4479.927 kb on - strand, within AO353_20375at 4479.927 kb on - strand, within AO353_20375at 4479.927 kb on - strand, within AO353_20375at 4479.927 kb on - strand, within AO353_20375at 4479.927 kb on - strand, within AO353_20375at 4479.989 kb on + strand, within AO353_20375at 4479.989 kb on + strand, within AO353_20375at 4479.989 kb on + strand, within AO353_20375at 4479.989 kb on + strand, within AO353_20375at 4480.040 kb on + strand, within AO353_20375at 4480.041 kb on - strand, within AO353_20375at 4480.103 kb on + strand, within AO353_20375at 4480.103 kb on + strand, within AO353_20375at 4480.104 kb on - strand, within AO353_20375at 4480.319 kb on + strand, within AO353_20375at 4480.562 kb on + strandat 4480.563 kb on - strandat 4480.563 kb on - strandat 4480.606 kb on + strandat 4480.606 kb on + strandat 4480.606 kb on + strandat 4480.606 kb on + strandat 4480.606 kb on + strandat 4480.606 kb on + strandat 4480.606 kb on + strandat 4480.607 kb on - strandat 4480.607 kb on - strandat 4480.607 kb on - strandat 4480.607 kb on - strandat 4480.669 kb on + strandat 4480.670 kb on - strandat 4480.670 kb on - strandat 4480.670 kb on - strandat 4480.671 kb on + strandat 4480.671 kb on + strandat 4480.672 kb on - strandat 4480.672 kb on - strandat 4480.687 kb on + strandat 4480.691 kb on - strandat 4480.712 kb on + strandat 4480.717 kb on + strandat 4480.718 kb on - strandat 4480.731 kb on + strandat 4480.731 kb on + strandat 4480.732 kb on - strandat 4480.732 kb on - strandat 4480.732 kb on - strandat 4480.732 kb on - strandat 4480.732 kb on - strandat 4480.732 kb on - strandat 4480.782 kb on + strandat 4480.782 kb on + strandat 4480.783 kb on - strandat 4480.783 kb on - strandat 4480.804 kb on - strandat 4480.857 kb on + strandat 4480.857 kb on + strandat 4480.857 kb on + strandat 4480.857 kb on + strandat 4480.857 kb on + strandat 4480.857 kb on + strandat 4480.858 kb on - strandat 4480.858 kb on - strandat 4480.858 kb on - strandat 4480.858 kb on - strandat 4480.858 kb on - strandat 4480.858 kb on - strandat 4480.858 kb on - strandat 4480.858 kb on - strandat 4480.858 kb on - strandat 4481.022 kb on + strand, within AO353_20380at 4481.022 kb on + strand, within AO353_20380at 4481.023 kb on - strand, within AO353_20380at 4481.110 kb on + strand, within AO353_20380at 4481.110 kb on + strand, within AO353_20380at 4481.110 kb on + strand, within AO353_20380at 4481.110 kb on + strand, within AO353_20380at 4481.110 kb on + strand, within AO353_20380at 4481.110 kb on + strand, within AO353_20380at 4481.111 kb on - strand, within AO353_20380at 4481.111 kb on - strand, within AO353_20380at 4481.111 kb on - strand, within AO353_20380at 4481.111 kb on - strand, within AO353_20380at 4481.111 kb on - strand, within AO353_20380at 4481.121 kb on + strand, within AO353_20380at 4481.400 kb on - strand, within AO353_20380at 4481.494 kb on + strand, within AO353_20380at 4481.494 kb on + strand, within