Experiment: outer cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_03955 and AO353_03960 overlap by 4 nucleotides AO353_03960 and AO353_03965 overlap by 4 nucleotides AO353_03965 and AO353_03970 are separated by 484 nucleotides
AO353_03955: AO353_03955 - hypothetical protein, at 843,888 to 847,160
_03955
AO353_03960: AO353_03960 - hypothetical protein, at 847,157 to 847,990
_03960
AO353_03965: AO353_03965 - type IV secretion protein Rhs, at 847,987 to 850,011
_03965
AO353_03970: AO353_03970 - diguanylate cyclase, at 850,496 to 852,547
_03970
Position (kb) 847
848
849
850
851 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8
9
10
11 at 847.038 kb on + strand at 847.038 kb on + strand at 847.039 kb on - strand at 847.039 kb on - strand at 847.039 kb on - strand at 847.073 kb on + strand at 847.074 kb on - strand at 847.074 kb on - strand at 847.074 kb on - strand at 847.074 kb on - strand at 847.160 kb on + strand at 847.160 kb on + strand at 847.161 kb on - strand at 847.161 kb on - strand at 847.253 kb on + strand, within AO353_03960 at 847.253 kb on + strand, within AO353_03960 at 847.253 kb on + strand, within AO353_03960 at 847.253 kb on + strand, within AO353_03960 at 847.254 kb on - strand, within AO353_03960 at 847.425 kb on + strand, within AO353_03960 at 847.425 kb on + strand, within AO353_03960 at 847.426 kb on - strand, within AO353_03960 at 847.437 kb on + strand, within AO353_03960 at 847.437 kb on + strand, within AO353_03960 at 847.437 kb on + strand, within AO353_03960 at 847.437 kb on + strand, within AO353_03960 at 847.438 kb on - strand, within AO353_03960 at 847.438 kb on - strand, within AO353_03960 at 847.438 kb on - strand, within AO353_03960 at 847.438 kb on - strand, within AO353_03960 at 847.438 kb on - strand, within AO353_03960 at 847.438 kb on - strand, within AO353_03960 at 847.438 kb on - strand, within AO353_03960 at 847.447 kb on + strand, within AO353_03960 at 847.447 kb on + strand, within AO353_03960 at 847.447 kb on + strand, within AO353_03960 at 847.447 kb on + strand, within AO353_03960 at 847.448 kb on - strand, within AO353_03960 at 847.448 kb on - strand, within AO353_03960 at 847.521 kb on + strand, within AO353_03960 at 847.521 kb on + strand, within AO353_03960 at 847.521 kb on + strand, within AO353_03960 at 847.521 kb on + strand, within AO353_03960 at 847.522 kb on - strand, within AO353_03960 at 847.522 kb on - strand, within AO353_03960 at 847.522 kb on - strand, within AO353_03960 at 847.522 kb on - strand, within AO353_03960 at 847.522 kb on - strand, within AO353_03960 at 847.522 kb on - strand, within AO353_03960 at 847.522 kb on - strand, within AO353_03960 at 847.522 kb on - strand, within AO353_03960 at 847.523 kb on + strand, within AO353_03960 at 847.542 kb on + strand, within AO353_03960 at 847.542 kb on + strand, within AO353_03960 at 847.543 kb on - strand, within AO353_03960 at 847.543 kb on - strand, within AO353_03960 at 847.680 kb on + strand, within AO353_03960 at 847.680 kb on + strand, within AO353_03960 at 847.680 kb on + strand, within AO353_03960 at 847.680 kb on + strand, within AO353_03960 at 847.681 kb on - strand, within AO353_03960 at 847.681 kb on - strand, within AO353_03960 at 847.681 kb on - strand, within AO353_03960 at 847.681 kb on - strand, within AO353_03960 at 847.681 kb on - strand, within AO353_03960 at 847.681 kb on - strand, within AO353_03960 at 847.683 kb on + strand, within AO353_03960 at 847.691 kb on + strand, within AO353_03960 at 847.691 kb on + strand, within AO353_03960 at 847.691 kb on + strand, within AO353_03960 at 847.692 kb on - strand, within AO353_03960 at 847.692 kb on - strand, within AO353_03960 at 847.736 kb on + strand, within AO353_03960 at 847.736 kb on + strand, within AO353_03960 at 847.737 kb on - strand, within AO353_03960 at 847.737 kb on - strand, within AO353_03960 at 847.810 kb on - strand, within AO353_03960 at 847.818 kb on + strand, within AO353_03960 at 847.818 kb on + strand, within AO353_03960 at 847.818 kb on + strand, within AO353_03960 at 847.819 kb on - strand, within AO353_03960 at 847.819 kb on - strand, within AO353_03960 at 847.819 kb on - strand, within AO353_03960 at 847.819 kb on - strand, within AO353_03960 at 847.819 kb on - strand, within AO353_03960 at 847.819 kb on - strand, within AO353_03960 at 847.831 kb on + strand, within AO353_03960 at 847.831 kb on + strand, within AO353_03960 at 847.831 kb on + strand, within AO353_03960 at 847.832 kb on - strand, within AO353_03960 at 847.874 kb on + strand, within AO353_03960 at 847.875 kb on - strand, within AO353_03960 at 847.875 kb on - strand, within AO353_03960 at 847.875 kb on - strand, within AO353_03960 at 847.875 kb on - strand, within AO353_03960 at 847.977 kb on + strand at 847.977 kb on + strand at 847.978 kb on - strand at 847.978 kb on - strand at 848.088 kb on + strand at 848.298 kb on + strand, within AO353_03965 at 848.343 kb on + strand, within AO353_03965 at 848.343 kb on + strand, within AO353_03965 at 848.343 kb on + strand, within AO353_03965 at 848.343 kb on + strand, within AO353_03965 at 848.344 kb on - strand, within AO353_03965 at 848.344 kb on - strand, within AO353_03965 at 848.377 kb on - strand, within AO353_03965 at 848.519 kb on + strand, within AO353_03965 at 848.574 kb on + strand, within AO353_03965 at 848.853 kb on - strand, within AO353_03965 at 848.945 kb on + strand, within AO353_03965 at 848.946 kb on - strand, within AO353_03965 at 848.954 kb on + strand, within AO353_03965 at 848.954 kb on + strand, within AO353_03965 at 848.954 kb on + strand, within AO353_03965 at 848.955 kb on - strand, within AO353_03965 at 848.955 kb on - strand, within AO353_03965 at 848.955 kb on - strand, within AO353_03965 at 849.085 kb on + strand, within AO353_03965 at 849.085 kb on + strand, within AO353_03965 at 849.086 kb on - strand, within AO353_03965 at 849.179 kb on + strand, within AO353_03965 at 849.179 kb on + strand, within AO353_03965 at 849.187 kb on - strand, within AO353_03965 at 849.260 kb on + strand, within AO353_03965 at 849.260 kb on + strand, within AO353_03965 at 849.261 kb on - strand, within AO353_03965 at 849.322 kb on + strand, within AO353_03965 at 849.323 kb