Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_06705

Experiment: outer cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_06695 and AO353_06700 overlap by 4 nucleotidesAO353_06700 and AO353_06705 are separated by 90 nucleotidesAO353_06705 and AO353_06710 are separated by 31 nucleotidesAO353_06710 and AO353_06715 are separated by 48 nucleotides AO353_06695: AO353_06695 - antitermination protein NusB, at 1,491,754 to 1,492,254 _06695 AO353_06700: AO353_06700 - 6,7-dimethyl-8-ribityllumazine synthase, at 1,492,251 to 1,492,727 _06700 AO353_06705: AO353_06705 - 3,4-dihydroxy-2-butanone 4-phosphate synthase, at 1,492,818 to 1,493,909 _06705 AO353_06710: AO353_06710 - riboflavin synthase subunit alpha, at 1,493,941 to 1,494,603 _06710 AO353_06715: AO353_06715 - diaminohydroxyphosphoribosylaminopyrimidine deaminase, at 1,494,652 to 1,495,785 _06715 Position (kb) 1492 1493 1494Strain fitness (log2 ratio) -2 -1 0 1 2at 1492.742 kb on - strandat 1492.742 kb on - strandat 1492.781 kb on - strandat 1492.835 kb on - strandat 1492.835 kb on - strandat 1492.835 kb on - strandat 1492.835 kb on - strandat 1492.835 kb on - strandat 1492.835 kb on - strandat 1492.835 kb on - strandat 1492.835 kb on - strandat 1492.835 kb on - strandat 1492.835 kb on - strandat 1492.835 kb on - strandat 1494.026 kb on - strand, within AO353_06710at 1494.026 kb on - strand, within AO353_06710at 1494.026 kb on - strand, within AO353_06710at 1494.026 kb on - strand, within AO353_06710at 1494.653 kb on + strandat 1494.653 kb on + strandat 1494.654 kb on - strandat 1494.654 kb on - strandat 1494.654 kb on - strandat 1494.654 kb on - strandat 1494.654 kb on - strandat 1494.654 kb on - strandat 1494.654 kb on - strandat 1494.655 kb on + strandat 1494.655 kb on + strandat 1494.655 kb on + strandat 1494.655 kb on + strandat 1494.656 kb on - strandat 1494.656 kb on - strandat 1494.656 kb on - strandat 1494.656 kb on - strandat 1494.656 kb on - strandat 1494.656 kb on - strandat 1494.656 kb on - strandat 1494.656 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay
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1,492,742 - -1.6
1,492,742 - -1.0
1,492,781 - +1.1
1,492,835 - -0.0
1,492,835 - +0.1
1,492,835 - -1.3
1,492,835 - +1.9
1,492,835 - -1.4
1,492,835 - +0.3
1,492,835 - -1.1
1,492,835 - -0.7
1,492,835 - +0.6
1,492,835 - +1.9
1,492,835 - +0.3
1,494,026 - AO353_06710 0.13 +1.7
1,494,026 - AO353_06710 0.13 +1.5
1,494,026 - AO353_06710 0.13 +1.4
1,494,026 - AO353_06710 0.13 +0.7
1,494,653 + -0.7
1,494,653 + -0.9
1,494,654 - -0.5
1,494,654 - -0.0
1,494,654 - -0.8
1,494,654 - +1.4
1,494,654 - -1.5
1,494,654 - -0.3
1,494,654 - -0.9
1,494,655 + -2.1
1,494,655 + -2.5
1,494,655 + -0.5
1,494,655 + -1.0
1,494,656 - -0.0
1,494,656 - -2.2
1,494,656 - -2.5
1,494,656 - -1.6
1,494,656 - -2.2
1,494,656 - -0.0
1,494,656 - -1.7
1,494,656 - -1.0

Or see this region's nucleotide sequence