AO353_20380at 4481.495 kb on - strand, within AO353_20380at 4481.495 kb on - strand, within AO353_20380at 4481.499 kb on + strand, within AO353_20380at 4481.499 kb on + strand, within AO353_20380at 4481.499 kb on + strand, within AO353_20380at 4481.500 kb on - strand, within AO353_20380at 4481.500 kb on - strand, within AO353_20380at 4481.748 kb on + strand, within AO353_20380at 4481.748 kb on + strand, within AO353_20380at 4481.748 kb on + strand, within AO353_20380at 4481.748 kb on + strand, within AO353_20380at 4481.748 kb on + strand, within AO353_20380at 4481.748 kb on + strand, within AO353_20380at 4481.749 kb on - strand, within AO353_20380at 4481.749 kb on - strand, within AO353_20380at 4481.895 kb on + strand, within AO353_20380at 4481.895 kb on + strand, within AO353_20380at 4481.895 kb on + strand, within AO353_20380at 4481.895 kb on + strand, within AO353_20380at 4481.895 kb on + strand, within AO353_20380at 4481.895 kb on + strand, within AO353_20380at 4481.895 kb on + strand, within AO353_20380at 4481.895 kb on + strand, within AO353_20380at 4481.896 kb on - strand, within AO353_20380at 4481.896 kb on - strand, within AO353_20380at 4481.896 kb on - strand, within AO353_20380at 4481.896 kb on - strand, within AO353_20380at 4481.896 kb on - strand, within AO353_20380at 4481.896 kb on - strand, within AO353_20380at 4481.896 kb on - strand, within AO353_20380at 4481.896 kb on - strand, within AO353_20380at 4481.896 kb on - strand, within AO353_20380at 4481.896 kb on - strand, within AO353_20380at 4481.896 kb on - strand, within AO353_20380at 4481.901 kb on + strandat 4481.901 kb on + strandat 4481.901 kb on + strandat 4481.901 kb on + strandat 4481.901 kb on + strandat 4481.901 kb on + strandat 4481.901 kb on + strandat 4481.901 kb on + strandat 4481.901 kb on + strandat 4481.901 kb on + strandat 4481.901 kb on + strandat 4481.901 kb on + strandat 4481.901 kb on + strandat 4481.901 kb on + strandat 4481.901 kb on + strandat 4481.902 kb on - strandat 4481.902 kb on - strandat 4481.902 kb on - strandat 4481.902 kb on - strandat 4481.902 kb on - strandat 4481.902 kb on - strandat 4481.902 kb on - strandat 4481.902 kb on - strandat 4481.902 kb on - strandat 4481.902 kb on - strandat 4481.902 kb on - strandat 4481.902 kb on - strandat 4481.902 kb on - strandat 4481.915 kb on + strandat 4481.915 kb on + strandat 4481.915 kb on + strandat 4481.915 kb on + strandat 4481.915 kb on + strandat 4481.915 kb on + strandat 4481.915 kb on + strandat 4481.916 kb on - strandat 4481.916 kb on - strandat 4481.916 kb on - strandat 4481.916 kb on - strandat 4481.916 kb on - strandat 4481.916 kb on - strandat 4481.985 kb on + strandat 4481.985 kb on + strandat 4481.985 kb on + strandat 4481.985 kb on + strandat 4481.985 kb on + strandat 4481.985 kb on + strandat 4481.985 kb on + strandat 4481.985 kb on + strandat 4481.985 kb on + strandat 4481.986 kb on - strandat 4481.986 kb on - strandat 4481.986 kb on - strandat 4481.986 kb on - strandat 4481.986 kb on - strandat 4481.986 kb on - strandat 4481.986 kb on - strandat 4482.018 kb on + strandat 4482.033 kb on + strandat 4482.033 kb on + strandat 4482.033 kb on + strandat 4482.033 kb on + strandat 4482.033 kb on + strandat 4482.034 kb on - strandat 4482.034 kb on - strandat 4482.034 kb on - strandat 4482.053 kb on + strandat 4482.053 kb on + strandat 4482.053 kb on + strandat 4482.053 kb on + strandat 4482.053 kb on + strandat 4482.053 kb on + strandat 4482.200 kb on - strand, within AO353_20385at 4482.327 kb on + strand, within AO353_20385at 4482.482 kb on + strand, within AO353_20385at 4482.482 kb on + strand, within AO353_20385at 4482.619 kb on + strand, within AO353_20385at 4482.619 kb on + strand, within AO353_20385at 4482.619 kb on + strand, within AO353_20385at 4482.619 kb on + strand, within AO353_20385at 4482.619 kb on + strand, within AO353_20385at 4482.619 kb on + strand, within AO353_20385at 4482.619 kb on + strand, within AO353_20385at 4482.619 kb on + strand, within AO353_20385at 4482.619 kb on + strand, within AO353_20385at 4482.619 kb on + strand, within AO353_20385at 4482.619 kb on + strand, within AO353_20385at 4482.619 kb on + strand, within AO353_20385at 4482.619 kb on + strand, within AO353_20385at 4482.619 kb on + strand, within AO353_20385at 4482.619 kb on + strand, within AO353_20385at 4482.619 kb on + strand, within AO353_20385at 4482.619 kb on + strand, within AO353_20385at 4482.619 kb on + strand, within AO353_20385at 4482.620 kb on - strand, within AO353_20385at 4482.620 kb on - strand, within AO353_20385at 4482.620 kb on - strand, within AO353_20385at 4482.620 kb on - strand, within AO353_20385at 4482.620 kb on - strand, within AO353_20385at 4482.620 kb on - strand, within AO353_20385at 4482.620 kb on - strand, within AO353_20385at 4482.620 kb on - strand, within AO353_20385at 4482.620 kb on - strand, within AO353_20385at 4482.675 kb on - strand, within AO353_20385at 4482.729 kb on + strand, within AO353_20385at 4482.729 kb on + strand, within AO353_20385at 4482.729 kb on + strand, within AO353_20385at 4482.729 kb on + strand, within AO353_20385at 4482.730 kb on - strand, within AO353_20385at 4482.799 kb on - strand, within AO353_20385at 4482.799 kb on - strand, within AO353_20385

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Per-strain Table

Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay
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4,479,794 + AO353_20375 0.12 +0.9
4,479,795 - AO353_20375 0.12 +0.9
4,479,795 - AO353_20375 0.12 -2.0
4,479,795 - AO353_20375 0.12 -0.9
4,479,836 + AO353_20375 0.16 +0.2
4,479,836 + AO353_20375 0.16 +0.2
4,479,837 - AO353_20375 0.16 +2.1
4,479,886 + AO353_20375 0.22 -1.5
4,479,886 + AO353_20375 0.22 -0.0
4,479,887 - AO353_20375 0.22 +0.4
4,479,926 + AO353_20375 0.26 +1.7
4,479,926 + AO353_20375 0.26 +1.4
4,479,926 + AO353_20375 0.26 -0.8
