Experiment: outer cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_19355 and AO353_19360 overlap by 25 nucleotides AO353_19360 and AO353_19365 overlap by 1 nucleotides AO353_19365 and AO353_19370 are separated by 153 nucleotides AO353_19370 and AO353_19375 overlap by 1 nucleotides
AO353_19355: AO353_19355 - dihydroneopterin aldolase, at 4,241,923 to 4,242,690
_19355
AO353_19360: AO353_19360 - peroxiredoxin, at 4,242,666 to 4,243,532
_19360
AO353_19365: AO353_19365 - thiol:disulfide interchange protein, at 4,243,532 to 4,245,268
_19365
AO353_19370: AO353_19370 - transcriptional regulator, at 4,245,422 to 4,246,102
_19370
AO353_19375: AO353_19375 - histidine kinase, at 4,246,102 to 4,247,424
_19375
Position (kb) 4243
4244
4245
4246 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4242.817 kb on + strand, within AO353_19360 at 4242.827 kb on + strand, within AO353_19360 at 4243.334 kb on - strand, within AO353_19360 at 4243.345 kb on + strand, within AO353_19360 at 4243.346 kb on - strand, within AO353_19360 at 4243.346 kb on - strand, within AO353_19360 at 4243.748 kb on + strand, within AO353_19365 at 4243.749 kb on - strand, within AO353_19365 at 4243.810 kb on - strand, within AO353_19365 at 4243.810 kb on - strand, within AO353_19365 at 4243.810 kb on - strand, within AO353_19365 at 4243.810 kb on - strand, within AO353_19365 at 4243.810 kb on - strand, within AO353_19365 at 4243.810 kb on - strand, within AO353_19365 at 4243.813 kb on - strand, within AO353_19365 at 4243.813 kb on - strand, within AO353_19365 at 4243.813 kb on - strand, within AO353_19365 at 4243.813 kb on - strand, within AO353_19365 at 4243.813 kb on - strand, within AO353_19365 at 4243.813 kb on - strand, within AO353_19365 at 4243.813 kb on - strand, within AO353_19365 at 4243.813 kb on - strand, within AO353_19365 at 4243.945 kb on - strand, within AO353_19365 at 4243.945 kb on - strand, within AO353_19365 at 4243.945 kb on - strand, within AO353_19365 at 4244.089 kb on - strand, within AO353_19365 at 4244.118 kb on - strand, within AO353_19365 at 4244.118 kb on - strand, within AO353_19365 at 4244.341 kb on - strand, within AO353_19365 at 4244.607 kb on - strand, within AO353_19365 at 4244.607 kb on - strand, within AO353_19365 at 4244.607 kb on - strand, within AO353_19365 at 4244.607 kb on - strand, within AO353_19365 at 4244.622 kb on + strand, within AO353_19365 at 4244.623 kb on - strand, within AO353_19365 at 4244.623 kb on - strand, within AO353_19365 at 4244.647 kb on - strand, within AO353_19365 at 4244.647 kb on - strand, within AO353_19365 at 4244.647 kb on - strand, within AO353_19365 at 4244.647 kb on - strand, within AO353_19365 at 4244.647 kb on - strand, within AO353_19365 at 4244.647 kb on - strand, within AO353_19365 at 4244.647 kb on - strand, within AO353_19365 at 4244.986 kb on - strand, within AO353_19365 at 4245.088 kb on - strand, within AO353_19365 at 4245.093 kb on + strand, within