Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_01305

Experiment: outer cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_01295 and AO353_01300 are separated by 45 nucleotidesAO353_01300 and AO353_01305 are separated by 17 nucleotidesAO353_01305 and AO353_01310 are separated by 248 nucleotides AO353_01295: AO353_01295 - alpha/beta hydrolase, at 281,846 to 282,718 _01295 AO353_01300: AO353_01300 - proteophosphoglycan precursor, at 282,764 to 283,324 _01300 AO353_01305: AO353_01305 - hypothetical protein, at 283,342 to 283,947 _01305 AO353_01310: AO353_01310 - radical SAM protein, at 284,196 to 285,164 _01310 Position (kb) 283 284Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 282.431 kb on + strand, within AO353_01295at 282.431 kb on + strand, within AO353_01295at 282.431 kb on + strand, within AO353_01295at 282.431 kb on + strand, within AO353_01295at 282.431 kb on + strand, within AO353_01295at 282.431 kb on + strand, within AO353_01295at 282.431 kb on + strand, within AO353_01295at 282.432 kb on - strand, within AO353_01295at 282.432 kb on - strand, within AO353_01295at 282.432 kb on - strand, within AO353_01295at 282.434 kb on + strand, within AO353_01295at 282.434 kb on + strand, within AO353_01295at 282.434 kb on + strand, within AO353_01295at 282.434 kb on + strand, within AO353_01295at 282.434 kb on + strand, within AO353_01295at 282.434 kb on + strand, within AO353_01295at 282.434 kb on + strand, within AO353_01295at 282.434 kb on + strand, within AO353_01295at 282.434 kb on + strand, within AO353_01295at 282.434 kb on + strand, within AO353_01295at 282.434 kb on + strand, within AO353_01295at 282.434 kb on + strand, within AO353_01295at 282.434 kb on + strand, within AO353_01295at 282.434 kb on + strand, within AO353_01295at 282.434 kb on + strand, within AO353_01295at 282.435 kb on - strand, within AO353_01295at 282.435 kb on - strand, within AO353_01295at 282.435 kb on - strand, within AO353_01295at 282.435 kb on - strand, within AO353_01295at 282.435 kb on - strand, within AO353_01295at 282.435 kb on - strand, within AO353_01295at 282.437 kb on + strand, within AO353_01295at 282.437 kb on + strand, within AO353_01295at 282.437 kb on + strand, within AO353_01295at 282.437 kb on + strand, within AO353_01295at 282.437 kb on + strand, within AO353_01295at 282.437 kb on + strand, within AO353_01295at 282.437 kb on + strand, within AO353_01295at 282.437 kb on + strand, within AO353_01295at 282.437 kb on + strand, within AO353_01295at 282.438 kb on - strand, within AO353_01295at 282.522 kb on + strand, within AO353_01295at 282.523 kb on - strand, within AO353_01295at 282.528 kb on - strand, within AO353_01295at 282.528 kb on - strand, within AO353_01295at 282.529 kb on + strand, within AO353_01295at 282.529 kb on + strand, within AO353_01295at 282.567 kb on - strand, within AO353_01295at 282.677 kb on + strandat 282.677 kb on + strandat 282.677 kb on + strandat 282.677 kb on + strandat 282.678 kb on - strandat 282.716 kb on + strandat 282.716 kb on + strandat 282.717 kb on - strandat 282.717 kb on - strandat 282.717 kb on - strandat 282.717 kb on - strandat 282.717 kb on - strandat 282.717 kb on - strandat 282.717 kb on - strandat 282.765 kb on + strandat 