Experiment: outer cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_04400 and AO353_04405 are separated by 71 nucleotides AO353_04405 and AO353_04410 are separated by 102 nucleotides
AO353_04400: AO353_04400 - transporter, at 947,431 to 948,696
_04400
AO353_04405: AO353_04405 - MFS transporter, at 948,768 to 950,084
_04405
AO353_04410: AO353_04410 - phosphoribosylglycinamide formyltransferase, at 950,187 to 951,368
_04410
Position (kb) 948
949
950
951 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 947.816 kb on + strand, within AO353_04400 at 947.817 kb on - strand, within AO353_04400 at 947.822 kb on - strand, within AO353_04400 at 948.156 kb on + strand, within AO353_04400 at 948.232 kb on + strand, within AO353_04400 at 948.232 kb on + strand, within AO353_04400 at 948.232 kb on + strand, within AO353_04400 at 948.232 kb on + strand, within AO353_04400 at 948.232 kb on + strand, within AO353_04400 at 948.232 kb on + strand, within AO353_04400 at 948.232 kb on + strand, within AO353_04400 at 948.233 kb on - strand, within AO353_04400 at 948.233 kb on - strand, within AO353_04400 at 948.233 kb on - strand, within AO353_04400 at 948.233 kb on - strand, within AO353_04400 at 948.233 kb on - strand, within AO353_04400 at 948.233 kb on - strand, within AO353_04400 at 948.233 kb on - strand, within AO353_04400 at 948.233 kb on - strand, within AO353_04400 at 948.233 kb on - strand, within AO353_04400 at 948.233 kb on - strand, within AO353_04400 at 948.233 kb on - strand, within AO353_04400 at 948.319 kb on + strand, within AO353_04400 at 948.319 kb on + strand, within AO353_04400 at 948.319 kb on + strand, within AO353_04400 at 948.320 kb on - strand, within AO353_04400 at 948.329 kb on + strand, within AO353_04400 at 948.329 kb on + strand, within AO353_04400 at 948.329 kb on + strand, within AO353_04400 at 948.330 kb on - strand, within AO353_04400 at 948.330 kb on - strand, within AO353_04400 at 948.330 kb on - strand, within AO353_04400 at 948.330 kb on - strand, within AO353_04400 at 948.330 kb on - strand, within AO353_04400 at 948.330 kb on - strand, within AO353_04400 at 948.647 kb on + strand at 948.648 kb on - strand at 948.695 kb on - strand at 948.695 kb on - strand at 948.695 kb on - strand at 948.724 kb on - strand at 948.726 kb on + strand at 948.726 kb on + strand at 948.726 kb on + strand at 948.726 kb on + strand at 948.727 kb on - strand at 948.727 kb on - strand at 948.727 kb on - strand at 948.727 kb on - strand at 948.727 kb on - strand at 948.727 kb on - strand at 948.773 kb on + strand at 948.773 kb on + strand at 948.774 kb on - strand at 948.786 kb on + strand at 948.786 kb on + strand at 948.786 kb on + strand at 948.786 kb on + strand at 948.787 kb on - strand at 948.787 kb on - strand at 948.787 kb on - strand at 948.870 kb on + strand at 948.871 kb on - strand at 948.871 kb on - strand at 948.871 kb on - strand at 948.879 kb on + strand at 948.879 kb on + strand at 948.879 kb on + strand at 948.879 kb on + strand at 948.879 kb on + strand at 948.879 kb on + strand at 948.879 kb on + strand at 948.879 kb on + strand at 948.879 kb on + strand at 948.880 kb on - strand at 948.880 kb on - strand at 948.880 kb on - strand at 948.880 kb on - strand at 948.880 kb on - strand at 948.880 kb on - strand at 948.880 kb on - strand at 948.880 kb on - strand at 948.880 kb on - strand at 948.880 kb on - strand at 948.885 kb on + strand at 949.000 kb on + strand, within AO353_04405 at 949.001 kb on - strand, within AO353_04405 at 949.001 kb