Experiment: outer cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_03035 and AO353_03040 are separated by 112 nucleotides AO353_03040 and AO353_03045 are separated by 36 nucleotides AO353_03045 and AO353_03050 overlap by 4 nucleotides AO353_03050 and AO353_03055 are separated by 91 nucleotides
AO353_03035: AO353_03035 - AraC family transcriptional regulator, at 648,028 to 649,008
_03035
AO353_03040: AO353_03040 - ABC transporter for L-Arginine and L-Citrulline, ATPase component <small>(from data)</small>, at 649,121 to 649,885
_03040
AO353_03045: AO353_03045 - ABC transporter for L-Arginine and L-Citrulline, permease component 1 <small>(from data)</small>, at 649,922 to 650,620
_03045
AO353_03050: AO353_03050 - ABC transporter for L-Arginine and L-Citrulline, permease component 2 <small>(from data)</small>, at 650,617 to 651,306
_03050
AO353_03055: AO353_03055 - ABC transporter for L-Arginine and L-Citrulline, periplasmic substrate-binding component <small>(from data)</small>, at 651,398 to 652,174
_03055
Position (kb) 649
650
651 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 648.966 kb on + strand at 649.037 kb on + strand at 649.064 kb on + strand at 649.065 kb on - strand at 649.065 kb on - strand at 649.097 kb on + strand at 649.098 kb on - strand at 649.098 kb on - strand at 649.098 kb on - strand at 649.122 kb on + strand at 649.122 kb on + strand at 649.122 kb on + strand at 649.122 kb on + strand at 649.122 kb on + strand at 649.123 kb on - strand at 649.123 kb on - strand at 649.123 kb on - strand at 649.438 kb on + strand, within AO353_03040 at 649.438 kb on + strand, within AO353_03040 at 649.438 kb on + strand, within AO353_03040 at 649.438 kb on + strand, within AO353_03040 at 649.438 kb on + strand, within AO353_03040 at 649.438 kb on + strand, within AO353_03040 at 649.438 kb on + strand, within AO353_03040 at 649.439 kb on - strand, within AO353_03040 at 649.439 kb on - strand, within AO353_03040 at 649.439 kb on - strand, within AO353_03040 at 649.439 kb on - strand, within AO353_03040 at 649.439 kb on - strand, within AO353_03040 at 649.439 kb on - strand, within AO353_03040 at 649.439 kb on - strand, within AO353_03040 at 649.439 kb on - strand, within AO353_03040 at 649.449 kb on + strand, within AO353_03040 at 649.450 kb on - strand, within AO353_03040 at 649.450 kb on - strand, within AO353_03040 at 649.459 kb on + strand, within AO353_03040 at 649.459 kb on + strand, within AO353_03040 at 649.488 kb on + strand, within AO353_03040 at 649.488 kb on + strand, within AO353_03040 at 649.488 kb on + strand, within AO353_03040 at 649.488 kb on + strand, within AO353_03040 at 649.488 kb on + strand, within AO353_03040 at 649.489 kb on - strand, within AO353_03040 at 649.489 kb on - strand, within AO353_03040 at 649.489 kb on - strand, within AO353_03040 at 649.756 kb on + strand, within AO353_03040 at 649.756 kb on + strand, within AO353_03040 at 649.757 kb on - strand, within AO353_03040 at 649.757 kb on - strand, within AO353_03040 at 649.757 kb on - strand, within AO353_03040 at 649.848 kb on + strand at 649.848 kb on + strand at 649.855 kb on + strand at 649.856 kb on - strand at 649.856 kb on - strand at 649.881 kb on + strand at 649.881 kb on + strand at 649.881 kb on + strand at 649.881 kb on + strand at 649.882 kb on - strand at 649.882 kb on - strand at 649.882 kb on - strand at 649.882 kb on - strand at 