282.864 kb on + strand, within AO353_01300at 282.864 kb on + strand, within AO353_01300at 282.864 kb on + strand, within AO353_01300at 282.864 kb on + strand, within AO353_01300at 282.864 kb on + strand, within AO353_01300at 282.864 kb on + strand, within AO353_01300at 282.865 kb on - strand, within AO353_01300at 282.865 kb on - strand, within AO353_01300at 282.865 kb on - strand, within AO353_01300at 282.865 kb on - strand, within AO353_01300at 282.865 kb on - strand, within AO353_01300at 282.905 kb on + strand, within AO353_01300at 282.905 kb on + strand, within AO353_01300at 282.905 kb on + strand, within AO353_01300at 282.905 kb on + strand, within AO353_01300at 282.905 kb on + strand, within AO353_01300at 282.905 kb on + strand, within AO353_01300at 282.905 kb on + strand, within AO353_01300at 282.905 kb on + strand, within AO353_01300at 282.905 kb on + strand, within AO353_01300at 282.905 kb on + strand, within AO353_01300at 282.905 kb on + strand, within AO353_01300at 282.905 kb on + strand, within AO353_01300at 282.905 kb on + strand, within AO353_01300at 282.906 kb on - strand, within AO353_01300at 282.906 kb on - strand, within AO353_01300at 282.906 kb on - strand, within AO353_01300at 282.906 kb on - strand, within AO353_01300at 282.906 kb on - strand, within AO353_01300at 282.915 kb on + strand, within AO353_01300at 282.915 kb on + strand, within AO353_01300at 282.915 kb on + strand, within AO353_01300at 282.915 kb on + strand, within AO353_01300at 282.915 kb on + strand, within AO353_01300at 282.916 kb on - strand, within AO353_01300at 282.916 kb on - strand, within AO353_01300at 283.102 kb on + strand, within AO353_01300at 283.102 kb on + strand, within AO353_01300at 283.103 kb on - strand, within AO353_01300at 283.113 kb on + strand, within AO353_01300at 283.113 kb on + strand, within AO353_01300at 283.113 kb on + strand, within AO353_01300at 283.113 kb on + strand, within AO353_01300at 283.113 kb on + strand, within AO353_01300at 283.113 kb on + strand, within AO353_01300at 283.113 kb on + strand, within AO353_01300at 283.114 kb on - strand, within AO353_01300at 283.114 kb on - strand, within AO353_01300at 283.114 kb on - strand, within AO353_01300at 283.114 kb on - strand, within AO353_01300at 283.114 kb on - strand, within AO353_01300at 283.114 kb on - strand, within AO353_01300at 283.114 kb on - strand, within AO353_01300at 283.114 kb on - strand, within AO353_01300at 283.188 kb on + strand, within AO353_01300at 283.188 kb on + strand, within AO353_01300at 283.188 kb on + strand, within AO353_01300at 283.189 kb on - strand, within AO353_01300at 283.189 kb on - strand, within AO353_01300at 283.189 kb on - strandat 283.191 kb on + strand, within AO353_01300at 283.191 kb on + strand, within AO353_01300at 283.191 kb on + strand, within AO353_01300at 283.192 kb on - strand, within AO353_01300at 283.192 kb on - strand, within AO353_01300at 283.303 kb on + strandat 283.303 kb on + strandat 283.303 kb on + strandat 283.303 kb on + strandat 283.304 kb on - strandat 283.304 kb on - strandat 283.304 kb on - strandat 283.344 kb on - strandat 283.344 kb on - strandat 283.376 kb on + strandat 283.376 kb on + strandat 283.377 kb on - strandat 283.432 kb on + strand, within