on - strand, within AO353_04405 at 949.114 kb on - strand, within AO353_04405 at 949.153 kb on + strand, within AO353_04405 at 949.153 kb on + strand, within AO353_04405 at 949.154 kb on - strand, within AO353_04405 at 949.154 kb on - strand, within AO353_04405 at 949.278 kb on - strand, within AO353_04405 at 949.404 kb on + strand, within AO353_04405 at 949.404 kb on + strand, within AO353_04405 at 949.404 kb on + strand, within AO353_04405 at 949.404 kb on + strand, within AO353_04405 at 949.405 kb on - strand, within AO353_04405 at 949.501 kb on - strand, within AO353_04405 at 949.558 kb on - strand, within AO353_04405 at 949.558 kb on - strand, within AO353_04405 at 949.558 kb on - strand, within AO353_04405 at 949.584 kb on + strand, within AO353_04405 at 949.584 kb on + strand, within AO353_04405 at 949.584 kb on + strand, within AO353_04405 at 949.585 kb on - strand, within AO353_04405 at 949.585 kb on - strand, within AO353_04405 at 949.585 kb on - strand, within AO353_04405 at 949.606 kb on - strand, within AO353_04405 at 949.606 kb on - strand, within AO353_04405 at 949.890 kb on - strand, within AO353_04405 at 949.908 kb on + strand, within AO353_04405 at 949.908 kb on + strand, within AO353_04405 at 949.908 kb on + strand, within AO353_04405 at 949.908 kb on + strand, within AO353_04405 at 949.908 kb on + strand, within AO353_04405 at 949.908 kb on + strand, within AO353_04405 at 949.908 kb on + strand, within AO353_04405 at 949.909 kb on - strand, within AO353_04405 at 949.998 kb on + strand at 949.998 kb on + strand at 949.998 kb on + strand at 949.999 kb on - strand at 949.999 kb on - strand at 949.999 kb on - strand at 950.060 kb on + strand at 950.060 kb on + strand at 950.060 kb on + strand at 950.061 kb on - strand at 950.061 kb on - strand at 950.085 kb on + strand at 950.085 kb on + strand at 950.086 kb on - strand at 950.086 kb on - strand at 950.086 kb on - strand at 950.086 kb on - strand at 950.116 kb on - strand at 950.116 kb on - strand at 950.121 kb on + strand at 950.121 kb on + strand at 950.121 kb on + strand at 950.121 kb on + strand at 950.121 kb on + strand at 950.121 kb on + strand at 950.121 kb on + strand at 950.121 kb on + strand at 950.121 kb on + strand at 950.121 kb on + strand at 950.121 kb on + strand at 950.121 kb on + strand at 950.122 kb on - strand at 950.122 kb on - strand at 950.122 kb on - strand at 950.122 kb on - strand at 950.122 kb on - strand at 950.160 kb on + strand at 950.161 kb on - strand at 950.188 kb on + strand at 950.188 kb on + strand at 950.188 kb on + strand at 950.188 kb on + strand at 950.188 kb on + strand at 950.189 kb on - strand at 950.196 kb on + strand at 950.196 kb on + strand at 950.196 kb on + strand at 950.196 kb on + strand at 950.196 kb on + strand at 950.197 kb on - strand at 950.197 kb on - strand at 950.197 kb on - strand at 950.778 kb on - strand, within AO353_04410 at 950.861 kb on + strand, within AO353_04410 at 950.961 kb on - strand, within AO353_04410 at 950.975 kb on - strand, within AO353_04410
Per-strain Table
Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay remove 947,816 + AO353_04400 0.30 +1.3 947,817 - AO353_04400 0.30 -1.6 947,822 - AO353_04400 0.31 +2.3 948,156 + AO353_04400 0.57 -0.3 948,232 + AO353_04400 0.63 +1.8 948,232 + AO353_04400 0.63 +0.5 948,232 + AO353_04400 0.63 +0.1 948,232 + AO353_04400 0.63 +0.3 948,232 + AO353_04400 0.63 +0.7 948,232 + AO353_04400 0.63 +1.7 948,232 + AO353_04400 0.63 -2.7 948,233 - AO353_04400 0.63 -0.7 948,233 - AO353_04400 0.63 -0.7 948,233 - AO353_04400 0.63 -0.8 948,233 - AO353_04400 0.63 -0.9 948,233 - AO353_04400 0.63 -0.6 948,233 - AO353_04400 0.63 -2.5 948,233 - AO353_04400 0.63 +1.1 948,233 - AO353_04400 0.63 -1.3 948,233 - AO353_04400 0.63 +0.7 948,233 - AO353_04400 0.63 -0.8 948,233 - AO353_04400 0.63 +0.0 948,319 + AO353_04400 0.70 -0.7 948,319 + AO353_04400 0.70 +0.5 948,319 + AO353_04400 0.70 -0.4 948,320 - AO353_04400 0.70 -1.4 948,329 + AO353_04400 0.71 -0.8 948,329 + AO353_04400 0.71 -1.3 948,329 + AO353_04400 0.71 -0.5 948,330 - AO353_04400 0.71 -1.5 948,330 - AO353_04400 0.71 +1.7 948,330 - AO353_04400 0.71 -0.4 948,330 - AO353_04400 0.71 -0.1 948,330 - AO353_04400 0.71 -2.5 948,330 - AO353_04400 0.71 -0.5 948,647 + +1.0 948,648 - -2.3 948,695 - -1.2 948,695 - +1.6 948,695 - -2.8 948,724 - -1.0 948,726 + -0.7 948,726 + -0.1 948,726 + -1.1 948,726 + +1.0 948,727 - +1.6 948,727 - +0.4 948,727 - -0.2 948,727 - -2.8 948,727 - +2.6 948,727 - +0.9 948,773 + +0.9 948,773 + -1.1 948,774 - -2.5 948,786 + +1.6 948,786 + -0.3 948,786 + -0.7 948,786 + +1.2 948,787 - -1.5 948,787 - -2.3 948,787 - -1.4 948,870 + +0.7 948,871 - +1.4 948,871 - +0.1 948,871 - +1.4 948,879 + +1.7 948,879 + +1.2 948,879 + +0.1 948,879 + -1.1 948,879 + -1.5 948,879 + -2.3 948,879 + -1.0 948,879 + +0.2 948,879 + -0.4 948,880 - +0.2 948,880 - +0.9 948,880 - -0.1 948,880 - +1.3 948,880 - -1.5 948,880 - +2.0 948,880 - -0.8 948,880 - -1.4 948,880 - -0.1 948,880 - -0.8 948,885 + -1.8 949,000 + AO353_04405 0.18 +2.1 949,001 - AO353_04405 0.18 -1.5 949,001 - AO353_04405 0.18 -1.6 949,114 - AO353_04405 0.26 -1.3 949,153 + AO353_04405 0.29 +2.3 949,153 + AO353_04405 0.29 +0.9 949,154 - AO353_04405 0.29 -0.3 949,154 - AO353_04405 0.29 +0.1 949,278 - AO353_04405 0.39 -0.8 949,404 + AO353_04405 0.48 +0.7 949,404 + AO353_04405 0.48 -1.7 949,404 + AO353_04405 0.48 -0.0 949,404 + AO353_04405 0.48 -1.1 949,405 - AO353_04405 0.48 +1.0 949,501 - AO353_04405 0.56 -0.3 949,558 - AO353_04405 0.60 +1.1 949,558 - AO353_04405 0.60 +4.1 949,558 - AO353_04405 0.60 -2.7 949,584 + AO353_04405 0.62 -1.7 949,584 + AO353_04405 0.62 -1.3 949,584 + AO353_04405 0.62 -1.2 949,585 - AO353_04405 0.62 +0.5 949,585 - AO353_04405 0.62 +0.7 949,585 - AO353_04405 0.62 -0.6 949,606 - AO353_04405 0.64 -2.5 949,606 - AO353_04405 0.64 -0.8 949,890 - AO353_04405 0.85 -0.0 949,908 + AO353_04405 0.87 -1.2 949,908 + AO353_04405 0.87 -0.1 949,908 + AO353_04405 0.87 -1.6 949,908 + AO353_04405 0.87 -0.8 949,908 + AO353_04405 0.87 +0.2 949,908 + AO353_04405 0.87 -0.5 949,908 + AO353_04405 0.87 -1.0 949,909 - AO353_04405 0.87 -0.9 949,998 + +1.0 949,998 + +0.7 949,998 + +0.7 949,999 - -1.9 949,999 - -0.8 949,999 - -3.5 950,060 + -0.3 950,060 + -0.6 950,060 + -0.9 950,061 - -1.5 950,061 - +3.8 950,085 + -1.4 950,085 + +0.1 950,086 - +2.1 950,086 - -0.9 950,086 - -0.8 950,086 - -0.9 950,116 - +1.1 950,116 - +4.6 950,121 + +1.9 950,121 + -1.2 950,121 + -1.2 950,121 + -0.7 950,121 + +0.3 950,121 + +2.0 950,121 + -0.4 950,121 + +1.3 950,121 + +0.7 950,121 + -1.3 950,121 + -0.7 950,121 + -0.5 950,122 - +0.3 950,122 - -1.5 950,122 - +1.5 950,122 - -1.9 950,122 - -1.5 950,160 + +1.3 950,161 - +2.3 950,188 + -1.0 950,188 + -1.1 950,188 + +0.0 950,188 + -0.4 950,188 + -1.0 950,189 - +1.3 950,196 + -1.3 950,196 + -0.3 950,196 + +0.1 950,196 + -1.3 950,196 + -1.6 950,197 - +0.8 950,197 - +0.3 950,197 - -0.2 950,778 - AO353_04410 0.50 +2.2 950,861 + AO353_04410 0.57 -2.4 950,961 - AO353_04410 0.65 -0.2 950,975 - AO353_04410 0.67 +0.1
Or see this region's nucleotide sequence