on - strand, within AO353_03965 at 849.323 kb on - strand, within AO353_03965 at 849.332 kb on + strand, within AO353_03965 at 849.332 kb on + strand, within AO353_03965 at 849.332 kb on + strand, within AO353_03965 at 849.332 kb on + strand, within AO353_03965 at 849.333 kb on - strand, within AO353_03965 at 849.333 kb on - strand, within AO353_03965 at 849.333 kb on - strand, within AO353_03965 at 849.333 kb on - strand, within AO353_03965 at 849.333 kb on - strand, within AO353_03965 at 849.428 kb on + strand, within AO353_03965 at 849.475 kb on + strand, within AO353_03965 at 849.475 kb on + strand, within AO353_03965 at 849.520 kb on - strand, within AO353_03965 at 849.581 kb on + strand, within AO353_03965 at 849.581 kb on + strand, within AO353_03965 at 849.581 kb on + strand, within AO353_03965 at 849.581 kb on + strand, within AO353_03965 at 849.581 kb on + strand, within AO353_03965 at 849.581 kb on + strand, within AO353_03965 at 849.582 kb on - strand, within AO353_03965 at 849.582 kb on - strand, within AO353_03965 at 849.582 kb on - strand, within AO353_03965 at 849.716 kb on + strand, within AO353_03965 at 849.716 kb on + strand, within AO353_03965 at 849.716 kb on + strand, within AO353_03965 at 849.716 kb on + strand, within AO353_03965 at 849.717 kb on - strand, within AO353_03965 at 849.717 kb on - strand, within AO353_03965 at 849.717 kb on - strand, within AO353_03965 at 849.717 kb on - strand, within AO353_03965 at 849.905 kb on + strand at 849.905 kb on + strand at 849.906 kb on - strand at 849.906 kb on - strand at 849.993 kb on + strand at 849.993 kb on + strand at 850.011 kb on + strand at 850.011 kb on + strand at 850.011 kb on + strand at 850.011 kb on + strand at 850.011 kb on + strand at 850.011 kb on + strand at 850.011 kb on + strand at 850.011 kb on + strand at 850.011 kb on + strand at 850.011 kb on + strand at 850.011 kb on + strand at 850.011 kb on + strand at 850.012 kb on - strand at 850.012 kb on - strand at 850.012 kb on - strand at 850.012 kb on - strand at 850.012 kb on - strand at 850.012 kb on - strand at 850.023 kb on + strand at 850.024 kb on - strand at 850.120 kb on + strand at 850.120 kb on + strand at 850.120 kb on + strand at 850.120 kb on + strand at 850.120 kb on + strand at 850.121 kb on - strand at 850.121 kb on - strand at 850.121 kb on - strand at 850.121 kb on - strand at 850.121 kb on - strand at 850.137 kb on + strand at 850.137 kb on + strand at 850.137 kb on + strand at 850.234 kb on + strand at 850.278 kb on + strand at 850.279 kb on - strand at 850.279 kb on - strand at 850.298 kb on + strand at 850.298 kb on + strand at 850.298 kb on + strand at 850.298 kb on + strand at 850.333 kb on + strand at 850.344 kb on + strand at 850.344 kb on + strand at 850.344 kb on + strand at 850.344 kb on + strand at 850.345 kb on - strand at 850.347 kb on + strand at 850.347 kb on + strand at 850.347 kb on + strand at 850.348 kb on - strand at 850.348 kb on - strand at 850.348 kb on - strand at 850.357 kb on + strand at 850.358 kb on - strand at 850.358 kb on - strand at 850.358 kb on - strand at 850.358 kb