4,479,926 + AO353_20375 0.26 +2.1
4,479,927 - AO353_20375 0.26 +0.2
4,479,927 - AO353_20375 0.26 -1.1
4,479,927 - AO353_20375 0.26 +1.1
4,479,927 - AO353_20375 0.26 -2.9
4,479,927 - AO353_20375 0.26 +0.2
4,479,989 + AO353_20375 0.33 -2.3
4,479,989 + AO353_20375 0.33 +0.6
4,479,989 + AO353_20375 0.33 +2.0
4,479,989 + AO353_20375 0.33 +2.2
4,480,040 + AO353_20375 0.38 -1.1
4,480,041 - AO353_20375 0.38 -2.2
4,480,103 + AO353_20375 0.45 +2.9
4,480,103 + AO353_20375 0.45 +1.9
4,480,104 - AO353_20375 0.45 -1.0
4,480,319 + AO353_20375 0.68 -0.2
4,480,562 + +0.9
4,480,563 - +1.6
4,480,563 - -0.9
4,480,606 + -2.0
4,480,606 + +2.5
4,480,606 + -0.1
4,480,606 + -0.8
4,480,606 + -2.5
4,480,606 + -2.1
4,480,606 + +1.9
4,480,607 - -1.6
4,480,607 - +1.4
4,480,607 - -1.0
4,480,607 - +0.8
4,480,669 + +0.4
4,480,670 - +0.1
4,480,670 - +0.4
4,480,670 - -1.8
4,480,671 + -1.2
4,480,671 + +3.7
4,480,672 - -1.3
4,480,672 - -2.4
4,480,687 + +0.5
4,480,691 - +0.4
4,480,712 + +0.4
4,480,717 + -2.4
4,480,718 - -1.5
4,480,731 + -1.0
4,480,731 + -0.2
4,480,732 - -1.5
4,480,732 - +2.8
4,480,732 - -0.3
4,480,732 - +1.6
4,480,732 - -2.9
4,480,732 - -0.3
4,480,782 + +0.2
4,480,782 + -0.1
4,480,783 - -0.0
4,480,783 - -0.4
4,480,804 - +1.2
4,480,857 + -0.4
4,480,857 + +1.7
4,480,857 + +1.8
4,480,857 + +2.3
4,480,857 + +2.0
4,480,857 + +2.0
4,480,858 - +3.7
4,480,858 - -2.5
4,480,858 - +0.1
4,480,858 - +2.1
4,480,858 - +2.2
4,480,858 - +3.0
4,480,858 - +0.5
4,480,858 - +0.8
4,480,858 - -0.4
4,481,022 + AO353_20380 0.19 +2.4
4,481,022 + AO353_20380 0.19 +2.7
4,481,023 - AO353_20380 0.19 +3.1
4,481,110 + AO353_20380 0.26 +0.9
4,481,110 + AO353_20380 0.26 +2.8
4,481,110 + AO353_20380 0.26 +3.5
4,481,110 + AO353_20380 0.26 -0.9
4,481,110 + AO353_20380 0.26 -2.5
4,481,110 + AO353_20380 0.26 -1.7
4,481,111 - AO353_20380 0.26 +0.6
4,481,111 - AO353_20380 0.26 -1.3
4,481,111 - AO353_20380 0.26 +1.1
4,481,111 - AO353_20380 0.26 +1.4
4,481,111 - AO353_20380 0.26 +4.0
4,481,121 + AO353_20380 0.27 -2.4
4,481,400 - AO353_20380 0.50 +1.4
4,481,494 + AO353_20380 0.57 +2.1
4,481,494 + AO353_20380 0.57 -0.4
4,481,495 - AO353_20380 0.57 +1.2
4,481,495 - AO353_20380 0.57 +3.1
4,481,499 + AO353_20380 0.58 +3.8
4,481,499 + AO353_20380 0.58 -1.2
4,481,499 + AO353_20380 0.58 -1.7
4,481,500 - AO353_20380 0.58 +4.1
4,481,500 - AO353_20380 0.58 -0.1
4,481,748 + AO353_20380 0.78 +1.0
4,481,748 + AO353_20380 0.78 +1.0
4,481,748 + AO353_20380 0.78 -0.2
4,481,748 + AO353_20380 0.78 +1.6
4,481,748 + AO353_20380 0.78 +2.9
4,481,748 + AO353_20380 0.78 +2.4
4,481,749 - AO353_20380 0.78 +0.9
4,481,749 - AO353_20380 0.78 +2.2
4,481,895 + AO353_20380 0.90 -0.2
4,481,895 + AO353_20380 0.90 +2.2
4,481,895 + AO353_20380 0.90 +0.4
4,481,895 + AO353_20380 0.90 -1.0
4,481,895 + AO353_20380 0.90 +3.9
4,481,895 + AO353_20380 0.90 +2.6
4,481,895 + AO353_20380 0.90 +1.1
4,481,895 + AO353_20380 0.90 +0.7
4,481,896 - AO353_20380 0.90 -1.3