AO353_19365 at 4245.094 kb on - strand, within AO353_19365 at 4245.094 kb on - strand, within AO353_19365 at 4245.094 kb on - strand, within AO353_19365 at 4245.094 kb on - strand, within AO353_19365 at 4245.094 kb on - strand, within AO353_19365 at 4245.094 kb on - strand, within AO353_19365 at 4245.094 kb on - strand, within AO353_19365 at 4245.094 kb on - strand, within AO353_19365 at 4245.094 kb on - strand, within AO353_19365 at 4245.094 kb on - strand, within AO353_19365 at 4245.252 kb on - strand at 4245.252 kb on - strand at 4245.293 kb on + strand at 4245.293 kb on + strand at 4245.293 kb on + strand at 4245.294 kb on - strand at 4245.294 kb on - strand at 4245.294 kb on - strand at 4245.294 kb on - strand at 4245.294 kb on - strand at 4245.367 kb on + strand at 4245.367 kb on + strand at 4245.368 kb on - strand at 4245.394 kb on + strand at 4245.394 kb on + strand at 4245.394 kb on + strand at 4245.395 kb on - strand at 4245.395 kb on - strand at 4245.395 kb on - strand at 4245.410 kb on - strand at 4245.410 kb on - strand at 4245.429 kb on + strand at 4245.429 kb on + strand at 4245.429 kb on + strand at 4245.429 kb on + strand at 4245.429 kb on + strand at 4245.429 kb on + strand at 4245.429 kb on + strand at 4245.429 kb on + strand at 4245.429 kb on + strand at 4245.429 kb on + strand at 4245.429 kb on + strand at 4245.429 kb on + strand at 4245.429 kb on + strand at 4245.429 kb on + strand at 4245.429 kb on + strand at 4245.429 kb on + strand at 4245.430 kb on - strand at 4245.430 kb on - strand at 4245.430 kb on - strand at 4245.430 kb on - strand at 4245.430 kb on - strand at 4245.430 kb on - strand at 4245.430 kb on - strand at 4245.430 kb on - strand at 4245.430 kb on - strand at 4245.430 kb on - strand at 4245.430 kb on - strand at 4245.430 kb on - strand at 4245.430 kb on - strand at 4245.430 kb on - strand at 4245.430 kb on - strand at 4245.430 kb on - strand at 4245.713 kb on + strand, within AO353_19370 at 4245.714 kb on - strand, within AO353_19370 at 4245.714 kb on - strand, within AO353_19370 at 4245.821 kb on + strand, within AO353_19370 at 4245.821 kb on + strand, within AO353_19370 at 4245.821 kb on + strand, within AO353_19370 at 4245.821 kb on + strand, within AO353_19370 at 4245.821 kb on + strand, within AO353_19370 at 4245.821 kb on + strand, within AO353_19370 at 4245.822 kb on - strand, within AO353_19370 at 4245.822 kb on - strand, within AO353_19370 at 4245.822 kb on - strand, within AO353_19370 at 4245.822 kb on - strand, within AO353_19370 at 4245.822 kb on - strand, within AO353_19370 at 4245.996 kb on + strand, within AO353_19370 at 4245.996 kb on + strand, within AO353_19370 at 4245.996 kb on + strand, within AO353_19370 at 4245.996 kb on + strand, within AO353_19370 at 4245.996 kb on + strand, within AO353_19370 at 4245.996 kb on + strand, within AO353_19370 at 4245.996 kb on + strand, within AO353_19370 at 4245.996 kb on + strand, within AO353_19370 at 