Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_18200

Experiment: outer cut, LB soft agar motility assay

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	outer cut, LB soft agar motility assay
4,007,577	+		AO353_18195	0.75	+0.9
4,007,577	+		AO353_18195	0.75	-0.8
4,007,577	+		AO353_18195	0.75	+1.2
4,007,577	+		AO353_18195	0.75	-0.5
4,007,577	+		AO353_18195	0.75	-2.1
4,007,578	-		AO353_18195	0.75	+1.5
4,007,578	-		AO353_18195	0.75	+0.3
4,007,578	-		AO353_18195	0.75	+0.8
4,007,703	+		AO353_18195	0.79	+1.1
4,007,703	+		AO353_18195	0.79	-0.9
4,007,703	+		AO353_18195	0.79	+0.4
4,007,703	+		AO353_18195	0.79	-0.1
4,007,704	-		AO353_18195	0.79	-0.6
4,007,704	-		AO353_18195	0.79	+0.4
4,007,704	-		AO353_18195	0.79	-0.6
4,007,704	-		AO353_18195	0.79	+0.9
4,007,704	-		AO353_18195	0.79	-0.6
4,007,704	-		AO353_18195	0.79	+4.5
4,007,819	+		AO353_18195	0.82	+1.1
4,007,819	+		AO353_18195	0.82	+0.3
4,007,819	+		AO353_18195	0.82	+0.5
4,007,820	-		AO353_18195	0.82	-0.4
4,007,822	+		AO353_18195	0.82	-0.6
4,007,822	+		AO353_18195	0.82	-2.1
4,007,823	-		AO353_18195	0.82	-0.1
4,007,823	-		AO353_18195	0.82	-2.0
4,007,823	-		AO353_18195	0.82	+0.4
4,007,823	-		AO353_18195	0.82	+0.1
4,007,823	-		AO353_18195	0.82	+1.6
4,007,823	-		AO353_18195	0.82	-1.7
4,007,915	+		AO353_18195	0.85	+2.1
4,007,915	+		AO353_18195	0.85	-0.1
4,007,915	+		AO353_18195	0.85	+1.7
4,007,916	-		AO353_18195	0.85	-1.3
4,007,916	-		AO353_18195	0.85	-1.1
4,007,921	+		AO353_18195	0.85	-1.1
4,007,921	+		AO353_18195	0.85	-0.8
4,007,921	+		AO353_18195	0.85	-1.0
4,007,921	+		AO353_18195	0.85	+0.7
4,007,921	+		AO353_18195	0.85	+1.2
4,007,921	+		AO353_18195	0.85	+1.9
4,007,921	+		AO353_18195	0.85	+2.3
4,007,922	-		AO353_18195	0.85	-1.7
4,007,922	-		AO353_18195	0.85	+1.9
4,007,938	-		AO353_18195	0.86	-1.3
4,007,938	-		AO353_18195	0.86	-0.6
4,007,964	+				+0.9
4,007,964	+		AO353_18195	0.87	-0.7
4,007,964	+		AO353_18195	0.87	+2.6
4,007,964	+		AO353_18195	0.87	-1.1
4,007,964	+		AO353_18195	0.87	-0.1
4,007,965	-		AO353_18195	0.87	+0.9
4,007,965	-		AO353_18195	0.87	-0.9
4,007,967	+		AO353_18195	0.87	-1.7
4,007,967	+		AO353_18195	0.87	-0.3
4,007,967	+		AO353_18195	0.87	+0.2
4,007,968	-		AO353_18195	0.87	+2.4
4,007,968	-		AO353_18195	0.87	-1.9
4,007,996	+		AO353_18195	0.88	-1.1
4,007,997	-		AO353_18195	0.88	+1.3
4,007,997	-		AO353_18195	0.88	+1.4
4,008,081	+				-1.6
4,008,082	-				+2.1
4,008,082	-				-1.4
4,008,332	-				-0.7
4,008,332	-				-2.0
4,008,349	+				+0.3
4,008,349	+				+1.4
4,008,349	+				-1.2
4,008,350	-				+1.0
4,008,350	-				+0.6
4,008,350	-				+0.0
4,008,350	-				-0.4
4,008,350	-				-0.6
4,008,433	+				+0.9
4,008,433	+				-0.3
4,008,572	+				+1.3
4,008,573	-				+1.3
4,008,573	-				-0.9
4,008,580	-				+0.9
4,008,580	-				-0.2
4,008,754	+		AO353_18200	0.24	-0.6
4,008,754	+		AO353_18200	0.24	-1.3
4,008,754	+		AO353_18200	0.24	+0.3
4,008,755	-		AO353_18200	0.24	+2.6
4,008,755	-		AO353_18200	0.24	-0.6
4,008,755	-		AO353_18200	0.24	-0.7
