Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_14445

Experiment: outer cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_14440 and AO353_14445 overlap by 4 nucleotidesAO353_14445 and AO353_14450 overlap by 1 nucleotidesAO353_14450 and AO353_14455 are separated by 9 nucleotides AO353_14440: AO353_14440 - ABC transporter substrate-binding protein, at 3,202,108 to 3,202,995 _14440 AO353_14445: AO353_14445 - ABC transporter permease, at 3,202,992 to 3,204,029 _14445 AO353_14450: AO353_14450 - hemin ABC transporter ATP-binding protein, at 3,204,029 to 3,204,796 _14450 AO353_14455: AO353_14455 - iron(III) ABC transporter, at 3,204,806 to 3,205,657 _14455 Position (kb) 3202 3203 3204 3205Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 3202.056 kb on + strandat 3202.107 kb on + strandat 3202.107 kb on + strandat 3202.119 kb on + strandat 3202.120 kb on - strandat 3202.128 kb on + strandat 3202.129 kb on - strandat 3202.129 kb on - strandat 3202.495 kb on - strand, within AO353_14440at 3202.495 kb on - strand, within AO353_14440at 3202.540 kb on + strand, within AO353_14440at 3202.540 kb on + strand, within AO353_14440at 3202.540 kb on + strand, within AO353_14440at 3202.540 kb on + strand, within AO353_14440at 3202.541 kb on - strand, within AO353_14440at 3202.541 kb on - strand, within AO353_14440at 3202.541 kb on - strand, within AO353_14440at 3202.701 kb on + strand, within AO353_14440at 3202.701 kb on + strand, within AO353_14440at 3202.701 kb on + strand, within AO353_14440at 3202.716 kb on + strand, within AO353_14440at 3202.890 kb on + strand, within AO353_14440at 3202.890 kb on + strand, within AO353_14440at 3202.891 kb on - strand, within AO353_14440at 3202.891 kb on - strand, within AO353_14440at 3202.937 kb on + strandat 3202.937 kb on + strandat 3202.938 kb on - strandat 3202.957 kb on + strandat 3202.957 kb on + strandat 3202.957 kb on + strandat 3202.958 kb on - strandat 3202.958 kb on - strandat 3202.997 kb on + strandat 3202.997 kb on + strandat 3202.997 kb on + strandat 3202.997 kb on + strandat 3202.998 kb on - strandat 3202.998 kb on - strandat 3202.998 kb on - strandat 3202.998 kb on - strandat 3203.102 kb on + strand, within AO353_14445at 3203.103 kb on - strand, within AO353_14445at 3203.198 kb on + strand, within AO353_14445at 3203.198 kb on + strand, within AO353_14445at 3203.199 kb on - strand, within AO353_14445at 3203.382 kb on + strand, within AO353_14445at 3203.382 kb on + strand, within AO353_14445at 3203.382 kb on + strand, within AO353_14445at 3203.382 kb on + strand, within AO353_14445at 3203.383 kb on - strand, within AO353_14445at 3203.383 kb on - strand, within AO353_14445at 3203.538 kb on + strand, within AO353_14445at 3203.538 kb on + strand, within AO353_14445at 3203.538 kb on + strand, within AO353_14445at 3203.538 kb on + strand, within AO353_14445at 3203.539 kb on - strand, within AO353_14445at 3203.539 kb on - strand, within AO353_14445at 