on - strand at 850.449 kb on + strand at 850.450 kb on - strand at 850.450 kb on - strand at 850.607 kb on + strand at 850.607 kb on + strand at 850.607 kb on + strand at 850.607 kb on + strand at 850.608 kb on - strand at 850.608 kb on - strand at 850.609 kb on + strand at 850.609 kb on + strand at 850.609 kb on + strand at 850.609 kb on + strand at 850.609 kb on + strand at 850.609 kb on + strand at 850.610 kb on - strand at 850.610 kb on - strand at 850.685 kb on + strand at 850.685 kb on + strand at 850.685 kb on + strand at 850.685 kb on + strand at 850.685 kb on + strand at 850.686 kb on - strand at 850.686 kb on - strand at 850.686 kb on - strand at 850.686 kb on - strand at 850.840 kb on + strand, within AO353_03970 at 850.840 kb on + strand, within AO353_03970 at 850.841 kb on - strand, within AO353_03970 at 850.841 kb on - strand, within AO353_03970 at 850.841 kb on - strand, within AO353_03970 at 850.841 kb on - strand, within AO353_03970 at 850.841 kb on - strand, within AO353_03970 at 850.901 kb on + strand, within AO353_03970 at 850.901 kb on + strand, within AO353_03970 at 850.902 kb on - strand, within AO353_03970 at 850.904 kb on + strand, within AO353_03970 at 850.905 kb on - strand, within AO353_03970 at 850.905 kb on - strand, within AO353_03970 at 850.940 kb on + strand, within AO353_03970 at 850.940 kb on + strand, within AO353_03970 at 850.940 kb on + strand, within AO353_03970 at 850.940 kb on + strand, within AO353_03970 at 850.940 kb on + strand, within AO353_03970 at 850.940 kb on + strand, within AO353_03970 at 850.941 kb on - strand, within AO353_03970 at 850.941 kb on - strand, within AO353_03970 at 850.941 kb on - strand, within AO353_03970 at 850.941 kb on - strand, within AO353_03970 at 850.941 kb on - strand, within AO353_03970 at 850.954 kb on + strand, within AO353_03970 at 850.954 kb on + strand, within AO353_03970 at 850.955 kb on - strand, within AO353_03970 at 850.955 kb on - strand, within AO353_03970 at 850.955 kb on - strand, within AO353_03970 at 850.989 kb on + strand, within AO353_03970
Per-strain Table
Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay remove 847,038 + -2.7 847,038 + +0.0 847,039 - -1.9 847,039 - -0.3 847,039 - +0.1 847,073 + -2.0 847,074 - +1.6 847,074 - +1.6 847,074 - +1.1 847,074 - -1.0 847,160 + -0.2 847,160 + +0.6 847,161 - -1.2 847,161 - +1.0 847,253 + AO353_03960 0.12 +1.7 847,253 + AO353_03960 0.12 +0.8 847,253 + AO353_03960 0.12 -1.0 847,253 + AO353_03960 0.12 -0.5 847,254 - AO353_03960 0.12 +1.4 847,425 + AO353_03960 0.32 -0.1 847,425 + AO353_03960 0.32 +1.3 847,426 - AO353_03960 0.32 -2.4 847,437 + AO353_03960 0.34 -0.6 847,437 + AO353_03960 0.34 -1.6 847,437 + AO353_03960 0.34 +1.2 847,437 + AO353_03960 0.34 -1.5 847,438 - AO353_03960 0.34 -0.6 847,438 - AO353_03960 0.34 -1.8 847,438 - AO353_03960 0.34 -0.5 847,438 - AO353_03960 0.34 -0.9 847,438 - AO353_03960 0.34 -0.5 847,438 - AO353_03960 0.34 +3.2 847,438 - AO353_03960 0.34 -0.2 847,447 + AO353_03960 0.35 +1.6 847,447 + AO353_03960 0.35 -0.2 847,447 + AO353_03960 0.35 -0.1 847,447 + AO353_03960 0.35 +1.2 847,448 - AO353_03960 