4,008,755	-		AO353_18200	0.24	-2.3
4,008,755	-		AO353_18200	0.24	-1.2
4,008,763	+		AO353_18200	0.25	+3.2
4,008,763	+		AO353_18200	0.25	-0.3
4,008,763	+		AO353_18200	0.25	-1.5
4,008,763	+		AO353_18200	0.25	-0.8
4,008,763	+		AO353_18200	0.25	+0.1
4,008,829	+		AO353_18200	0.30	+0.9
4,008,829	+		AO353_18200	0.30	-1.6
4,008,830	-		AO353_18200	0.30	-1.0
4,008,947	+		AO353_18200	0.40	+1.8
4,008,947	+		AO353_18200	0.40	+0.8
4,008,948	-		AO353_18200	0.40	+5.0
4,008,948	-		AO353_18200	0.40	+0.0
4,008,988	+		AO353_18200	0.44	+0.9
4,008,988	+		AO353_18200	0.44	+0.0
4,008,989	-		AO353_18200	0.44	+0.2
4,008,989	-		AO353_18200	0.44	-0.7
4,008,989	-		AO353_18200	0.44	-0.6
4,009,037	+		AO353_18200	0.48	+0.1
4,009,037	+		AO353_18200	0.48	+1.4
4,009,038	-		AO353_18200	0.48	+2.2
4,009,038	-		AO353_18200	0.48	-0.9
4,009,038	-		AO353_18200	0.48	+0.4
4,009,038	-		AO353_18200	0.48	+0.8
4,009,038	-		AO353_18200	0.48	+1.0
4,009,528	+		AO353_18200	0.89	-0.8
4,009,528	+		AO353_18200	0.89	-1.4
4,009,528	+		AO353_18200	0.89	+1.5
4,009,528	+		AO353_18200	0.89	-0.4
4,009,529	-		AO353_18200	0.89	-0.2
4,009,603	+				+1.5
4,009,603	+				+0.9
4,009,603	+				-1.0
4,009,603	+				+0.3
4,009,604	-				+1.1
4,009,604	-				+0.4
4,009,604	-				+2.1
4,009,604	-				-1.6
4,009,604	-				-1.1
4,009,604	-				+1.1
4,009,604	-				+2.4
4,009,604	-				-1.3
4,009,604	-				-2.1
4,009,604	-				-3.1
4,009,640	+				+1.8
4,009,640	+				-2.0
4,009,640	+				+0.6
4,009,640	+				+2.5
4,009,640	+				+1.4
4,009,641	-				-1.7
4,009,641	-				+0.4
4,009,643	+				-0.7
4,009,643	+				+1.6
4,009,643	+				+0.4
4,009,643	+				+0.1
4,009,643	+				-1.2
4,009,643	+				+0.4
4,009,643	+				-0.3
4,009,643	+				+2.5
4,009,643	+				-1.9
4,009,643	+				-0.7
4,009,643	+				-2.2
4,009,643	+				-0.8
4,009,643	+				+2.4
4,009,643	+				-0.3
4,009,644	-				-1.3
4,009,644	-				+1.3
4,009,644	-				-0.9
4,009,644	-				-0.4
4,009,644	-				+2.2
4,009,644	-				+0.3
4,009,644	-				+2.0
4,009,644	-				-1.3
4,009,644	-				-1.7
4,009,644	-				-0.8
4,009,644	-				+0.8
4,009,644	-				+4.4
4,009,644	-				+0.5
4,009,644	-				+1.0
4,009,939	-		AO353_18205	0.11	+4.8
4,009,939	-		AO353_18205	0.11	+10.0
4,010,111	+		AO353_18205	0.17	+1.5
4,010,111	+		AO353_18205	0.17	-0.8
4,010,111	+		AO353_18205	0.17	+1.8
4,010,112	-		AO353_18205	0.17	+6.6
4,010,112	-		AO353_18205	0.17	+7.0
4,010,112	-		AO353_18205	0.17	+8.7
4,010,112	-		AO353_18205	0.17	+3.4
4,010,112	-		AO353_18205	0.17	+2.4
4,010,112	-		AO353_18205	0.17	+6.7
4,010,160	-		AO353_18205	0.18	+3.8
4,010,160	-		AO353_18205	0.18	+6.3
4,010,478	+		AO353_18205	0.30	-1.2
4,010,479	-		AO353_18205	0.30	+3.3
4,010,547	+		AO353_18205	0.32	+1.6
4,010,547	+		AO353_18205	0.32	-1.3
4,010,548	-		AO353_18205	0.32	+5.2
4,010,548	-		AO353_18205	0.32	+2.7
4,010,548	-		AO353_18205	0.32	+3.3
4,010,548	-		AO353_18205	0.32	-0.0
4,010,548	-		AO353_18205	0.32	+1.5
4,010,567	+		AO353_18205	0.33	+2.2
4,010,568	-		AO353_18205	0.33	+1.6
4,010,568	-		AO353_18205	0.33	+3.2