3203.539 kb on - strand, within AO353_14445at 3203.539 kb on - strand, within AO353_14445at 3203.564 kb on + strand, within AO353_14445at 3203.564 kb on + strand, within AO353_14445at 3203.565 kb on - strand, within AO353_14445at 3203.607 kb on + strand, within AO353_14445at 3203.607 kb on + strand, within AO353_14445at 3203.607 kb on + strand, within AO353_14445at 3203.607 kb on + strand, within AO353_14445at 3203.607 kb on + strand, within AO353_14445at 3203.607 kb on + strand, within AO353_14445at 3203.607 kb on + strand, within AO353_14445at 3203.607 kb on + strand, within AO353_14445at 3203.607 kb on + strand, within AO353_14445at 3203.608 kb on - strand, within AO353_14445at 3203.608 kb on - strand, within AO353_14445at 3204.001 kb on + strandat 3204.001 kb on + strandat 3204.002 kb on - strandat 3204.002 kb on - strandat 3204.002 kb on - strandat 3204.002 kb on - strandat 3204.002 kb on - strandat 3204.002 kb on - strandat 3204.002 kb on - strandat 3204.002 kb on - strandat 3204.003 kb on + strandat 3204.003 kb on + strandat 3204.003 kb on + strandat 3204.003 kb on + strandat 3204.003 kb on + strandat 3204.003 kb on + strandat 3204.004 kb on - strandat 3204.004 kb on - strandat 3204.004 kb on - strandat 3204.013 kb on + strandat 3204.013 kb on + strandat 3204.014 kb on - strandat 3204.014 kb on - strandat 3204.152 kb on - strand, within AO353_14450at 3204.180 kb on + strand, within AO353_14450at 3204.180 kb on + strand, within AO353_14450at 3204.180 kb on + strand, within AO353_14450at 3204.180 kb on + strand, within AO353_14450at 3204.180 kb on + strand, within AO353_14450at 3204.180 kb on + strand, within AO353_14450at 3204.180 kb on + strand, within AO353_14450at 3204.181 kb on - strand, within AO353_14450at 3204.181 kb on - strand, within AO353_14450at 3204.181 kb on - strand, within AO353_14450at 3204.181 kb on - strand, within AO353_14450at 3204.222 kb on + strand, within AO353_14450at 3204.223 kb on - strand, within AO353_14450at 3204.223 kb on - strand, within AO353_14450at 3204.223 kb on - strand, within AO353_14450at 3204.420 kb on - strand, within AO353_14450at 3204.420 kb on - strand, within AO353_14450at 3204.420 kb on - strand, within AO353_14450at 3204.420 kb on - strand, within AO353_14450at 3204.837 kb on + strandat 3204.838 kb on - strandat 3204.908 kb on - strand, within AO353_14455at 3205.020 kb on + strand, within AO353_14455

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Per-strain Table

Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay
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3,202,056 + -0.3
3,202,107 + +2.0
3,202,107 + +0.6
3,202,119 + -0.6
3,202,120 - +1.9
3,202,128 + -0.3
3,202,129 - +0.4
3,202,129 - -1.9
3,202,495 - AO353_14440 0.44 +0.6
3,202,495 - AO353_14440 0.44 +0.9
3,202,540 + AO353_14440 0.49 -1.6
3,202,540 + AO353_14440 0.49 -0.9
3,202,540 + AO353_14440 0.49 +1.9
3,202,540 + AO353_14440 0.49 +0.3
3,202,541 - AO353_14440 0.49 +0.4
