Experiment: outer cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_20375 and AO353_20380 are separated by 176 nucleotides AO353_20380 and AO353_20385 are separated by 72 nucleotides
AO353_20375: AO353_20375 - LysR family transcriptional regulator, at 4,479,685 to 4,480,614
_20375
AO353_20380: AO353_20380 - acyl-CoA dehydrogenase, at 4,480,791 to 4,482,020
_20380
AO353_20385: AO353_20385 - transcriptional regulator, at 4,482,093 to 4,483,070
_20385
Position (kb)
4480
4481
4482
4483 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 4479.794 kb on + strand, within AO353_20375 at 4479.795 kb on - strand, within AO353_20375 at 4479.795 kb on - strand, within AO353_20375 at 4479.795 kb on - strand, within AO353_20375 at 4479.836 kb on + strand, within AO353_20375 at 4479.836 kb on + strand, within AO353_20375 at 4479.837 kb on - strand, within AO353_20375 at 4479.886 kb on + strand, within AO353_20375 at 4479.886 kb on + strand, within AO353_20375 at 4479.887 kb on - strand, within AO353_20375 at 4479.926 kb on + strand, within AO353_20375 at 4479.926 kb on + strand, within AO353_20375 at 4479.926 kb on + strand, within AO353_20375 at 4479.926 kb on + strand, within AO353_20375 at 4479.927 kb on - strand, within AO353_20375 at 4479.927 kb on - strand, within AO353_20375 at 4479.927 kb on - strand, within AO353_20375 at 4479.927 kb on - strand, within AO353_20375 at 4479.927 kb on - strand, within AO353_20375 at 4479.989 kb on + strand, within AO353_20375 at 4479.989 kb on + strand, within AO353_20375 at 4479.989 kb on + strand, within AO353_20375 at 4479.989 kb on + strand, within AO353_20375 at 4480.040 kb on + strand, within AO353_20375 at 4480.041 kb on - strand, within AO353_20375 at 4480.103 kb on + strand, within AO353_20375 at 4480.103 kb on + strand, within AO353_20375 at 4480.104 kb on - strand, within AO353_20375 at 4480.319 kb on + strand, within AO353_20375 at 4480.562 kb on + strand at 4480.563 kb on - strand at 4480.563 kb on - strand at 4480.606 kb on + strand at 4480.606 kb on + strand at 4480.606 kb on + strand at 4480.606 kb on + strand at 4480.606 kb on + strand at 4480.606 kb on + strand at 4480.606 kb on + strand at 4480.607 kb on - strand at 4480.607 kb on - strand at 4480.607 kb on - strand at 4480.607 kb on - strand at 4480.669 kb on + strand at 4480.670 kb on - strand at 4480.670 kb on - strand at 4480.670 kb on - strand at 4480.671 kb on + strand at 4480.671 kb on + strand at 4480.672 kb on - strand at 4480.672 kb on - strand at 4480.687 kb on + strand at 4480.691 kb on - strand at 4480.712 kb on + strand at 4480.717 kb on + strand at 4480.718 kb on - strand at 4480.731 kb on + strand at 4480.731 kb on + strand at 4480.732 kb on - strand at 4480.732 kb on - strand at 4480.732 kb on - strand at 4480.732 kb on - strand at 4480.732 kb on - strand at 4480.732 kb on - strand at 4480.782 kb on + strand at 4480.782 kb on + strand at 4480.783 kb on - strand at 4480.783 kb on - strand at 4480.804 kb on - strand at 4480.857 kb on + strand at 4480.857 kb on + strand at 4480.857 kb on + strand at 4480.857 kb on + strand at 4480.857 kb on + strand at 4480.857 kb on + strand at 4480.858 kb on - strand at 4480.858 kb on - strand at 4480.858 kb on - strand at 4480.858 kb on - strand at 4480.858 kb on - strand at 4480.858 kb on - strand at 4480.858 kb on - strand at 4480.858 kb on - strand at 4480.858 kb on - strand at 4481.022 kb on + strand, within AO353_20380 at 4481.022 kb on + strand, within AO353_20380 at 4481.023 kb on - strand, within AO353_20380 at 4481.110 kb on + strand, within AO353_20380 at 4481.110 kb on + strand, within AO353_20380 at 4481.110 kb on + strand, within AO353_20380 at 4481.110 kb on + strand, within AO353_20380 at 4481.110 kb on + strand, within AO353_20380 at 4481.110 kb on + strand, within AO353_20380 at 4481.111 kb on - strand, within AO353_20380 at 4481.111 kb on - strand, within AO353_20380 at 4481.111 kb on - strand, within AO353_20380 at 4481.111 kb on - strand, within AO353_20380 at 4481.111 kb on - strand, within AO353_20380 at 4481.121 kb on + strand, within AO353_20380 at 4481.400 kb on - strand, within AO353_20380 at 4481.494 kb on + strand, within AO353_20380 at 4481.494 kb on + strand, within AO353_20380 at 4481.495 kb on - strand, within AO353_20380 at 4481.495 kb on - strand, within AO353_20380 at 4481.499 kb on + strand, within AO353_20380 at 4481.499 kb on + strand, within AO353_20380 at 4481.499 kb on + strand, within AO353_20380 at 4481.500 kb on - strand, within AO353_20380 at 4481.500 kb on - strand, within AO353_20380 at 4481.748 kb on + strand, within AO353_20380 at 4481.748 kb on + strand, within AO353_20380 at 4481.748 kb on + strand, within AO353_20380 at 4481.748 kb on + strand, within AO353_20380 at 4481.748 kb on + strand, within AO353_20380 at 4481.748 kb on + strand, within AO353_20380 at 4481.749 kb on - strand, within AO353_20380 at 4481.749 kb on - strand, within AO353_20380 at 4481.895 kb on + strand, within AO353_20380 at 4481.895 kb on + strand, within AO353_20380 at 4481.895 kb on + strand, within AO353_20380 at 4481.895 kb on + strand, within AO353_20380 at 4481.895 kb on + strand, within AO353_20380 at 4481.895 kb on + strand, within AO353_20380 at 4481.895 kb on + strand, within AO353_20380 at 4481.895 kb on + strand, within AO353_20380 at 4481.896 kb on - strand, within AO353_20380 at 4481.896 kb on - strand, within AO353_20380 at 4481.896 kb on - strand, within AO353_20380 at 4481.896 kb on - strand, within AO353_20380 at 4481.896 kb on - strand, within AO353_20380 at 4481.896 kb on - strand, within AO353_20380 at 4481.896 kb on - strand, within AO353_20380 at 4481.896 kb on - strand, within AO353_20380 at 4481.896 kb on - strand, within AO353_20380 at 4481.896 kb on - strand, within AO353_20380 at 4481.896 kb on - strand, within AO353_20380 at 4481.901 kb on + strand at 4481.901 kb on + strand at 4481.901 kb on + strand at 4481.901 kb on + strand at 4481.901 kb on + strand at 4481.901 kb on + strand at 4481.901 kb on + strand at 4481.901 kb on + strand at 4481.901 kb on + strand at 4481.901 kb on + strand at 4481.901 kb on + strand at 4481.901 kb on + strand at 4481.901 kb on + strand at 4481.901 kb on + strand at 4481.901 kb on + strand at 4481.902 kb on - strand at 4481.902 kb on - strand at 4481.902 kb on - strand at 4481.902 kb on - strand at 4481.902 kb on - strand at 4481.902 