Experiment: outer cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_04105 and AO353_04110 are separated by 129 nucleotides AO353_04110 and AO353_04115 are separated by 156 nucleotides
AO353_04105: AO353_04105 - argininosuccinate synthase, at 881,199 to 882,416
_04105
AO353_04110: AO353_04110 - hypothetical protein, at 882,546 to 883,454
_04110
AO353_04115: AO353_04115 - dihydroorotase, at 883,611 to 884,657
_04115
Position (kb) 882
883
884 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 881.590 kb on + strand, within AO353_04105 at 881.617 kb on + strand, within AO353_04105 at 881.740 kb on + strand, within AO353_04105 at 881.740 kb on + strand, within AO353_04105 at 881.756 kb on - strand, within AO353_04105 at 881.756 kb on - strand, within AO353_04105 at 881.804 kb on + strand, within AO353_04105 at 881.804 kb on + strand, within AO353_04105 at 881.804 kb on + strand, within AO353_04105 at 881.804 kb on + strand, within AO353_04105 at 881.804 kb on + strand, within AO353_04105 at 881.804 kb on + strand, within AO353_04105 at 881.804 kb on + strand, within AO353_04105 at 881.804 kb on + strand, within AO353_04105 at 881.805 kb on - strand, within AO353_04105 at 881.805 kb on - strand, within AO353_04105 at 881.805 kb on - strand, within AO353_04105 at 881.805 kb on - strand, within AO353_04105 at 881.805 kb on - strand, within AO353_04105 at 881.805 kb on - strand, within AO353_04105 at 881.805 kb on - strand, within AO353_04105 at 881.828 kb on + strand, within AO353_04105 at 881.828 kb on + strand, within AO353_04105 at 881.829 kb on - strand, within AO353_04105 at 881.852 kb on - strand, within AO353_04105 at 881.938 kb on + strand, within AO353_04105 at 881.938 kb on + strand, within AO353_04105 at 882.017 kb on - strand, within AO353_04105 at 882.017 kb on - strand, within AO353_04105 at 882.143 kb on + strand, within AO353_04105 at 882.154 kb on + strand, within AO353_04105 at 882.154 kb on + strand, within AO353_04105 at 882.166 kb on + strand, within AO353_04105 at 882.235 kb on + strand, within AO353_04105 at 882.235 kb on + strand, within AO353_04105 at 882.235 kb on + strand, within AO353_04105 at 882.236 kb on - strand, within AO353_04105 at 882.246 kb on + strand, within AO353_04105 at 882.247 kb on - strand, within AO353_04105 at 882.332 kb on + strand at 882.332 kb on + strand at 882.332 kb on + strand at 882.332 kb on + strand at 882.332 kb on + strand at 882.332 kb on + strand at 882.332 kb on + strand at 882.333 kb on - strand at 882.333 kb on - strand at 882.333 kb on - strand at 882.333 kb on - strand at 882.333 kb on - strand at 882.333 kb on - strand at 882.333 kb on - strand at 882.333 kb on - strand at 882.333 kb on - strand at 882.333 kb on - strand at 882.333 kb on - strand at 882.333 kb on - strand at 882.334 kb on + strand at 882.334 kb on + strand at 882.334 kb on + strand at 882.334 kb on + strand at 882.334 kb on + strand at 882.334 kb on + strand at 882.334 kb on + strand at 882.334 kb on + strand at 882.334 kb on + strand