3,202,541 - AO353_14440 0.49 +1.2
3,202,541 - AO353_14440 0.49 +1.6
3,202,701 + AO353_14440 0.67 +1.8
3,202,701 + AO353_14440 0.67 +0.6
3,202,701 + AO353_14440 0.67 +0.6
3,202,716 + AO353_14440 0.68 +1.1
3,202,890 + AO353_14440 0.88 -1.1
3,202,890 + AO353_14440 0.88 -2.6
3,202,891 - AO353_14440 0.88 +0.5
3,202,891 - AO353_14440 0.88 -0.9
3,202,937 + -0.7
3,202,937 + -1.0
3,202,938 - -1.9
3,202,957 + +0.9
3,202,957 + +1.2
3,202,957 + -0.9
3,202,958 - +2.7
3,202,958 - -0.8
3,202,997 + +0.0
3,202,997 + -2.2
3,202,997 + +1.1
3,202,997 + -1.2
3,202,998 - -1.5
3,202,998 - -1.9
3,202,998 - +0.9
3,202,998 - +0.2
3,203,102 + AO353_14445 0.11 -0.2
3,203,103 - AO353_14445 0.11 -0.9
3,203,198 + AO353_14445 0.20 -0.2
3,203,198 + AO353_14445 0.20 +0.2
3,203,199 - AO353_14445 0.20 +4.8
3,203,382 + AO353_14445 0.38 +0.5
3,203,382 + AO353_14445 0.38 -1.1
3,203,382 + AO353_14445 0.38 +0.5
3,203,382 + AO353_14445 0.38 +0.0
3,203,383 - AO353_14445 0.38 +0.3
3,203,383 - AO353_14445 0.38 -0.1
3,203,538 + AO353_14445 0.53 -1.5
3,203,538 + AO353_14445 0.53 -1.8
3,203,538 + AO353_14445 0.53 +0.4
3,203,538 + AO353_14445 0.53 -0.9
3,203,539 - AO353_14445 0.53 -1.0
3,203,539 - AO353_14445 0.53 -1.6
3,203,539 - AO353_14445 0.53 -0.2
3,203,539 - AO353_14445 0.53 +2.0
3,203,564 + AO353_14445 0.55 -0.1
3,203,564 + AO353_14445 0.55 +0.4
3,203,565 - AO353_14445 0.55 -0.4
3,203,607 + AO353_14445 0.59 -0.3
3,203,607 + AO353_14445 0.59 -1.1
3,203,607 + AO353_14445 0.59 -0.7
3,203,607 + AO353_14445 0.59 -0.8
3,203,607 + AO353_14445 0.59 +3.4
3,203,607 + AO353_14445 0.59 -0.1
3,203,607 + AO353_14445 0.59 -1.5
3,203,607 + AO353_14445 0.59 -1.8
3,203,607 + AO353_14445 0.59 +3.5
3,203,608 - AO353_14445 0.59 +0.2
3,203,608 - AO353_14445 0.59 -0.8
3,204,001 + -0.1
3,204,001 + +1.8
3,204,002 - +2.1
3,204,002 - +1.2
3,204,002 - +1.8
3,204,002 - -1.1
3,204,002 - -0.3
3,204,002 - -0.5
3,204,002 - +2.3
3,204,002 - +0.4
3,204,003 + +0.3
3,204,003 + -0.1
3,204,003 + -0.1
3,204,003 + -1.4
3,204,003 + +0.9
3,204,003 + -2.6
3,204,004 - +2.0
3,204,004 - -1.3
3,204,004 - +1.2
3,204,013 + -1.4
3,204,013 + +0.8
3,204,014 - +0.4
3,204,014 - -0.3
3,204,152 - AO353_14450 0.16 -1.0
3,204,180 + AO353_14450 0.20 +0.4
3,204,180 + AO353_14450 0.20 +1.8
3,204,180 + AO353_14450 0.20 +3.3
3,204,180 + AO353_14450 0.20 +0.0
3,204,180 + AO353_14450 0.20 -0.6
3,204,180 + AO353_14450 0.20 +2.4
3,204,180 + AO353_14450 0.20 -2.6
3,204,181 - AO353_14450 0.20 -0.2
3,204,181 - AO353_14450 0.20 +0.3
3,204,181 - AO353_14450 0.20 +0.8
3,204,181 - AO353_14450 0.20 -1.0
3,204,222 + AO353_14450 0.25 +0.4
3,204,223 - AO353_14450 0.25 +3.8
3,204,223 - AO353_14450 0.25 -1.2
3,204,223 - AO353_14450 0.25 -0.1
3,204,420 - AO353_14450 0.51 +2.0
3,204,420 - AO353_14450 0.51 -2.1
3,204,420 - AO353_14450 0.51 -1.4
3,204,420 - AO353_14450 0.51 +4.3
3,204,837 + -0.6
3,204,838 - +1.0
3,204,908 - AO353_14455 0.12 -1.1
3,205,020 + AO353_14455 0.25 +1.1

Or see this region's nucleotide sequence