kb on - strand at 4481.902 kb on - strand at 4481.902 kb on - strand at 4481.902 kb on - strand at 4481.902 kb on - strand at 4481.902 kb on - strand at 4481.902 kb on - strand at 4481.902 kb on - strand at 4481.915 kb on + strand at 4481.915 kb on + strand at 4481.915 kb on + strand at 4481.915 kb on + strand at 4481.915 kb on + strand at 4481.915 kb on + strand at 4481.915 kb on + strand at 4481.916 kb on - strand at 4481.916 kb on - strand at 4481.916 kb on - strand at 4481.916 kb on - strand at 4481.916 kb on - strand at 4481.916 kb on - strand at 4481.985 kb on + strand at 4481.985 kb on + strand at 4481.985 kb on + strand at 4481.985 kb on + strand at 4481.985 kb on + strand at 4481.985 kb on + strand at 4481.985 kb on + strand at 4481.985 kb on + strand at 4481.985 kb on + strand at 4481.986 kb on - strand at 4481.986 kb on - strand at 4481.986 kb on - strand at 4481.986 kb on - strand at 4481.986 kb on - strand at 4481.986 kb on - strand at 4481.986 kb on - strand at 4482.018 kb on + strand at 4482.033 kb on + strand at 4482.033 kb on + strand at 4482.033 kb on + strand at 4482.033 kb on + strand at 4482.033 kb on + strand at 4482.034 kb on - strand at 4482.034 kb on - strand at 4482.034 kb on - strand at 4482.053 kb on + strand at 4482.053 kb on + strand at 4482.053 kb on + strand at 4482.053 kb on + strand at 4482.053 kb on + strand at 4482.053 kb on + strand at 4482.200 kb on - strand, within AO353_20385 at 4482.327 kb on + strand, within AO353_20385 at 4482.482 kb on + strand, within AO353_20385 at 4482.482 kb on + strand, within AO353_20385 at 4482.619 kb on + strand, within AO353_20385 at 4482.619 kb on + strand, within AO353_20385 at 4482.619 kb on + strand, within AO353_20385 at 4482.619 kb on + strand, within AO353_20385 at 4482.619 kb on + strand, within AO353_20385 at 4482.619 kb on + strand, within AO353_20385 at 4482.619 kb on + strand, within AO353_20385 at 4482.619 kb on + strand, within AO353_20385 at 4482.619 kb on + strand, within AO353_20385 at 4482.619 kb on + strand, within AO353_20385 at 4482.619 kb on + strand, within AO353_20385 at 4482.619 kb on + strand, within AO353_20385 at 4482.619 kb on + strand, within AO353_20385 at 4482.619 kb on + strand, within AO353_20385 at 4482.619 kb on + strand, within AO353_20385 at 4482.619 kb on + strand, within AO353_20385 at 4482.619 kb on + strand, within AO353_20385 at 4482.619 kb on + strand, within AO353_20385 at 4482.620 kb on - strand, within AO353_20385 at 4482.620 kb on - strand, within AO353_20385 at 4482.620 kb on - strand, within AO353_20385 at 4482.620 kb on - strand, within AO353_20385 at 4482.620 kb on - strand, within AO353_20385 at 4482.620 kb on - strand, within AO353_20385 at 4482.620 kb on - strand, within AO353_20385 at 4482.620 kb on - strand, within AO353_20385 at 4482.620 kb on - strand, within AO353_20385 at 4482.675 kb on - strand, within AO353_20385 at 4482.729 kb on + strand, within AO353_20385 at 4482.729 kb on + strand, within AO353_20385 at 4482.729 kb on + strand, within AO353_20385 at 4482.729 kb on + strand, within AO353_20385 at 4482.730 kb on - strand, within AO353_20385 at 4482.799 kb on - strand, within AO353_20385 at 4482.799 kb on - strand, within AO353_20385