AO353_01305at 283.472 kb on + strand, within AO353_01305at 283.472 kb on + strand, within AO353_01305at 283.601 kb on + strand, within AO353_01305at 283.601 kb on + strand, within AO353_01305at 283.601 kb on + strand, within AO353_01305at 283.602 kb on - strand, within AO353_01305at 283.602 kb on - strand, within AO353_01305at 283.602 kb on - strand, within AO353_01305at 283.602 kb on - strand, within AO353_01305at 283.602 kb on - strand, within AO353_01305at 283.610 kb on + strand, within AO353_01305at 283.611 kb on - strand, within AO353_01305at 283.611 kb on - strand, within AO353_01305at 283.611 kb on - strand, within AO353_01305at 283.611 kb on - strand, within AO353_01305at 283.611 kb on - strand, within AO353_01305at 283.691 kb on + strand, within AO353_01305at 283.692 kb on - strand, within AO353_01305at 283.692 kb on - strand, within AO353_01305at 283.692 kb on - strand, within AO353_01305at 283.781 kb on + strand, within AO353_01305at 283.781 kb on + strand, within AO353_01305at 283.781 kb on + strand, within AO353_01305at 283.781 kb on + strand, within AO353_01305at 283.781 kb on + strand, within AO353_01305at 283.781 kb on + strand, within AO353_01305at 283.781 kb on + strand, within AO353_01305at 283.781 kb on + strand, within AO353_01305at 283.781 kb on + strand, within AO353_01305at 283.782 kb on - strand, within AO353_01305at 283.782 kb on - strand, within AO353_01305at 283.782 kb on - strand, within AO353_01305at 283.782 kb on - strand, within AO353_01305at 283.782 kb on - strand, within AO353_01305at 283.782 kb on - strand, within AO353_01305at 283.782 kb on - strand, within AO353_01305at 283.785 kb on + strand, within AO353_01305at 283.785 kb on + strand, within AO353_01305at 283.785 kb on + strand, within AO353_01305at 283.785 kb on + strand, within AO353_01305at 283.785 kb on + strand, within AO353_01305at 283.786 kb on - strand, within AO353_01305at 283.786 kb on - strand, within AO353_01305at 283.812 kb on + strand, within AO353_01305at 283.813 kb on - strand, within AO353_01305at 283.813 kb on - strand, within AO353_01305at 283.813 kb on - strand, within AO353_01305at 283.950 kb on + strandat 283.951 kb on - strandat 283.951 kb on - strandat 284.105 kb on + strandat 284.105 kb on + strandat 284.105 kb on + strandat 284.105 kb on + strandat 284.105 kb on + strandat 284.106 kb on - strandat 284.106 kb on - strandat 284.106 kb on - strandat 284.106 kb on - strandat 284.115 kb on - strandat 284.136 kb on + strandat 284.194 kb on + strandat 284.195 kb on - strandat 284.195 kb on - strandat 284.333 kb on - strand, within AO353_01310at 284.333 kb on - strand, within AO353_01310at 284.333 kb on - strand, within AO353_01310at 284.333 kb on - strand, within AO353_01310at 284.333 kb on - strand, within AO353_01310at 284.333 kb on - strand, within AO353_01310at 284.333 kb on - strand, within AO353_01310at 284.333 kb on - strand, within AO353_01310at 284.506 kb on + strand, within AO353_01310at 284.507 kb on - strand, within AO353_01310at 284.512 kb on + strand, within AO353_01310at 284.512 kb on + strand, within AO353_01310at 284.644 kb on + strand, within AO353_01310at 284.645 kb on - strand, within AO353_01310at 284.645 kb on - strand, within AO353_01310