4245.996 kb on + strand, within AO353_19370 at 4245.996 kb on + strand, within AO353_19370 at 4245.996 kb on + strand, within AO353_19370 at 4245.996 kb on + strand, within AO353_19370 at 4245.996 kb on + strand, within AO353_19370 at 4245.996 kb on + strand, within AO353_19370 at 4245.996 kb on + strand, within AO353_19370 at 4245.996 kb on + strand, within AO353_19370 at 4245.996 kb on + strand, within AO353_19370 at 4245.996 kb on + strand, within AO353_19370 at 4245.996 kb on + strand, within AO353_19370 at 4245.996 kb on + strand, within AO353_19370 at 4245.996 kb on + strand, within AO353_19370 at 4245.996 kb on + strand, within AO353_19370 at 4245.996 kb on + strand, within AO353_19370 at 4245.997 kb on - strand, within AO353_19370 at 4245.997 kb on - strand, within AO353_19370 at 4245.997 kb on - strand, within AO353_19370 at 4245.997 kb on - strand, within AO353_19370 at 4245.997 kb on - strand, within AO353_19370 at 4245.997 kb on - strand, within AO353_19370 at 4245.997 kb on - strand, within AO353_19370 at 4245.997 kb on - strand, within AO353_19370 at 4245.997 kb on - strand, within AO353_19370 at 4245.997 kb on - strand, within AO353_19370 at 4245.997 kb on - strand, within AO353_19370 at 4245.997 kb on - strand, within AO353_19370 at 4245.997 kb on - strand, within AO353_19370 at 4245.997 kb on - strand, within AO353_19370 at 4245.997 kb on - strand, within AO353_19370 at 4245.997 kb on - strand, within AO353_19370 at 4245.997 kb on - strand, within AO353_19370 at 4245.997 kb on - strand, within AO353_19370 at 4245.997 kb on - strand, within AO353_19370 at 4245.997 kb on - strand, within AO353_19370 at 4245.997 kb on - strand, within AO353_19370 at 4245.997 kb on - strand, within AO353_19370 at 4245.997 kb on - strand, within AO353_19370 at 4245.997 kb on - strand, within AO353_19370 at 4246.000 kb on + strand, within AO353_19370 at 4246.000 kb on + strand, within AO353_19370 at 4246.000 kb on + strand, within AO353_19370 at 4246.000 kb on + strand, within AO353_19370 at 4246.000 kb on + strand, within AO353_19370 at 4246.000 kb on + strand, within AO353_19370 at 4246.000 kb on + strand, within AO353_19370 at 4246.000 kb on + strand, within AO353_19370 at 4246.000 kb on + strand, within AO353_19370 at 4246.000 kb on + strand, within AO353_19370 at 4246.000 kb on + strand, within AO353_19370 at 4246.000 kb on + strand, within AO353_19370 at 4246.001 kb on - strand, within AO353_19370 at 4246.001 kb on - strand, within AO353_19370 at 4246.001 kb on - strand, within AO353_19370 at 4246.001 kb on - strand, within AO353_19370 at 4246.001 kb on - strand, within AO353_19370 at 4246.001 kb on - strand, within AO353_19370 at 4246.001 kb on - strand, within AO353_19370 at 4246.001 kb on - strand, within AO353_19370 at 4246.018 kb on + strand, within AO353_19370 at 4246.018 kb on + strand, within AO353_19370 at 4246.019 kb on - strand, within AO353_19370 at 4246.243 kb on - strand, within AO353_19375 at 4246.243 kb on - strand, within AO353_19375