at 882.334 kb on + strand at 882.334 kb on + strand at 882.334 kb on + strand at 882.334 kb on + strand at 882.334 kb on + strand at 882.334 kb on + strand at 882.334 kb on + strand at 882.334 kb on + strand at 882.335 kb on - strand at 882.335 kb on - strand at 882.335 kb on - strand at 882.335 kb on - strand at 882.335 kb on - strand at 882.335 kb on - strand at 882.335 kb on - strand at 882.335 kb on - strand at 882.335 kb on - strand at 882.335 kb on - strand at 882.335 kb on - strand at 882.335 kb on - strand at 882.335 kb on - strand at 882.335 kb on - strand at 882.335 kb on - strand at 882.335 kb on - strand at 882.335 kb on - strand at 882.335 kb on - strand at 882.335 kb on - strand at 882.339 kb on - strand at 882.386 kb on - strand at 882.386 kb on - strand at 882.405 kb on + strand at 882.405 kb on + strand at 882.405 kb on + strand at 882.405 kb on + strand at 882.406 kb on - strand at 882.406 kb on - strand at 882.406 kb on - strand at 882.406 kb on - strand at 882.406 kb on - strand at 882.406 kb on - strand at 882.477 kb on + strand at 882.477 kb on + strand at 882.495 kb on + strand at 882.495 kb on + strand at 882.495 kb on + strand at 882.495 kb on + strand at 882.495 kb on + strand at 882.495 kb on + strand at 882.495 kb on + strand at 882.516 kb on + strand at 882.516 kb on + strand at 882.516 kb on + strand at 882.517 kb on - strand at 882.517 kb on - strand at 882.517 kb on - strand at 882.517 kb on - strand at 882.517 kb on - strand at 882.596 kb on + strand at 882.952 kb on + strand, within AO353_04110 at 882.952 kb on + strand, within AO353_04110 at 882.953 kb on - strand, within AO353_04110 at 882.953 kb on - strand, within AO353_04110 at 882.989 kb on - strand, within AO353_04110 at 883.057 kb on + strand, within AO353_04110 at 883.057 kb on + strand, within AO353_04110 at 883.058 kb on - strand, within AO353_04110 at 883.058 kb on - strand, within AO353_04110 at 883.249 kb on + strand, within AO353_04110 at 883.249 kb on + strand, within AO353_04110 at 883.249 kb on + strand, within AO353_04110 at 883.250 kb on - strand, within AO353_04110 at 883.250 kb on - strand, within AO353_04110 at 883.250 kb on - strand, within AO353_04110 at 883.250 kb on - strand, within AO353_04110 at 883.437 kb on + strand at 883.437 kb on + strand at 883.437 kb on + strand at 883.441 kb on + strand at 883.441 kb on + strand at 883.441 kb on + strand at 883.441 kb on + strand at 883.442 kb on - strand at 883.442 kb on - strand at 883.442 kb on - strand at 883.442 kb on - strand at 883.442 kb on - strand at 883.442 kb on - strand at 883.442 kb on - strand at 883.474 kb on + strand at 883.474 kb on + strand at 883.474 kb on + strand at 883.475 kb on - strand at 883.475 kb on - strand at 883.475 kb on - strand at 883.475 kb on - strand at 883.492 kb on - strand at 883.497 kb on + strand at 883.497 kb on + strand at 883.497 kb on + strand at 883.497 kb on + strand at 883.497 kb on + strand at 883.497 kb on + strand at 883.497 kb on + strand at 883.497 kb on + strand