649.944 kb on + strand at 649.944 kb on + strand at 650.007 kb on + strand, within AO353_03045 at 650.007 kb on + strand, within AO353_03045 at 650.007 kb on + strand, within AO353_03045 at 650.007 kb on + strand, within AO353_03045 at 650.007 kb on + strand, within AO353_03045 at 650.007 kb on + strand, within AO353_03045 at 650.008 kb on - strand, within AO353_03045 at 650.008 kb on - strand, within AO353_03045 at 650.008 kb on - strand, within AO353_03045 at 650.008 kb on - strand, within AO353_03045 at 650.028 kb on + strand, within AO353_03045 at 650.028 kb on + strand, within AO353_03045 at 650.028 kb on + strand, within AO353_03045 at 650.028 kb on + strand, within AO353_03045 at 650.028 kb on + strand, within AO353_03045 at 650.028 kb on + strand, within AO353_03045 at 650.028 kb on + strand, within AO353_03045 at 650.028 kb on + strand, within AO353_03045 at 650.028 kb on + strand, within AO353_03045 at 650.028 kb on + strand, within AO353_03045 at 650.028 kb on + strand, within AO353_03045 at 650.028 kb on + strand, within AO353_03045 at 650.046 kb on + strand, within AO353_03045 at 650.046 kb on + strand, within AO353_03045 at 650.046 kb on + strand, within AO353_03045 at 650.046 kb on + strand, within AO353_03045 at 650.046 kb on + strand, within AO353_03045 at 650.047 kb on - strand, within AO353_03045 at 650.047 kb on - strand, within AO353_03045 at 650.047 kb on - strand, within AO353_03045 at 650.047 kb on - strand, within AO353_03045 at 650.047 kb on - strand, within AO353_03045 at 650.047 kb on - strand, within AO353_03045 at 650.047 kb on - strand, within AO353_03045 at 650.047 kb on - strand, within AO353_03045 at 650.047 kb on - strand, within AO353_03045 at 650.047 kb on - strand, within AO353_03045 at 650.047 kb on - strand, within AO353_03045 at 650.047 kb on - strand, within AO353_03045 at 650.047 kb on - strand, within AO353_03045 at 650.047 kb on - strand, within AO353_03045 at 650.049 kb on + strand, within AO353_03045 at 650.050 kb on - strand, within AO353_03045 at 650.050 kb on - strand, within AO353_03045 at 650.050 kb on - strand, within AO353_03045 at 650.196 kb on + strand, within AO353_03045 at 650.196 kb on + strand, within AO353_03045 at 650.197 kb on - strand, within AO353_03045 at 650.197 kb on - strand, within AO353_03045 at 650.197 kb on - strand, within AO353_03045 at 650.197 kb on - strand, within AO353_03045 at 650.290 kb on - strand, within AO353_03045 at 650.369 kb on + strand, within AO353_03045 at 650.394 kb on + strand, within AO353_03045 at 650.394 kb on + strand, within AO353_03045 at 650.395 kb on - strand, within AO353_03045 at 650.395 kb on - strand, within AO353_03045 at 650.395 kb on - strand, within AO353_03045 at 650.395 kb on - strand, within AO353_03045 at 650.395 kb on - strand, within AO353_03045 at 650.395 kb on - strand, within AO353_03045 at 650.397 kb on + strand, within AO353_03045 at 650.397 kb on + strand, within AO353_03045 at 650.397 kb on + strand, within AO353_03045 at 650.398 kb on - strand, within AO353_03045 at 650.442 kb on + strand, within AO353_03045 at 650.442 kb on + strand, within AO353_03045 at 650.442 kb on + strand, within AO353_03045 at 650.442 kb on + strand, within AO353_03045 at 650.442 kb on + strand, within AO353_03045 at 650.442 kb on + strand, within AO353_03045 at 650.443 kb on - strand, within AO353_03045 at 650.443 kb on - strand, within AO353_03045 