Per-strain Table
Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay remove 4,242,817 + AO353_19360 0.17 -0.8 4,242,827 + AO353_19360 0.19 -0.9 4,243,334 - AO353_19360 0.77 -1.2 4,243,345 + AO353_19360 0.78 -0.0 4,243,346 - AO353_19360 0.78 -2.1 4,243,346 - AO353_19360 0.78 -1.6 4,243,748 + AO353_19365 0.12 -0.9 4,243,749 - AO353_19365 0.12 +2.6 4,243,810 - AO353_19365 0.16 +1.2 4,243,810 - AO353_19365 0.16 -1.2 4,243,810 - AO353_19365 0.16 +2.8 4,243,810 - AO353_19365 0.16 -1.0 4,243,810 - AO353_19365 0.16 -0.0 4,243,810 - AO353_19365 0.16 -0.9 4,243,813 - AO353_19365 0.16 +1.1 4,243,813 - AO353_19365 0.16 -1.0 4,243,813 - AO353_19365 0.16 -1.2 4,243,813 - AO353_19365 0.16 +1.7 4,243,813 - AO353_19365 0.16 +0.2 4,243,813 - AO353_19365 0.16 -2.1 4,243,813 - AO353_19365 0.16 +2.0 4,243,813 - AO353_19365 0.16 -0.2 4,243,945 - AO353_19365 0.24 -0.0 4,243,945 - AO353_19365 0.24 +1.0 4,243,945 - AO353_19365 0.24 -1.3 4,244,089 - AO353_19365 0.32 -1.5 4,244,118 - AO353_19365 0.34 -1.5 4,244,118 - AO353_19365 0.34 -1.7 4,244,341 - AO353_19365 0.47 -0.2 4,244,607 - AO353_19365 0.62 -1.8 4,244,607 - AO353_19365 0.62 +2.0 4,244,607 - AO353_19365 0.62 +2.6 4,244,607 - AO353_19365 0.62 -0.0 4,244,622 + AO353_19365 0.63 -1.0 4,244,623 - AO353_19365 0.63 -2.2 4,244,623 - AO353_19365 0.63 -0.7 4,244,647 - AO353_19365 0.64 +1.9 4,244,647 - AO353_19365 0.64 +0.4 4,244,647 - AO353_19365 0.64 -1.0 4,244,647 - AO353_19365 0.64 +0.5 4,244,647 - AO353_19365 0.64 +1.2 4,244,647 - AO353_19365 0.64 -0.4 4,244,647 - AO353_19365 0.64 -0.7 4,244,986 - AO353_19365 0.84 +1.0 4,245,088 - AO353_19365 0.90 +0.8 4,245,093 + AO353_19365 0.90 -1.0 4,245,094 - AO353_19365 0.90 -1.0 4,245,094 - AO353_19365 0.90 -2.1 4,245,094 - AO353_19365 0.90 +0.2 4,245,094 - AO353_19365 0.90 +1.1 4,245,094 - AO353_19365 0.90 -1.1 4,245,094 - AO353_19365 0.90 -2.6 4,245,094 - AO353_19365 0.90 -0.4 4,245,094 - AO353_19365 0.90 -3.2 4,245,094 - AO353_19365 0.90 -2.2 4,245,094 - AO353_19365 0.90 -1.1 4,245,252 - -1.8 4,245,252 - +2.1 4,245,293 + -0.6 4,245,293 + -0.0 4,245,293 + -0.4 4,245,294 - +1.0 4,245,294 - +0.3 4,245,294 - +2.6 4,245,294 - -0.7 4,245,294 - -2.1 4,245,367 + +0.2 4,245,367 + +3.6 4,245,368 - -0.5 4,245,394 + -1.6 4,245,394 + +0.4 4,245,394 + -2.1 4,245,395 - -0.7 4,245,395 - -1.7 4,245,395 - +0.4 4,245,410 - +0.3 4,245,410 - +1.2 4,245,429 + +1.7 4,245,429 + +0.3 4,245,429 + -1.3 4,245,429 + -0.4 4,245,429 + +3.2 4,245,429 + +0.2 4,245,429 + +2.4 4,245,429 + -1.5 4,245,429 + +0.3 4,245,429 + +0.5 4,245,429 + -0.2 4,245,429 + -0.5 4,245,429 + -1.0 4,245,429 + -1.0 4,245,429 + -2.2 4,245,429 + -0.1 4,245,430 - +2.8 4,245,430 - +3.5 4,245,430 - +1.5 4,245,430 - +0.7 4,245,430 - -1.1 4,245,430 - -0.8 4,245,430 - -1.2 4,245,430 - -0.2 4,245,430 - -0.9 4,245,430 - +1.2 4,245,430 - +1.4 4,245,430 - +0.1 4,245,430 - +1.5 4,245,430 - -2.5 4,245,430 - -0.2 4,245,430 - -1.8 4,245,713 + AO353_19370 0.43 -3.3 4,245,714 - AO353_19370 0.43 -0.3 4,245,714 - AO353_19370 0.43 -0.4 4,245,821 + AO353_19370 0.59 +0.4 4,245,821 + AO353_19370 0.59 -1.6 4,245,821 + AO353_19370 0.59 +1.0 4,245,821 + AO353_19370 0.59 +1.0 4,245,821 + AO353_19370 0.59 +0.8 4,245,821 + AO353_19370 0.59 +0.1 4,245,822 - AO353_19370 0.59 +0.3 4,245,822 - AO353_19370 0.59 +2.5 4,245,822 - AO353_19370 0.59 -2.1 4,245,822 - AO353_19370 0.59 +2.3 4,245,822 - AO353_19370 0.59 +0.6 4,245,996 + AO353_19370 0.84 -1.3 4,245,996 + AO353_19370 0.84 +0.8 4,245,996 + AO353_19370 0.84 +0.8 4,245,996 + AO353_19370 0.84 +0.5 4,245,996 + AO353_19370 0.84 +0.3 4,245,996 + AO353_19370 0.84 -2.8 4,245,996 + AO353_19370 0.84 +1.0 4,245,996 + AO353_19370 0.84 -1.6 4,245,996 + AO353_19370 0.84 -0.5 4,245,996 + AO353_19370 0.84 -1.0 4,245,996 + AO353_19370 0.84 -0.5 4,245,996 + AO353_19370 0.84 +0.9 4,245,996 + AO353_19370 0.84 -1.1 4,245,996 + AO353_19370 0.84 +0.6 4,245,996 + AO353_19370 0.84 -1.1 4,245,996 + AO353_19370 0.84 +0.2 4,245,996 + AO353_19370 0.84 -1.4 4,245,996 + AO353_19370 0.84 -1.4 4,245,996 + AO353_19370 0.84 -0.3 4,245,996 + AO353_19370 0.84 -0.1 4,245,996 + AO353_19370 0.84 -1.6 4,245,996 + AO353_19370 0.84 +0.9 4,245,996 + AO353_19370 0.84 +2.0 4,245,997 - AO353_19370 0.84 -1.2 4,245,997 - AO353_19370 0.84 +0.3 4,245,997 - AO353_19370 0.84 -0.4 4,245,997 - AO353_19370 0.84 -0.2 4,245,997 - AO353_19370 0.84 +0.4 4,245,997 - AO353_19370 0.84 +0.3 4,245,997 - AO353_19370 0.84 +1.5 4,245,997 - AO353_19370 0.84 -1.0 4,245,997 - AO353_19370 0.84 -1.6 4,245,997 - AO353_19370 0.84 -1.8 4,245,997 - AO353_19370 0.84 -0.6 4,245,997 - AO353_19370 0.84 -1.3 4,245,997 - AO353_19370 0.84 +1.8 4,245,997 - AO353_19370 0.84 +3.7 4,245,997 - AO353_19370 0.84 -0.0 4,245,997 - AO353_19370 0.84 -0.2 4,245,997 - AO353_19370 0.84 +1.6 4,245,997 - AO353_19370 0.84 -0.6 4,245,997 - AO353_19370 0.84 -0.6 4,245,997 - AO353_19370 0.84 -2.4 4,245,997 - AO353_19370 0.84 +1.1 4,245,997 - AO353_19370 0.84 -0.6 4,245,997 - AO353_19370 0.84 -1.8 4,245,997 - AO353_19370 0.84 +0.0 4,246,000 + AO353_19370 0.85 -1.5 4,246,000 + AO353_19370 0.85 +1.3 4,246,000 + AO353_19370 0.85 +1.0 4,246,000 + AO353_19370 0.85 -1.4 4,246,000 + AO353_19370 0.85 +1.4 4,246,000 + AO353_19370 0.85 -2.0 4,246,000 + AO353_19370 0.85 +0.1 4,246,000 + AO353_19370 0.85 -0.1 4,246,000 + AO353_19370 0.85 +3.4 4,246,000 + AO353_19370 0.85 +1.5 4,246,000 + AO353_19370 0.85 -2.8 4,246,000 + AO353_19370 0.85 +2.3 4,246,001 - AO353_19370 0.85 +1.5 4,246,001 - AO353_19370 0.85 -0.9 4,246,001 - AO353_19370 0.85 -1.9 4,246,001 - AO353_19370 0.85 +1.0 4,246,001 - AO353_19370 0.85 +2.3 4,246,001 - AO353_19370 0.85 -0.4 4,246,001 - AO353_19370 0.85 -0.4 4,246,001 - AO353_19370 0.85 -0.4 4,246,018 + AO353_19370 0.88 +0.8 4,246,018 + AO353_19370 0.88 +0.6 4,246,019 - AO353_19370 0.88 -1.3 4,246,243 - AO353_19375 0.11 -0.1 4,246,243 - AO353_19375 0.11 +1.6
Or see this region's nucleotide sequence