Per-strain Table
Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay remove 4,479,794 + AO353_20375 0.12 +0.9 4,479,795 - AO353_20375 0.12 +0.9 4,479,795 - AO353_20375 0.12 -2.0 4,479,795 - AO353_20375 0.12 -0.9 4,479,836 + AO353_20375 0.16 +0.2 4,479,836 + AO353_20375 0.16 +0.2 4,479,837 - AO353_20375 0.16 +2.1 4,479,886 + AO353_20375 0.22 -1.5 4,479,886 + AO353_20375 0.22 -0.0 4,479,887 - AO353_20375 0.22 +0.4 4,479,926 + AO353_20375 0.26 +1.7 4,479,926 + AO353_20375 0.26 +1.4 4,479,926 + AO353_20375 0.26 -0.8 4,479,926 + AO353_20375 0.26 +2.1 4,479,927 - AO353_20375 0.26 +0.2 4,479,927 - AO353_20375 0.26 -1.1 4,479,927 - AO353_20375 0.26 +1.1 4,479,927 - AO353_20375 0.26 -2.9 4,479,927 - AO353_20375 0.26 +0.2 4,479,989 + AO353_20375 0.33 -2.3 4,479,989 + AO353_20375 0.33 +0.6 4,479,989 + AO353_20375 0.33 +2.0 4,479,989 + AO353_20375 0.33 +2.2 4,480,040 + AO353_20375 0.38 -1.1 4,480,041 - AO353_20375 0.38 -2.2 4,480,103 + AO353_20375 0.45 +2.9 4,480,103 + AO353_20375 0.45 +1.9 4,480,104 - AO353_20375 0.45 -1.0 4,480,319 + AO353_20375 0.68 -0.2 4,480,562 + +0.9 4,480,563 - +1.6 4,480,563 - -0.9 4,480,606 + -2.0 4,480,606 + +2.5 4,480,606 + -0.1 4,480,606 + -0.8 4,480,606 + -2.5 4,480,606 + -2.1 4,480,606 + +1.9 4,480,607 - -1.6 4,480,607 - +1.4 4,480,607 - -1.0 4,480,607 - +0.8 4,480,669 + +0.4 4,480,670 - +0.1 4,480,670 - +0.4 4,480,670 - -1.8 4,480,671 + -1.2 4,480,671 + +3.7 4,480,672 - -1.3 4,480,672 - -2.4 4,480,687 + +0.5 4,480,691 - +0.4 4,480,712 + +0.4 4,480,717 + -2.4 4,480,718 - -1.5 4,480,731 + -1.0 4,480,731 + -0.2 4,480,732 - -1.5 4,480,732 - +2.8 4,480,732 - -0.3 4,480,732 - +1.6 4,480,732 - -2.9 4,480,732 - -0.3 4,480,782 + +0.2 4,480,782 + -0.1 4,480,783 - -0.0 4,480,783 - -0.4 4,480,804 - +1.2 4,480,857 + -0.4 4,480,857 + +1.7 4,480,857 + +1.8 4,480,857 + +2.3 4,480,857 + +2.0 4,480,857 + +2.0 4,480,858 - +3.7 4,480,858 - -2.5 4,480,858 - +0.1 4,480,858 - +2.1 4,480,858 - +2.2 4,480,858 - +3.0 4,480,858 - +0.5 4,480,858 - +0.8 4,480,858 - -0.4 4,481,022 + AO353_20380 0.19 +2.4 4,481,022 + AO353_20380 0.19 +2.7 4,481,023 - AO353_20380 0.19 +3.1 4,481,110 + AO353_20380 0.26 +0.9 4,481,110 + AO353_20380 0.26 +2.8 4,481,110 + AO353_20380 0.26 +3.5 4,481,110 + AO353_20380 0.26 -0.9 4,481,110 + AO353_20380 0.26 -2.5 4,481,110 + AO353_20380 0.26 -1.7 4,481,111 - AO353_20380 0.26 +0.6 4,481,111 - AO353_20380 0.26 -1.3 4,481,111 - AO353_20380 0.26 +1.1 4,481,111 - AO353_20380 0.26 +1.4 4,481,111 - AO353_20380 0.26 +4.0 4,481,121 + AO353_20380 0.27 -2.4 4,481,400 - AO353_20380 0.50 +1.4 4,481,494 + AO353_20380 0.57 +2.1 4,481,494 + AO353_20380 0.57 -0.4 4,481,495 - AO353_20380 0.57 +1.2 4,481,495 - AO353_20380 0.57 +3.1 4,481,499 + AO353_20380 0.58 +3.8 4,481,499 + AO353_20380 0.58 -1.2 4,481,499 + AO353_20380 0.58 -1.7 4,481,500 - AO353_20380 0.58 +4.1 4,481,500 - AO353_20380 0.58 -0.1 4,481,748 + AO353_20380 0.78 +1.0 4,481,748 + AO353_20380 0.78 +1.0 4,481,748 + AO353_20380 0.78 -0.2 4,481,748 + AO353_20380 0.78 +1.6 4,481,748 + AO353_20380 0.78 +2.9 4,481,748 + AO353_20380 0.78 +2.4 4,481,749 - AO353_20380 0.78 +0.9 4,481,749 - AO353_20380 0.78 +2.2 4,481,895 + AO353_20380 0.90 -0.2 4,481,895 + AO353_20380 0.90 +2.2 4,481,895 + AO353_20380 0.90 +0.4 4,481,895 + AO353_20380 0.90 -1.0 4,481,895 + AO353_20380 0.90 +3.9 4,481,895 + AO353_20380 0.90 +2.6 4,481,895 + AO353_20380 0.90 +1.1 4,481,895 + AO353_20380 0.90 +0.7 4,481,896 - AO353_20380 0.90 -1.3 4,481,896 - AO353_20380 0.90 -1.2 4,481,896 - AO353_20380 0.90 -0.0 4,481,896 - AO353_20380 0.90 +3.8 4,481,896 - AO353_20380 0.90 +3.6 4,481,896 - AO353_20380 0.90 +1.5 4,481,896 - AO353_20380 0.90 +0.8 4,481,896 - AO353_20380 0.90 +0.8 4,481,896 - AO353_20380 0.90 -0.5 4,481,896 - AO353_20380 0.90 +1.2 4,481,896 - AO353_20380 0.90 +4.1 4,481,901 + +1.3 4,481,901 + +0.5 4,481,901 + -0.0 4,481,901 + +1.0 4,481,901 + -1.0 4,481,901 + +1.5 4,481,901 + -1.7 4,481,901 + -0.6 4,481,901 + +2.3 4,481,901 + +3.6 4,481,901 + -0.0 4,481,901 + +1.9 4,481,901 + +1.3 4,481,901 + +0.1 4,481,901 + -0.7 4,481,902 - -0.6 4,481,902 - +2.4 4,481,902 - +3.7 4,481,902 - +0.1 4,481,902 - -0.4 4,481,902 - +0.9 4,481,902 - +2.4 4,481,902 - -0.6 4,481,902 - -0.4 4,481,902 - +2.1 4,481,902 - -0.4 4,481,902 - +3.2 4,481,902 - -1.2 4,481,915 + -1.9 4,481,915 + +3.0 4,481,915 + -0.2 4,481,915 + +1.6 4,481,915 + -0.1 4,481,915 + +0.6 4,481,915 + -0.3 4,481,916 - -1.3 4,481,916 - -0.4 4,481,916 - +0.4 4,481,916 - +1.3 4,481,916 - -0.0 4,481,916 - -0.2 4,481,985 + -1.4 4,481,985 + +2.4 4,481,985 + +0.7 4,481,985 + -2.8 4,481,985 + +1.7 4,481,985 + -1.1 4,481,985 + -0.9 4,481,985 + +1.5 4,481,985 + -0.7 4,481,986 - +1.2 4,481,986 - +3.8 4,481,986 - -0.9 4,481,986 - -0.6 4,481,986 - +1.1 4,481,986 - +5.6 4,481,986 - -0.8 4,482,018 + +1.0 4,482,033 + -1.3 4,482,033 + -2.6 4,482,033 + +0.2 4,482,033 + +1.6 4,482,033 + +0.1 4,482,034 - +0.9 4,482,034 - +2.0 4,482,034 - -0.1 4,482,053 + -1.3 4,482,053 + +0.0 4,482,053 + +0.6 4,482,053 + -1.6 4,482,053 + +1.4 4,482,053 + +0.8 4,482,200 - AO353_20385 0.11 +1.1 4,482,327 + AO353_20385 0.24 -0.9 4,482,482 + AO353_20385 0.40 -0.5 4,482,482 + AO353_20385 0.40 +0.6 4,482,619 + AO353_20385 0.54 -0.6 4,482,619 + AO353_20385 0.54 -0.3 4,482,619 + AO353_20385 0.54 +0.8 4,482,619 + AO353_20385 0.54 +0.5 4,482,619 + AO353_20385 0.54 +0.2 4,482,619 + AO353_20385 0.54 -0.2 4,482,619 + AO353_20385 0.54 +0.7 4,482,619 + AO353_20385 0.54 -1.3 4,482,619 + AO353_20385 0.54 +0.9 4,482,619 + AO353_20385 0.54 +1.2 4,482,619 + AO353_20385 0.54 -0.6 4,482,619 + AO353_20385 0.54 +0.9 4,482,619 + AO353_20385 0.54 -1.1 4,482,619 + AO353_20385 0.54 -2.8 4,482,619 + AO353_20385 0.54 +0.8 4,482,619 + AO353_20385 0.54 -0.8 4,482,619 + AO353_20385 0.54 -1.5 4,482,619 + AO353_20385 0.54 -2.4 4,482,620 - AO353_20385 0.54 -1.6 4,482,620 - AO353_20385 0.54 +0.4 4,482,620 - AO353_20385 0.54 -2.1 4,482,620 - AO353_20385 0.54 -0.4 4,482,620 - AO353_20385 0.54 -2.0 4,482,620 - AO353_20385 0.54 +2.6 4,482,620 - AO353_20385 0.54 -1.5 4,482,620 - AO353_20385 0.54 +1.8 4,482,620 - AO353_20385 0.54 -1.1 4,482,675 - AO353_20385 0.60 -2.8 4,482,729 + AO353_20385 0.65 +1.2 4,482,729 + AO353_20385 0.65 +0.2 4,482,729 + AO353_20385 0.65 -0.2 4,482,729 + AO353_20385 0.65 -0.5 4,482,730 - AO353_20385 0.65 -1.8 4,482,799 - AO353_20385 0.72 -1.7 4,482,799 - AO353_20385 0.72 -0.0
Or see this region's nucleotide sequence