at 650.443 kb on - strand, within AO353_03045 at 650.443 kb on - strand, within AO353_03045 at 650.443 kb on - strand, within AO353_03045 at 650.443 kb on - strand, within AO353_03045 at 650.449 kb on - strand, within AO353_03045 at 650.449 kb on - strand, within AO353_03045 at 650.449 kb on - strand, within AO353_03045 at 650.578 kb on - strand at 650.607 kb on + strand at 650.608 kb on - strand at 650.608 kb on - strand at 650.608 kb on - strand at 650.608 kb on - strand at 650.620 kb on + strand at 650.620 kb on + strand at 650.620 kb on + strand at 650.620 kb on + strand at 650.620 kb on + strand at 650.620 kb on + strand at 650.620 kb on + strand at 650.620 kb on + strand at 650.621 kb on - strand at 650.621 kb on - strand at 650.621 kb on - strand at 650.621 kb on - strand at 650.621 kb on - strand at 650.621 kb on - strand at 650.621 kb on - strand at 650.621 kb on - strand at 650.621 kb on - strand at 650.636 kb on - strand at 650.648 kb on + strand at 650.702 kb on + strand at 650.702 kb on + strand, within AO353_03050 at 650.702 kb on + strand, within AO353_03050 at 650.702 kb on + strand, within AO353_03050 at 650.702 kb on + strand, within AO353_03050 at 650.703 kb on - strand, within AO353_03050 at 650.703 kb on - strand, within AO353_03050 at 650.703 kb on - strand, within AO353_03050 at 650.835 kb on + strand, within AO353_03050 at 650.841 kb on + strand, within AO353_03050 at 650.842 kb on - strand, within AO353_03050 at 650.916 kb on - strand, within AO353_03050 at 650.984 kb on + strand, within AO353_03050 at 650.984 kb on + strand, within AO353_03050 at 650.984 kb on + strand, within AO353_03050 at 650.985 kb on - strand, within AO353_03050 at 650.985 kb on - strand, within AO353_03050 at 651.044 kb on + strand, within AO353_03050 at 651.044 kb on + strand, within AO353_03050 at 651.044 kb on + strand, within AO353_03050 at 651.045 kb on - strand, within AO353_03050 at 651.045 kb on - strand, within AO353_03050 at 651.045 kb on - strand, within AO353_03050 at 651.045 kb on - strand, within AO353_03050 at 651.152 kb on + strand, within AO353_03050 at 651.153 kb on - strand, within AO353_03050 at 651.153 kb on - strand, within AO353_03050 at 651.153 kb on - strand, within AO353_03050 at 651.153 kb on - strand, within AO353_03050 at 651.153 kb on - strand, within AO353_03050 at 651.153 kb on - strand, within AO353_03050 at 651.395 kb on + strand at 651.395 kb on + strand at 651.395 kb on + strand at 651.395 kb on + strand at 651.396 kb on - strand at 651.396 kb on - strand at 651.399 kb on + strand at 651.399 kb on + strand at 651.399 kb on + strand at 651.399 kb on + strand at 651.399 kb on + strand at 651.399 kb on + strand at 651.399 kb on + strand at 651.399 kb on + strand at 651.399 kb on + strand at 651.399 kb on + strand at 651.399 kb on + strand at 651.399 kb on + strand at 651.399 kb on + strand at 651.399 kb on + strand at 651.400 kb on - strand at 651.400 kb on - strand at 651.400 kb on - strand at 651.400 kb on - strand at 651.400 kb on - strand at 651.403 kb on + strand at 651.408 kb on + strand at 651.408 kb on + strand at 651.409 kb on - strand at 651.412 kb on + strand at 651.426 kb on + strand at 651.426 kb on + strand at 651.427 kb on - strand at 651.427 kb on - strand at 651.427 kb on - strand at 651.427 kb on - strand at 651.427 kb on - strand at 651.427 kb on - strand at 651.447 kb on + strand at 651.448 kb on - strand at 651.448 kb on - strand at 651.448 kb on - strand at 651.526 kb on + strand, within AO353_03055 at 651.547 kb on - strand, within AO353_03055 at 651.547 kb on - strand, within AO353_03055 at 651.547 kb on - strand, within AO353_03055 at 651.547 kb on - strand, within AO353_03055 at 651.547 kb on - strand, within AO353_03055 at 651.547 kb on - strand, within AO353_03055
