Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_12435

Experiment: outer cut, LB soft agar motility assay

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_12425 and AO353_12430 are separated by 57 nucleotidesAO353_12430 and AO353_12435 are separated by 287 nucleotidesAO353_12435 and AO353_12440 are separated by 1 nucleotides AO353_12425: AO353_12425 - ATP-dependent protease ATP-binding subunit HslU, at 2,731,789 to 2,733,129 _12425 AO353_12430: AO353_12430 - ATP-dependent protease subunit HslV, at 2,733,187 to 2,733,717 _12430 AO353_12435: AO353_12435 - cell division protein, at 2,734,005 to 2,734,706 _12435 AO353_12440: AO353_12440 - arginine--tRNA ligase, at 2,734,708 to 2,736,444 _12440 Position (kb) 2734 2735Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2733.189 kb on - strandat 2733.189 kb on - strandat 2733.189 kb on - strandat 2733.820 kb on + strandat 2733.820 kb on + strandat 2733.820 kb on + strandat 2733.820 kb on + strandat 2733.820 kb on + strandat 2733.820 kb on + strandat 2733.820 kb on + strandat 2733.821 kb on - strandat 2733.821 kb on - strandat 2733.821 kb on - strandat 2733.821 kb on - strandat 2733.821 kb on - strandat 2733.876 kb on - strandat 2733.919 kb on + strandat 2733.920 kb on - strandat 2733.920 kb on - strandat 2734.027 kb on - strandat 2734.027 kb on - strandat 2734.027 kb on - strandat 2734.027 kb on - strandat 2734.710 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay
remove
2,733,189 - +1.2
2,733,189 - +0.2
2,733,189 - +4.7
2,733,820 + +0.9
2,733,820 + +2.1
2,733,820 + -2.0
2,733,820 + -0.7
2,733,820 + -1.4
2,733,820 + +3.0
2,733,820 + -0.6
2,733,821 - +1.7
2,733,821 - +0.6
2,733,821 - +1.9
2,733,821 - +0.6
2,733,821 - +0.5
2,733,876 - -0.7
2,733,919 + -1.4
2,733,920 - +0.8
2,733,920 - +2.2
2,734,027 - -0.9
2,734,027 - -0.6
2,734,027 - +0.1
2,734,027 - -1.6
2,734,710 - -1.7

Or see this region's nucleotide sequence