4,481,896 - AO353_20380 0.90 -1.2
4,481,896 - AO353_20380 0.90 -0.0
4,481,896 - AO353_20380 0.90 +3.8
4,481,896 - AO353_20380 0.90 +3.6
4,481,896 - AO353_20380 0.90 +1.5
4,481,896 - AO353_20380 0.90 +0.8
4,481,896 - AO353_20380 0.90 +0.8
4,481,896 - AO353_20380 0.90 -0.5
4,481,896 - AO353_20380 0.90 +1.2
4,481,896 - AO353_20380 0.90 +4.1
4,481,901 + +1.3
4,481,901 + +0.5
4,481,901 + -0.0
4,481,901 + +1.0
4,481,901 + -1.0
4,481,901 + +1.5
4,481,901 + -1.7
4,481,901 + -0.6
4,481,901 + +2.3
4,481,901 + +3.6
4,481,901 + -0.0
4,481,901 + +1.9
4,481,901 + +1.3
4,481,901 + +0.1
4,481,901 + -0.7
4,481,902 - -0.6
4,481,902 - +2.4
4,481,902 - +3.7
4,481,902 - +0.1
4,481,902 - -0.4
4,481,902 - +0.9
4,481,902 - +2.4
4,481,902 - -0.6
4,481,902 - -0.4
4,481,902 - +2.1
4,481,902 - -0.4
4,481,902 - +3.2
4,481,902 - -1.2
4,481,915 + -1.9
4,481,915 + +3.0
4,481,915 + -0.2
4,481,915 + +1.6
4,481,915 + -0.1
4,481,915 + +0.6
4,481,915 + -0.3
4,481,916 - -1.3
4,481,916 - -0.4
4,481,916 - +0.4
4,481,916 - +1.3
4,481,916 - -0.0
4,481,916 - -0.2
4,481,985 + -1.4
4,481,985 + +2.4
4,481,985 + +0.7
4,481,985 + -2.8
4,481,985 + +1.7
4,481,985 + -1.1
4,481,985 + -0.9
4,481,985 + +1.5
4,481,985 + -0.7
4,481,986 - +1.2
4,481,986 - +3.8
4,481,986 - -0.9
4,481,986 - -0.6
4,481,986 - +1.1
4,481,986 - +5.6
4,481,986 - -0.8
4,482,018 + +1.0
4,482,033 + -1.3
4,482,033 + -2.6
4,482,033 + +0.2
4,482,033 + +1.6
4,482,033 + +0.1
4,482,034 - +0.9
4,482,034 - +2.0
4,482,034 - -0.1
4,482,053 + -1.3
4,482,053 + +0.0
4,482,053 + +0.6
4,482,053 + -1.6
4,482,053 + +1.4
4,482,053 + +0.8
4,482,200 - AO353_20385 0.11 +1.1
4,482,327 + AO353_20385 0.24 -0.9
4,482,482 + AO353_20385 0.40 -0.5
4,482,482 + AO353_20385 0.40 +0.6
4,482,619 + AO353_20385 0.54 -0.6
4,482,619 + AO353_20385 0.54 -0.3
4,482,619 + AO353_20385 0.54 +0.8
4,482,619 + AO353_20385 0.54 +0.5
4,482,619 + AO353_20385 0.54 +0.2
4,482,619 + AO353_20385 0.54 -0.2
4,482,619 + AO353_20385 0.54 +0.7
4,482,619 + AO353_20385 0.54 -1.3
4,482,619 + AO353_20385 0.54 +0.9
4,482,619 + AO353_20385 0.54 +1.2
4,482,619 + AO353_20385 0.54 -0.6
4,482,619 + AO353_20385 0.54 +0.9
4,482,619 + AO353_20385 0.54 -1.1
4,482,619 + AO353_20385 0.54 -2.8
4,482,619 + AO353_20385 0.54 +0.8
4,482,619 + AO353_20385 0.54 -0.8
4,482,619 + AO353_20385 0.54 -1.5
4,482,619 + AO353_20385 0.54 -2.4
4,482,620 - AO353_20385 0.54 -1.6
4,482,620 - AO353_20385 0.54 +0.4
4,482,620 - AO353_20385 0.54 -2.1
4,482,620 - AO353_20385 0.54 -0.4
4,482,620 - AO353_20385 0.54 -2.0
4,482,620 - AO353_20385 0.54 +2.6
4,482,620 - AO353_20385 0.54 -1.5
4,482,620 - AO353_20385 0.54 +1.8
4,482,620 - AO353_20385 0.54 -1.1
4,482,675 - AO353_20385 0.60 -2.8
4,482,729 + AO353_20385 0.65 +1.2
4,482,729 + AO353_20385 0.65 +0.2
4,482,729 + AO353_20385 0.65 -0.2
4,482,729 + AO353_20385 0.65 -0.5
4,482,730 - AO353_20385 0.65 -1.8
4,482,799 - AO353_20385 0.72 -1.7
4,482,799 - AO353_20385 0.72 -0.0

Or see this region's nucleotide sequence