Experiment: outer cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_00685 and AO353_00690 are separated by 146 nucleotides AO353_00690 and AO353_00695 are separated by 3 nucleotides
AO353_00685: AO353_00685 - DNA polymerase III subunit gamma/tau, at 144,325 to 146,433
_00685
AO353_00690: AO353_00690 - amino acid ABC transporter substrate-binding protein, at 146,580 to 147,338
_00690
AO353_00695: AO353_00695 - diguanylate cyclase, at 147,342 to 149,042
_00695
Position (kb) 146
147
148 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 146.512 kb on + strand at 146.521 kb on + strand at 146.529 kb on + strand at 146.530 kb on - strand at 146.579 kb on + strand at 146.721 kb on + strand, within AO353_00690 at 146.721 kb on + strand, within AO353_00690 at 146.721 kb on + strand, within AO353_00690 at 146.836 kb on - strand, within AO353_00690 at 146.874 kb on + strand, within AO353_00690 at 146.874 kb on + strand, within AO353_00690 at 146.874 kb on + strand, within AO353_00690 at 146.875 kb on - strand, within AO353_00690 at 146.875 kb on - strand, within AO353_00690 at 146.984 kb on - strand, within AO353_00690 at 147.092 kb on + strand, within AO353_00690 at 147.100 kb on - strand, within AO353_00690 at 147.204 kb on + strand, within AO353_00690 at 147.204 kb on + strand, within AO353_00690 at 147.204 kb on + strand, within AO353_00690 at 147.204 kb on + strand, within AO353_00690 at 147.205 kb on - strand, within AO353_00690 at 147.205 kb on - strand, within AO353_00690 at 147.212 kb on + strand, within AO353_00690 at 147.301 kb on - strand at 147.301 kb on - strand at 147.337 kb on - strand at 147.337 kb on - strand at 147.439 kb on + strand at 147.439 kb on + strand at 147.440 kb on - strand at 147.451 kb on - strand at 147.585 kb on + strand, within AO353_00695 at 147.585 kb on + strand, within AO353_00695 at 147.585 kb on + strand, within AO353_00695 at 147.585 kb on + strand, within AO353_00695 at 147.585 kb on + strand, within AO353_00695 at 147.585 kb on + strand, within AO353_00695 at 147.585 kb on + strand, within AO353_00695 at 147.585 kb on + strand, within AO353_00695 at 147.586 kb on - strand, within AO353_00695 at 147.586 kb on - strand, within AO353_00695 at 147.586 kb on - strand, within AO353_00695 at 147.586 kb on - strand, within AO353_00695 at 147.605 kb on + strand, within AO353_00695 at 147.606 kb on - strand, within AO353_00695 at 147.644 kb on - strand, within AO353_00695 at 147.737 kb on + strand, within AO353_00695 at 147.738 kb on - strand, within AO353_00695 at 147.738 kb on - strand, within AO353_00695 at 147.738 kb on - strand, within AO353_00695 at 147.738 kb on - strand, within AO353_00695 at 148.216 kb on + strand, within AO353_00695 at 148.216 kb on + strand, within AO353_00695 at 148.216 kb on + strand, within AO353_00695 at 148.216 kb on + strand, within AO353_00695 at 148.216 kb on + strand, within AO353_00695 at 148.216 kb on + strand, within AO353_00695 at 148.216 kb on + strand, within AO353_00695 at 148.216 kb on + strand, within AO353_00695 at 148.216 kb on + strand, within AO353_00695 at 148.216 kb on + strand, within AO353_00695 at 148.216 kb on + strand, within AO353_00695 at 148.217 kb on - strand, within AO353_00695 at 148.217 kb on - strand, within AO353_00695 at 148.217 kb on - strand, within AO353_00695 at 148.217 kb on - strand, within AO353_00695 at 148.217 kb on - strand, within AO353_00695 at 148.217 kb on - strand, within AO353_00695 at 148.217 kb on - strand, within AO353_00695 at 148.328 kb on - strand, within AO353_00695
Per-strain Table
Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay remove 146,512 + +1.1 146,521 + -2.1 146,529 + -0.8 146,530 - +2.6 146,579 + +1.2 146,721 + AO353_00690 0.19 -2.6 146,721 + AO353_00690 0.19 -1.3 146,721 + AO353_00690 0.19 -1.2 146,836 - AO353_00690 0.34 -1.4 146,874 + AO353_00690 0.39 +0.0 146,874 + AO353_00690 0.39 +0.7 146,874 + AO353_00690 0.39 -0.8 146,875 - AO353_00690 0.39 +0.0 146,875 - AO353_00690 0.39 +0.0 146,984 - AO353_00690 0.53 +1.9 147,092 + AO353_00690 0.67 +2.5 147,100 - AO353_00690 0.69 +0.8 147,204 + AO353_00690 0.82 +0.7 147,204 + AO353_00690 0.82 +5.2 147,204 + AO353_00690 0.82 -0.3 147,204 + AO353_00690 0.82 -1.8 147,205 - AO353_00690 0.82 +0.1 147,205 - AO353_00690 0.82 +2.6 147,212 + AO353_00690 0.83 -1.0 147,301 - +0.6 147,301 - +1.9 147,337 - -1.0 147,337 - -1.1 147,439 + +2.6 147,439 + -1.1 147,440 - -0.6 147,451 - +2.1 147,585 + AO353_00695 0.14 +0.0 147,585 + AO353_00695 0.14 -0.3 147,585 + AO353_00695 0.14 +0.9 147,585 + AO353_00695 0.14 +1.1 147,585 + AO353_00695 0.14 +0.1 147,585 + AO353_00695 0.14 +2.2 147,585 + AO353_00695 0.14 +0.3 147,585 + AO353_00695 0.14 +0.5 147,586 - AO353_00695 0.14 +0.0 147,586 - AO353_00695 0.14 -0.9 147,586 - AO353_00695 0.14 -2.1 147,586 - AO353_00695 0.14 -0.4 147,605 + AO353_00695 0.15 +0.2 147,606 - AO353_00695 0.16 -1.1 147,644 - AO353_00695 0.18 +1.9 147,737 + AO353_00695 0.23 +1.0 147,738 - AO353_00695 0.23 +0.7 147,738 - AO353_00695 0.23 +0.3 147,738 - AO353_00695 0.23 -1.3 147,738 - AO353_00695 0.23 +2.5 148,216 + AO353_00695 0.51 -0.1 148,216 + AO353_00695 0.51 +1.3 148,216 + AO353_00695 0.51 +1.5 148,216 + AO353_00695 0.51 +1.9 148,216 + AO353_00695 0.51 +2.2 148,216 + AO353_00695 0.51 +2.5 148,216 + AO353_00695 0.51 -1.2 148,216 + AO353_00695 0.51 +2.4 148,216 + AO353_00695 0.51 +2.8 148,216 + AO353_00695 0.51 +3.9 148,216 + AO353_00695 0.51 -1.2 148,217 - AO353_00695 0.51 +2.2 148,217 - AO353_00695 0.51 +1.9 148,217 - AO353_00695 0.51 +1.9 148,217 - AO353_00695 0.51 +3.1 148,217 - AO353_00695 0.51 +0.6 148,217 - AO353_00695 0.51 +3.4 148,217 - AO353_00695 0.51 +3.2 148,328 - AO353_00695 0.58 +3.3
Or see this region's nucleotide sequence