Per-strain Table
Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay remove 648,966 + -0.4 649,037 + +1.8 649,064 + +1.2 649,065 - -1.1 649,065 - +1.3 649,097 + +0.4 649,098 - -0.2 649,098 - +0.5 649,098 - +1.0 649,122 + +0.7 649,122 + -1.8 649,122 + -0.8 649,122 + -1.2 649,122 + -0.0 649,123 - -1.3 649,123 - +0.7 649,123 - -1.7 649,438 + AO353_03040 0.41 -1.8 649,438 + AO353_03040 0.41 +2.4 649,438 + AO353_03040 0.41 -0.0 649,438 + AO353_03040 0.41 +0.7 649,438 + AO353_03040 0.41 +2.8 649,438 + AO353_03040 0.41 -2.3 649,438 + AO353_03040 0.41 -2.8 649,439 - AO353_03040 0.42 -1.9 649,439 - AO353_03040 0.42 -2.4 649,439 - AO353_03040 0.42 -2.1 649,439 - AO353_03040 0.42 -1.9 649,439 - AO353_03040 0.42 -0.6 649,439 - AO353_03040 0.42 -2.3 649,439 - AO353_03040 0.42 -0.8 649,439 - AO353_03040 0.42 +2.3 649,449 + AO353_03040 0.43 +3.1 649,450 - AO353_03040 0.43 -0.5 649,450 - AO353_03040 0.43 +0.2 649,459 + AO353_03040 0.44 +1.8 649,459 + AO353_03040 0.44 +0.7 649,488 + AO353_03040 0.48 -0.2 649,488 + AO353_03040 0.48 +0.3 649,488 + AO353_03040 0.48 -3.4 649,488 + AO353_03040 0.48 -0.9 649,488 + AO353_03040 0.48 -1.6 649,489 - AO353_03040 0.48 -2.1 649,489 - AO353_03040 0.48 +0.7 649,489 - AO353_03040 0.48 +1.5 649,756 + AO353_03040 0.83 -1.1 649,756 + AO353_03040 0.83 +1.0 649,757 - AO353_03040 0.83 -0.7 649,757 - AO353_03040 0.83 -0.1 649,757 - AO353_03040 0.83 +0.6 649,848 + -1.7 649,848 + -1.2 649,855 + +0.9 649,856 - -0.8 649,856 - -1.7 649,881 + -1.9 649,881 + +0.9 649,881 + -1.9 649,881 + -1.5 649,882 - +2.1 649,882 - +2.5 649,882 - -0.6 649,882 - -1.5 649,944 + -0.2 649,944 + +0.5 650,007 + AO353_03045 0.12 -0.7 650,007 + AO353_03045 0.12 -0.8 650,007 + AO353_03045 0.12 +1.8 650,007 + AO353_03045 0.12 +2.6 650,007 + AO353_03045 0.12 -0.1 650,007 + AO353_03045 0.12 -1.3 650,008 - AO353_03045 0.12 +0.2 650,008 - AO353_03045 0.12 -1.3 650,008 - AO353_03045 0.12 -1.7 650,008 - AO353_03045 0.12 -1.0 650,028 + AO353_03045 0.15 -0.7 650,028 + AO353_03045 0.15 -0.7 650,028 + AO353_03045 0.15 -0.7 650,028 + AO353_03045 0.15 +1.5 650,028 + AO353_03045 0.15 +1.1 650,028 + AO353_03045 0.15 -0.4 650,028 + AO353_03045 0.15 -3.0 650,028 + AO353_03045 0.15 -2.0 650,028 + AO353_03045 0.15 +2.1 650,028 + AO353_03045 0.15 -0.5 650,028 + AO353_03045 0.15 -0.6 650,028 + AO353_03045 0.15 -1.5 650,046 + AO353_03045 0.18 -0.4 650,046 + AO353_03045 0.18 -1.2 650,046 + AO353_03045 0.18 -2.5 650,046 + AO353_03045 0.18 -0.9 650,046 + AO353_03045 0.18 +0.7 650,047 - AO353_03045 0.18 -1.0 650,047 - AO353_03045 0.18 +0.5 650,047 - AO353_03045 0.18 -2.1 650,047 - AO353_03045 0.18 -0.9 650,047 - AO353_03045 0.18 -1.3 650,047 - AO353_03045 0.18 +1.1 650,047 - AO353_03045 0.18 -1.2 650,047 - AO353_03045 0.18 -2.2 650,047 - AO353_03045 0.18 -0.9 650,047 - AO353_03045 0.18 +0.6 650,047 - AO353_03045 0.18 -2.6 650,047 - AO353_03045 0.18 -0.5 650,047 - AO353_03045 0.18 +1.2 650,047 - AO353_03045 0.18 +2.2 650,049 + AO353_03045 0.18 -2.3 650,050 - AO353_03045 0.18 -0.5 650,050 - AO353_03045 