at 883.497 kb on + strand at 883.497 kb on + strand at 883.497 kb on + strand at 883.497 kb on + strand at 883.497 kb on + strand at 883.497 kb on + strand at 883.497 kb on + strand at 883.497 kb on + strand at 883.497 kb on + strand at 883.497 kb on + strand at 883.497 kb on + strand at 883.498 kb on - strand at 883.498 kb on - strand at 883.498 kb on - strand at 883.498 kb on - strand at 883.498 kb on - strand at 883.498 kb on - strand at 883.498 kb on - strand at 883.498 kb on - strand at 883.498 kb on - strand at 883.498 kb on - strand at 883.498 kb on - strand at 883.498 kb on - strand at 883.498 kb on - strand at 883.498 kb on - strand at 883.498 kb on - strand at 883.498 kb on - strand at 883.498 kb on - strand at 883.498 kb on - strand at 883.498 kb on - strand at 883.498 kb on - strand at 883.498 kb on - strand at 883.498 kb on - strand at 883.498 kb on - strand at 883.501 kb on + strand at 883.501 kb on + strand at 883.501 kb on + strand at 883.501 kb on + strand at 883.501 kb on + strand at 883.502 kb on - strand at 883.502 kb on - strand at 883.502 kb on - strand at 883.502 kb on - strand at 883.502 kb on - strand at 883.502 kb on - strand at 883.502 kb on - strand at 883.508 kb on + strand at 883.508 kb on + strand at 883.508 kb on + strand at 883.508 kb on + strand at 883.508 kb on + strand at 883.508 kb on + strand at 883.508 kb on + strand at 883.508 kb on + strand at 883.508 kb on + strand at 883.509 kb on - strand at 883.509 kb on - strand at 883.509 kb on - strand at 883.519 kb on + strand at 883.652 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay remove 881,590 + AO353_04105 0.32 +1.4 881,617 + AO353_04105 0.34 +0.6 881,740 + AO353_04105 0.44 -0.5 881,740 + AO353_04105 0.44 -2.2 881,756 - AO353_04105 0.46 +2.1 881,756 - AO353_04105 0.46 -2.6 881,804 + AO353_04105 0.50 +1.0 881,804 + AO353_04105 0.50 +0.4 881,804 + AO353_04105 0.50 -0.6 881,804 + AO353_04105 0.50 +0.1 881,804 + AO353_04105 0.50 -1.1 881,804 + AO353_04105 0.50 -0.9 881,804 + AO353_04105 0.50 +3.4 881,804 + AO353_04105 0.50 +1.8 881,805 - AO353_04105 0.50 +0.6 881,805 - AO353_04105 0.50 -0.2 881,805 - AO353_04105 0.50 -2.1 881,805 - AO353_04105 0.50 -0.1 881,805 - AO353_04105 0.50 -1.5 881,805 - AO353_04105 0.50 -0.2 881,805 - AO353_04105 0.50 +1.6 881,828 + AO353_04105 0.52 -0.1 881,828 + AO353_04105 0.52 +0.9 881,829 - AO353_04105 0.52 -0.2 881,852 - AO353_04105 0.54 +1.5 881,938 + AO353_04105 0.61 +0.1 881,938 + AO353_04105 0.61 +1.2 882,017 - AO353_04105 0.67 +0.6 882,017 - AO353_04105 0.67 +0.9 882,143 + AO353_04105 0.78 -1.2 882,154 + AO353_04105 0.78 -1.5 882,154 + AO353_04105 0.78 -1.2 882,166 + AO353_04105 0.79 +0.4 882,235 + AO353_04105 0.85 +1.1 882,235 + AO353_04105 0.85 -1.2 882,235 + AO353_04105 0.85 -2.8 882,236 - AO353_04105 0.85 +1.0 882,246 + AO353_04105 0.86 +1.9 882,247 - AO353_04105 0.86 +0.9 882,332 + -0.9 882,332 + +0.6 882,332 + -1.0 882,332 + +1.4 882,332 + +0.5 882,332 + +1.0 882,332 + +1.7 882,333 - +0.3 882,333 - -2.5 882,333 - -1.1 882,333 - -1.4 