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Per-strain Table

Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay
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282,431 + AO353_01295 0.67 -2.2
282,431 + AO353_01295 0.67 -1.9
282,431 + AO353_01295 0.67 -3.0
282,431 + AO353_01295 0.67 +2.6
282,431 + AO353_01295 0.67 +3.8
282,431 + AO353_01295 0.67 +2.9
282,431 + AO353_01295 0.67 -1.2
282,432 - AO353_01295 0.67 +1.8
282,432 - AO353_01295 0.67 -1.2
282,432 - AO353_01295 0.67 -2.1
282,434 + AO353_01295 0.67 +0.3
282,434 + AO353_01295 0.67 +2.9
282,434 + AO353_01295 0.67 -0.1
282,434 + AO353_01295 0.67 -0.1
282,434 + AO353_01295 0.67 -0.1
282,434 + AO353_01295 0.67 -0.5
282,434 + AO353_01295 0.67 -1.1
282,434 + AO353_01295 0.67 +1.4
282,434 + AO353_01295 0.67 -0.7
282,434 + AO353_01295 0.67 +0.0
282,434 + AO353_01295 0.67 +1.7
282,434 + AO353_01295 0.67 -1.5
282,434 + AO353_01295 0.67 +0.7
282,434 + AO353_01295 0.67 -1.3
282,434 + AO353_01295 0.67 -1.3
282,435 - AO353_01295 0.67 +0.1
282,435 - AO353_01295 0.67 -1.3
282,435 - AO353_01295 0.67 +0.7
282,435 - AO353_01295 0.67 -1.1
282,435 - AO353_01295 0.67 +1.2
282,435 - AO353_01295 0.67 -1.9
282,437 + AO353_01295 0.68 +0.4
282,437 + AO353_01295 0.68 +1.5
282,437 + AO353_01295 0.68 +1.2
282,437 + AO353_01295 0.68 -0.9
282,437 + AO353_01295 0.68 -0.9
282,437 + AO353_01295 0.68 -2.0
282,437 + AO353_01295 0.68 +0.1
282,437 + AO353_01295 0.68 -0.6
282,437 + AO353_01295 0.68 +0.9
282,438 - AO353_01295 0.68 -0.5
282,522 + AO353_01295 0.77 -1.7
282,523 - AO353_01295 0.78 -0.5
282,528 - AO353_01295 0.78 -2.6
282,528 - AO353_01295 0.78 -0.4
282,529 + AO353_01295 0.78 +2.2
282,529 + AO353_01295 0.78 -1.5
282,567 - AO353_01295 0.83 -0.1
282,677 + -1.9
282,677 + -0.9
282,677 + +1.7
282,677 + -0.8
282,678 - -2.6
282,716 + -2.0
282,716 + -1.3
282,717 - +1.7
282,717 - -1.4
282,717 - -0.2
282,717 - -0.1
282,717 - -0.1
282,717 - -1.9
282,717 - -0.9
282,765 + -2.0
282,864 + AO353_01300 0.18 -1.0
282,864 + AO353_01300 0.18 +0.2
282,864 + AO353_01300 0.18 +1.8
282,864 + AO353_01300 0.18 +0.8
282,864 + AO353_01300 0.18 +0.7
282,864 + AO353_01300 0.18 +1.0
282,865 - AO353_01300 0.18 -0.4
282,865 - AO353_01300 0.18 -1.5
282,865 - AO353_01300 0.18 +0.3
282,865 - AO353_01300 0.18 -2.0
282,865 - AO353_01300 0.18 +0.9
282,905 + AO353_01300 0.25 -0.2
282,905 + AO353_01300 0.25 +0.4
282,905 + AO353_01300 0.25 -0.5
282,905 + AO353_01300 0.25 +1.7
282,905 + AO353_01300 0.25 -0.5
282,905 + AO353_01300 0.25 -1.9
282,905 + AO353_01300 0.25 +0.1
282,905 + AO353_01300 0.25 -0.9
282,905 + AO353_01300 0.25 +0.7
282,905 + AO353_01300 0.25 +1.0
282,905 + AO353_01300 0.25 -0.5
282,905 + AO353_01300 0.25 -1.5
282,905 + AO353_01300 0.25 -0.7
282,906 - AO353_01300 0.25 -0.3
282,906 - AO353_01300 0.25 -0.8
282,906 - AO353_01300 0.25 -2.3
282,906 - AO353_01300 0.25 +1.4
282,906 - AO353_01300 0.25 -0.7
282,915 + AO353_01300 0.27 +1.1
282,915 + AO353_01300 0.27 +1.9
282,915 + AO353_01300 0.27 -2.1
282,915 + AO353_01300 0.27 -1.3
282,915 + AO353_01300 0.27 -0.7
282,916 - AO353_01300 0.27 +0.9
282,916 - AO353_01300 0.27 +1.9
283,102 + AO353_01300 0.60 -1.0
283,102 + AO353_01300 0.60 -1.7
283,103 - AO353_01300 0.60 +1.2
283,113 + AO353_01300 0.62 -2.2
283,113 + AO353_01300 0.62 -1.3