0.18 -0.9 650,050 - AO353_03045 0.18 -0.7 650,196 + AO353_03045 0.39 +2.0 650,196 + AO353_03045 0.39 -2.1 650,197 - AO353_03045 0.39 -2.3 650,197 - AO353_03045 0.39 +1.4 650,197 - AO353_03045 0.39 -1.8 650,197 - AO353_03045 0.39 +0.8 650,290 - AO353_03045 0.53 -2.6 650,369 + AO353_03045 0.64 -0.4 650,394 + AO353_03045 0.68 -0.4 650,394 + AO353_03045 0.68 +1.7 650,395 - AO353_03045 0.68 -1.8 650,395 - AO353_03045 0.68 +0.9 650,395 - AO353_03045 0.68 -2.5 650,395 - AO353_03045 0.68 -1.3 650,395 - AO353_03045 0.68 -3.2 650,395 - AO353_03045 0.68 -1.2 650,397 + AO353_03045 0.68 +0.9 650,397 + AO353_03045 0.68 +0.2 650,397 + AO353_03045 0.68 -1.3 650,398 - AO353_03045 0.68 -1.5 650,442 + AO353_03045 0.74 -1.1 650,442 + AO353_03045 0.74 -0.9 650,442 + AO353_03045 0.74 +2.8 650,442 + AO353_03045 0.74 -1.4 650,442 + AO353_03045 0.74 +1.4 650,442 + AO353_03045 0.74 +1.8 650,443 - AO353_03045 0.75 +0.2 650,443 - AO353_03045 0.75 -0.8 650,443 - AO353_03045 0.75 +0.2 650,443 - AO353_03045 0.75 -1.0 650,443 - AO353_03045 0.75 -1.8 650,443 - AO353_03045 0.75 +1.3 650,449 - AO353_03045 0.75 -0.0 650,449 - AO353_03045 0.75 +0.2 650,449 - AO353_03045 0.75 -0.7 650,578 - -1.8 650,607 + +0.5 650,608 - -1.5 650,608 - -0.2 650,608 - -0.0 650,608 - +1.8 650,620 + -0.9 650,620 + +0.2 650,620 + -0.2 650,620 + -2.0 650,620 + -2.1 650,620 + +0.8 650,620 + -3.0 650,620 + +1.8 650,621 - -0.2 650,621 - +0.8 650,621 - +0.8 650,621 - -0.2 650,621 - -0.9 650,621 - +2.0 650,621 - +0.3 650,621 - -2.3 650,621 - -2.2 650,636 - +2.0 650,648 + -2.1 650,702 + +1.2 650,702 + AO353_03050 0.12 -0.6 650,702 + AO353_03050 0.12 +1.6 650,702 + AO353_03050 0.12 -0.8 650,702 + AO353_03050 0.12 -2.3 650,703 - AO353_03050 0.12 -1.0 650,703 - AO353_03050 0.12 -1.1 650,703 - AO353_03050 0.12 -0.4 650,835 + AO353_03050 0.32 +1.2 650,841 + AO353_03050 0.32 -0.4 650,842 - AO353_03050 0.33 -0.0 650,916 - AO353_03050 0.43 +1.8 650,984 + AO353_03050 0.53 -1.7 650,984 + AO353_03050 0.53 +0.6 650,984 + AO353_03050 0.53 -2.1 650,985 - AO353_03050 0.53 -2.6 650,985 - AO353_03050 0.53 -0.5 651,044 + AO353_03050 0.62 -0.6 651,044 + AO353_03050 0.62 -1.2 651,044 + AO353_03050 0.62 -0.0 651,045 - AO353_03050 0.62 -2.0 651,045 - AO353_03050 0.62 +1.7 651,045 - AO353_03050 0.62 -2.4 651,045 - AO353_03050 0.62 -1.1 651,152 + AO353_03050 0.78 -1.2 651,153 - AO353_03050 0.78 +1.2 651,153 - AO353_03050 0.78 -1.1 651,153 - AO353_03050 0.78 -1.0 651,153 - AO353_03050 0.78 +1.0 651,153 - AO353_03050 0.78 -0.4 651,153 - AO353_03050 0.78 -2.5 651,395 + -0.8 651,395 + +1.2 651,395 + +0.3 651,395 + -1.0 651,396 - +1.3 651,396 - +0.2 651,399 + +0.7 651,399 + +1.5 651,399 + +2.0 651,399 + -1.3 651,399 + +3.2 651,399 + +0.6 651,399 + +0.7 651,399 + +0.3 651,399 + -0.9 651,399 + +3.3 651,399 + -2.4 651,399 + +1.1 651,399 + -0.2 651,399 + +0.5 651,400 - +1.0 651,400 - -1.2 651,400 - -0.5 651,400 - +0.5 651,400 - +1.6 651,403 + -0.8 651,408 + +0.5 651,408 + -0.9 651,409 - +1.8 651,412 + -2.5 651,426 + -2.5 651,426 + -1.7 651,427 - +1.9 651,427 - +1.0 651,427 - -2.4 651,427 - +0.3 651,427 - -0.1 651,427 - +1.3 651,447 + +0.4 651,448 - -0.9 651,448 - +0.0 651,448 - -0.1 651,526 + AO353_03055 0.16 -1.6 651,547 - AO353_03055 0.19 +1.4 651,547 - AO353_03055 0.19 +0.9 651,547 - AO353_03055 0.19 -0.1 651,547 - AO353_03055 0.19 -1.1 651,547 - AO353_03055 0.19 -2.3 651,547 - AO353_03055 0.19 -0.2
Or see this region's nucleotide sequence