882,333 - -1.5 882,333 - -0.4 882,333 - -0.4 882,333 - -2.2 882,333 - +0.4 882,333 - -0.4 882,333 - +2.2 882,333 - +0.4 882,334 + -1.6 882,334 + +2.0 882,334 + +0.6 882,334 + -2.0 882,334 + +0.9 882,334 + -0.9 882,334 + +2.5 882,334 + +0.6 882,334 + -0.0 882,334 + -2.1 882,334 + +4.5 882,334 + -0.2 882,334 + +0.1 882,334 + -1.1 882,334 + -1.7 882,334 + -0.8 882,334 + -2.0 882,335 - -1.5 882,335 - -1.5 882,335 - +0.1 882,335 - +1.4 882,335 - +3.1 882,335 - -0.9 882,335 - -1.8 882,335 - +1.6 882,335 - -1.1 882,335 - +2.7 882,335 - +2.0 882,335 - -1.5 882,335 - -0.6 882,335 - -1.1 882,335 - +1.4 882,335 - -0.6 882,335 - +0.8 882,335 - -1.3 882,335 - +1.6 882,339 - +0.6 882,386 - +0.9 882,386 - -2.1 882,405 + -0.4 882,405 + +1.8 882,405 + +0.4 882,405 + -0.1 882,406 - -0.6 882,406 - -2.1 882,406 - +1.2 882,406 - -1.2 882,406 - -0.2 882,406 - -1.5 882,477 + +0.1 882,477 + +0.3 882,495 + -1.8 882,495 + -0.3 882,495 + +0.0 882,495 + +0.9 882,495 + +0.4 882,495 + +1.3 882,495 + +1.1 882,516 + +0.5 882,516 + -0.1 882,516 + +2.1 882,517 - -0.6 882,517 - -0.5 882,517 - -0.8 882,517 - +0.4 882,517 - +2.3 882,596 + -1.4 882,952 + AO353_04110 0.45 -1.8 882,952 + AO353_04110 0.45 +0.3 882,953 - AO353_04110 0.45 +0.2 882,953 - AO353_04110 0.45 -0.8 882,989 - AO353_04110 0.49 +0.4 883,057 + AO353_04110 0.56 -0.9 883,057 + AO353_04110 0.56 -1.4 883,058 - AO353_04110 0.56 -0.9 883,058 - AO353_04110 0.56 -0.2 883,249 + AO353_04110 0.77 -1.3 883,249 + AO353_04110 0.77 -2.3 883,249 + AO353_04110 0.77 -1.7 883,250 - AO353_04110 0.77 -1.4 883,250 - AO353_04110 0.77 -2.1 883,250 - AO353_04110 0.77 -0.5 883,250 - AO353_04110 0.77 -1.6 883,437 + -0.5 883,437 + -1.8 883,437 + -0.6 883,441 + -0.1 883,441 + -3.2 883,441 + +1.9 883,441 + -2.6 883,442 - +0.9 883,442 - -0.8 883,442 - +0.2 883,442 - -1.4 883,442 - -2.2 883,442 - -1.1 883,442 - +5.3 883,474 + -0.7 883,474 + -1.3 883,474 + +0.8 883,475 - -1.1 883,475 - +0.7 883,475 - +0.6 883,475 - -0.2 883,492 - -2.1 883,497 + -0.4 883,497 + +0.9 883,497 + +0.6 883,497 + +0.2 883,497 + -0.5 883,497 + +0.1 883,497 + +0.9 883,497 + +0.2 883,497 + +0.9 883,497 + -1.2 883,497 + -3.0 883,497 + -1.1 883,497 + -2.4 883,497 + -0.4 883,497 + -1.5 883,497 + -2.0 883,497 + -1.7 883,497 + +2.4 883,497 + -1.4 883,498 - -1.3 883,498 - -3.4 883,498 - -0.8 883,498 - +1.7 883,498 - -1.9 883,498 - -1.2 883,498 - -1.8 883,498 - -0.8 883,498 - +1.5 883,498 - +0.8 883,498 - +0.1 883,498 - -1.7 883,498 - -0.6 883,498 - -2.1 883,498 - +2.2 883,498 - -0.8 883,498 - -1.2 883,498 - -2.4 883,498 - -0.4 883,498 - +0.9 883,498 - -1.1 883,498 - -1.2 883,498 - -1.7 883,501 + -1.6 883,501 + -1.2 883,501 + -3.2 883,501 + -2.0 883,501 + +0.4 883,502 - -1.2 883,502 - +0.4 883,502 - +1.2 883,502 - -2.0 883,502 - +1.6 883,502 - -0.5 883,502 - -2.3 883,508 + -3.0 883,508 + -1.7 883,508 + -1.1 883,508 + +0.1 883,508 + -0.6 883,508 + -0.1 883,508 + -1.1 883,508 + +1.6 883,508 + -0.2 883,509 - +0.2 883,509 - -1.8 883,509 - +0.4 883,519 + -1.3 883,652 + +0.6
Or see this region's nucleotide sequence