283,113 + AO353_01300 0.62 -0.7
283,113 + AO353_01300 0.62 -1.0
283,113 + AO353_01300 0.62 -0.3
283,113 + AO353_01300 0.62 +0.3
283,113 + AO353_01300 0.62 +0.9
283,114 - AO353_01300 0.62 -0.5
283,114 - AO353_01300 0.62 +0.5
283,114 - AO353_01300 0.62 -3.1
283,114 - AO353_01300 0.62 -0.6
283,114 - AO353_01300 0.62 +2.5
283,114 - AO353_01300 0.62 -2.9
283,114 - AO353_01300 0.62 +1.4
283,114 - AO353_01300 0.62 -2.6
283,188 + AO353_01300 0.76 -0.4
283,188 + AO353_01300 0.76 -1.1
283,188 + AO353_01300 0.76 +1.3
283,189 - AO353_01300 0.76 -1.9
283,189 - AO353_01300 0.76 -1.0
283,189 - +0.3
283,191 + AO353_01300 0.76 -2.0
283,191 + AO353_01300 0.76 +0.5
283,191 + AO353_01300 0.76 -1.6
283,192 - AO353_01300 0.76 +1.9
283,192 - AO353_01300 0.76 +0.5
283,303 + -0.1
283,303 + +1.7
283,303 + +1.6
283,303 + +0.9
283,304 - +0.1
283,304 - +2.0
283,304 - +1.7
283,344 - -1.5
283,344 - +1.4
283,376 + -3.2
283,376 + -2.1
283,377 - -1.2
283,432 + AO353_01305 0.15 -1.0
283,472 + AO353_01305 0.21 -2.2
283,472 + AO353_01305 0.21 -0.0
283,601 + AO353_01305 0.43 +0.1
283,601 + AO353_01305 0.43 -2.5
283,601 + AO353_01305 0.43 -1.5
283,602 - AO353_01305 0.43 -1.5
283,602 - AO353_01305 0.43 -0.8
283,602 - AO353_01305 0.43 -0.9
283,602 - AO353_01305 0.43 -1.7
283,602 - AO353_01305 0.43 -1.1
283,610 + AO353_01305 0.44 -0.8
283,611 - AO353_01305 0.44 -0.3
283,611 - AO353_01305 0.44 -0.3
283,611 - AO353_01305 0.44 -3.2
283,611 - AO353_01305 0.44 -0.7
283,611 - AO353_01305 0.44 -1.3
283,691 + AO353_01305 0.58 -0.8
283,692 - AO353_01305 0.58 -2.3
283,692 - AO353_01305 0.58 +0.3
283,692 - AO353_01305 0.58 -1.5
283,781 + AO353_01305 0.72 -1.7
283,781 + AO353_01305 0.72 -0.3
283,781 + AO353_01305 0.72 -0.7
283,781 + AO353_01305 0.72 -1.5
283,781 + AO353_01305 0.72 -0.6
283,781 + AO353_01305 0.72 -0.8
283,781 + AO353_01305 0.72 +0.1
283,781 + AO353_01305 0.72 -1.8
283,781 + AO353_01305 0.72 -1.0
283,782 - AO353_01305 0.73 -1.1
283,782 - AO353_01305 0.73 -0.6
283,782 - AO353_01305 0.73 -0.5
283,782 - AO353_01305 0.73 -0.5
283,782 - AO353_01305 0.73 +0.7
283,782 - AO353_01305 0.73 -1.5
283,782 - AO353_01305 0.73 -1.1
283,785 + AO353_01305 0.73 -2.9
283,785 + AO353_01305 0.73 -1.7
283,785 + AO353_01305 0.73 -0.8
283,785 + AO353_01305 0.73 -2.0
283,785 + AO353_01305 0.73 -2.5
283,786 - AO353_01305 0.73 -0.7
283,786 - AO353_01305 0.73 -1.1
283,812 + AO353_01305 0.78 -1.7
283,813 - AO353_01305 0.78 -1.2
283,813 - AO353_01305 0.78 -2.3
283,813 - AO353_01305 0.78 -3.7
283,950 + -0.7
283,951 - +1.1
283,951 - +2.7
284,105 + +1.3
284,105 + -0.7
284,105 + +3.6
284,105 + -2.2
284,105 + -2.4
284,106 - +1.3
284,106 - -0.7
284,106 - +2.5
284,106 - +0.8
284,115 - +1.0
284,136 + -0.0
284,194 + -0.1
284,195 - -2.1
284,195 - +0.7
284,333 - AO353_01310 0.14 -0.8
284,333 - AO353_01310 0.14 +0.8
284,333 - AO353_01310 0.14 -0.5
284,333 - AO353_01310 0.14 -0.0
284,333 - AO353_01310 0.14 +0.2
284,333 - AO353_01310 0.14 +0.9
284,333 - AO353_01310 0.14 -0.3
284,333 - AO353_01310 0.14 -2.1
284,506 + AO353_01310 0.32 +0.7
284,507 - AO353_01310 0.32 +2.8
284,512 + AO353_01310 0.33 +0.0
284,512 + AO353_01310 0.33 -0.2
284,644 + AO353_01310 0.46 -0.3
284,645 - AO353_01310 0.46 +0.5
284,645 - AO353_01310 0.46 +1.6

Or see this region's nucleotide sequence