0.35 +0.2 847,448 - AO353_03960 0.35 -0.4 847,521 + AO353_03960 0.44 -0.6 847,521 + AO353_03960 0.44 -0.6 847,521 + AO353_03960 0.44 +3.3 847,521 + AO353_03960 0.44 -1.3 847,522 - AO353_03960 0.44 +0.6 847,522 - AO353_03960 0.44 -1.5 847,522 - AO353_03960 0.44 +1.9 847,522 - AO353_03960 0.44 -1.4 847,522 - AO353_03960 0.44 -0.8 847,522 - AO353_03960 0.44 -0.6 847,522 - AO353_03960 0.44 -0.4 847,522 - AO353_03960 0.44 -1.2 847,523 + AO353_03960 0.44 -2.6 847,542 + AO353_03960 0.46 -0.9 847,542 + AO353_03960 0.46 -1.0 847,543 - AO353_03960 0.46 +0.9 847,543 - AO353_03960 0.46 -0.1 847,680 + AO353_03960 0.63 +1.6 847,680 + AO353_03960 0.63 +0.8 847,680 + AO353_03960 0.63 +0.9 847,680 + AO353_03960 0.63 -0.6 847,681 - AO353_03960 0.63 -2.0 847,681 - AO353_03960 0.63 -0.9 847,681 - AO353_03960 0.63 +1.2 847,681 - AO353_03960 0.63 -0.5 847,681 - AO353_03960 0.63 +0.4 847,681 - AO353_03960 0.63 +0.3 847,683 + AO353_03960 0.63 -1.8 847,691 + AO353_03960 0.64 +1.5 847,691 + AO353_03960 0.64 -1.7 847,691 + AO353_03960 0.64 -0.3 847,692 - AO353_03960 0.64 -0.6 847,692 - AO353_03960 0.64 -1.2 847,736 + AO353_03960 0.69 +0.7 847,736 + AO353_03960 0.69 -0.4 847,737 - AO353_03960 0.70 -1.4 847,737 - AO353_03960 0.70 +0.0 847,810 - AO353_03960 0.78 -0.3 847,818 + AO353_03960 0.79 -1.8 847,818 + AO353_03960 0.79 +0.2 847,818 + AO353_03960 0.79 +1.2 847,819 - AO353_03960 0.79 -1.0 847,819 - AO353_03960 0.79 +2.6 847,819 - AO353_03960 0.79 +2.7 847,819 - AO353_03960 0.79 -1.0 847,819 - AO353_03960 0.79 -3.3 847,819 - AO353_03960 0.79 +2.9 847,831 + AO353_03960 0.81 +0.2 847,831 + AO353_03960 0.81 -0.1 847,831 + AO353_03960 0.81 -2.1 847,832 - AO353_03960 0.81 -2.8 847,874 + AO353_03960 0.86 -1.2 847,875 - AO353_03960 0.86 +1.5 847,875 - AO353_03960 0.86 -1.6 847,875 - AO353_03960 0.86 -0.6 847,875 - AO353_03960 0.86 +0.9 847,977 + -0.5 847,977 + +0.6 847,978 - +0.9 847,978 - +3.2 848,088 + +1.9 848,298 + AO353_03965 0.15 -1.1 848,343 + AO353_03965 0.18 +2.9 848,343 + AO353_03965 0.18 +1.5 848,343 + AO353_03965 0.18 +1.3 848,343 + AO353_03965 0.18 -1.6 848,344 - AO353_03965 0.18 -0.2 848,344 - AO353_03965 0.18 -0.6 848,377 - AO353_03965 0.19 +2.0 848,519 + AO353_03965 0.26 +0.1 848,574 + AO353_03965 0.29 +0.1 848,853 - AO353_03965 0.43 -1.0 848,945 + AO353_03965 0.47 +3.7 848,946 - AO353_03965 0.47 -0.4 848,954 + AO353_03965 0.48 +4.4 848,954 + AO353_03965 0.48 +2.5 848,954 + AO353_03965 0.48 +5.1 848,955 - AO353_03965 0.48 -0.9 848,955 - AO353_03965 0.48 +0.7 848,955 - AO353_03965 0.48 -0.6 849,085 + AO353_03965 0.54 +5.3 849,085 + AO353_03965 0.54 +5.5 849,086 - AO353_03965 0.54 -1.1 849,179 + AO353_03965 0.59 +4.3 849,179 + AO353_03965 0.59 +5.8 849,187 - AO353_03965 0.59 +0.3 849,260 + AO353_03965 0.63 +7.1 849,260 + AO353_03965 0.63 +3.3 849,261 - AO353_03965 0.63 +0.5 849,322 + AO353_03965 0.66 +5.7 849,323 - AO353_03965 0.66 -1.2 849,323 - AO353_03965 0.66 +0.4 849,332 + AO353_03965 0.66 +7.9 849,332 + AO353_03965 0.66 +3.5 849,332 + AO353_03965 0.66 +7.3 849,332 + AO353_03965 0.66 +6.3 849,333 - AO353_03965 0.66 -1.0 849,333 - AO353_03965 0.66 -2.1 849,333 - AO353_03965 0.66 +3.1 849,333 - AO353_03965 0.66 +1.1 849,333 - AO353_03965 0.66 -1.4 849,428 + AO353_03965 0.71 +1.4 849,475 + AO353_03965 0.73 +3.2 849,475 + AO353_03965 0.73 +7.1 849,520 - AO353_03965 0.76 -1.5 849,581 + AO353_03965 0.79 +3.9 849,581 + AO353_03965 0.79 +3.7 849,581 + AO353_03965 0.79 +6.0 849,581 + AO353_03965 0.79 +5.9 849,581 + AO353_03965 0.79 -0.2 849,581 + AO353_03965 0.79 +5.8 849,582 - AO353_03965 0.79 -2.1 849,582 - AO353_03965 0.79 +0.5 849,582 - AO353_03965 0.79 +2.1 849,716 + AO353_03965 0.85 +8.0 849,716 + AO353_03965 0.85 +4.5 849,716 + AO353_03965 0.85 +2.2 849,716 + AO353_03965 0.85 +2.6 849,717 - AO353_03965 0.85 -0.1 849,717 - AO353_03965 0.85 +0.3 849,717 - AO353_03965 0.85 +2.3 849,717 - AO353_03965 0.85 -0.5 849,905 + +7.2 849,905 + +7.1 849,906 - +1.7 849,906 - +1.9 849,993 + +3.2 849,993 + +7.5 850,011 + -1.1 850,011 + +6.6 850,011 + +11.0 850,011 + +5.8 850,011 + +4.3 850,011 + +6.5 850,011 + +1.1 850,011 + +5.1 850,011 + +5.5 850,011 + +6.3 850,011 + +6.9 850,011 + -0.9 850,012 - -0.5 850,012 - -0.1 850,012 - -1.4 850,012 - -0.1 850,012 - -0.1 850,012 - -1.0 850,023 + +5.8 850,024 - -0.4 850,120 + +6.1 850,120 + +5.0 850,120 + +6.6 850,120 + -1.5 850,120 + -1.3 850,121 - -0.2 850,121 - -1.4 850,121 - -0.6 850,121 - +3.4 850,121 - -0.1 850,137 + +3.7 850,137 + +5.5 850,137 + +5.9 850,234 + +6.9 850,278 + +3.6 850,279 - -0.9 850,279 - -0.8 850,298 + +8.5 850,298 + +8.4 850,298 + +9.1 850,298 + +6.1 850,333 + +7.1 850,344 + +5.3 850,344 + +5.8 850,344 + +7.6 850,344 + -1.5 850,345 - -0.8 850,347 + +6.2 850,347 + +10.5 850,347 + +1.1 850,348 - -0.1 850,348 - +1.5 850,348 - -0.6 850,357 + +5.0 850,358 - -1.3 850,358 - -0.0 850,358 - -0.3 850,358 - -1.2 850,449 + +5.1 850,450 - -1.8 850,450 - -0.1 850,607 + -1.2 850,607 + -1.3 850,607 + +1.4 850,607 + -2.1 850,608 - +0.4 850,608 - -0.9 850,609 + +1.1 850,609 + -1.3 850,609 + -1.4 850,609 + +0.1 850,609 + -1.1 850,609 + -0.9 850,610 - -1.7 850,610 - +1.2 850,685 + -1.4 850,685 + -1.7 850,685 + +0.2 850,685 + -0.1 850,685 + -1.1 850,686 - -0.3 850,686 - +1.3 850,686 - -1.1 850,686 - -2.3 850,840 + AO353_03970 0.17 -2.0 850,840 + AO353_03970 0.17 -0.5 850,841 - AO353_03970 0.17 -3.2 850,841 - AO353_03970 0.17 -1.0 850,841 - AO353_03970 0.17 -0.9 850,841 - AO353_03970 0.17 -1.2 850,841 - AO353_03970 0.17 -0.0 850,901 + AO353_03970 0.20 -1.4 850,901 + AO353_03970 0.20 -1.1 850,902 - AO353_03970 0.20 -0.2 850,904 + AO353_03970 0.20 +1.3 850,905 - AO353_03970 0.20 -0.1 850,905 - AO353_03970 0.20 -0.6 850,940 + AO353_03970 0.22 +0.0 850,940 + AO353_03970 0.22 -3.1 850,940 + AO353_03970 0.22 +0.1 850,940 + AO353_03970 0.22 +0.1 850,940 + AO353_03970 0.22 -0.6 850,940 + AO353_03970 0.22 -2.0 850,941 - AO353_03970 0.22 +0.6 850,941 - AO353_03970 0.22 -0.4 850,941 - AO353_03970 0.22 -1.6 850,941 - AO353_03970 0.22 +0.8 850,941 - AO353_03970 0.22 -1.1 850,954 + AO353_03970 0.22 -0.2 850,954 + AO353_03970 0.22 -0.9 850,955 - AO353_03970 0.22 +0.1 850,955 - AO353_03970 0.22 +1.9 850,955 - AO353_03970 0.22 -0.9 850,989 + AO353_03970 0.24 -0.6
Or see this region's nucleotide sequence