Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5169

Experiment: Cadmium chloride hemipentahydrate 0.00005 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5167 and Pf6N2E2_5168 are separated by 223 nucleotidesPf6N2E2_5168 and Pf6N2E2_5169 are separated by 233 nucleotidesPf6N2E2_5169 and Pf6N2E2_5170 are separated by 87 nucleotides Pf6N2E2_5167 - Lipoprotein, putative, at 5,955,365 to 5,956,219 _5167 Pf6N2E2_5168 - Regulator of competence-specific genes, at 5,956,443 to 5,956,715 _5168 Pf6N2E2_5169 - FIG00954216: hypothetical protein, at 5,956,949 to 5,957,290 _5169 Pf6N2E2_5170 - FIG00955330: hypothetical protein, at 5,957,378 to 5,958,934 _5170 Position (kb) 5956 5957 5958Strain fitness (log2 ratio) -2 -1 0 1 2at 5956.149 kb on - strandat 5956.149 kb on - strandat 5956.149 kb on - strandat 5956.158 kb on - strandat 5956.184 kb on + strandat 5956.185 kb on - strandat 5956.225 kb on + strandat 5956.225 kb on + strandat 5956.226 kb on - strandat 5956.272 kb on + strandat 5956.288 kb on + strandat 5956.288 kb on + strandat 5956.288 kb on + strandat 5956.289 kb on - strandat 5956.289 kb on - strandat 5956.387 kb on + strandat 5956.451 kb on + strandat 5956.452 kb on - strandat 5956.452 kb on - strandat 5956.452 kb on - strandat 5956.452 kb on - strandat 5956.452 kb on - strandat 5956.481 kb on + strand, within Pf6N2E2_5168at 5956.482 kb on - strand, within Pf6N2E2_5168at 5956.552 kb on + strand, within Pf6N2E2_5168at 5956.552 kb on + strand, within Pf6N2E2_5168at 5956.552 kb on + strand, within Pf6N2E2_5168at 5956.553 kb on - strand, within Pf6N2E2_5168at 5956.553 kb on - strand, within Pf6N2E2_5168at 5956.627 kb on - strand, within Pf6N2E2_5168at 5956.769 kb on + strandat 5956.770 kb on - strandat 5956.780 kb on - strandat 5956.780 kb on - strandat 5956.823 kb on + strandat 5956.823 kb on + strandat 5956.823 kb on + strandat 5956.823 kb on + strandat 5956.823 kb on + strandat 5956.824 kb on - strandat 5956.824 kb on - strandat 5956.824 kb on - strandat 5956.863 kb on + strandat 5956.863 kb on + strandat 5956.864 kb on - strandat 5956.864 kb on - strandat 5956.963 kb on - strandat 5957.028 kb on + strand, within Pf6N2E2_5169at 5957.028 kb on + strand, within Pf6N2E2_5169at 5957.029 kb on - strand, within Pf6N2E2_5169at 5957.029 kb on - strand, within Pf6N2E2_5169at 5957.029 kb on - strand, within Pf6N2E2_5169at 5957.029 kb on - strand, within Pf6N2E2_5169at 5957.029 kb on - strand, within Pf6N2E2_5169at 5957.119 kb on - strand, within Pf6N2E2_5169at 5957.256 kb on + strandat 5957.256 kb on + strandat 5957.257 kb on - strandat 5957.257 kb on - strandat 5957.295 kb on + strandat 5957.375 kb on + strandat 5957.375 kb on + strandat 5957.376 kb on - strandat 5957.376 kb on - strandat 5957.379 kb on + strandat 5957.379 kb on + strandat 5957.379 kb on + strandat 5957.379 kb on + strandat 5957.379 kb on + strandat 5957.673 kb on + strand, within Pf6N2E2_5170at 5957.673 kb on + strand, within Pf6N2E2_5170at 5957.673 kb on + strand, within Pf6N2E2_5170at 5957.673 kb on + strand, within Pf6N2E2_5170at 5957.673 kb on + strand, within Pf6N2E2_5170at 5957.673 kb on + strand, within Pf6N2E2_5170at 5957.673 kb on + strand, within Pf6N2E2_5170at 5957.674 kb on - strand, within Pf6N2E2_5170at 5957.674 kb on - strand, within Pf6N2E2_5170at 5957.674 kb on - strand, within Pf6N2E2_5170at 5957.742 kb on + strand, within Pf6N2E2_5170at 5957.743 kb on - strand, within Pf6N2E2_5170at 5957.743 kb on - strand, within Pf6N2E2_5170at 5957.743 kb on - strand, within Pf6N2E2_5170at 5957.767 kb on + strand, within Pf6N2E2_5170at 5957.767 kb on + strand, within Pf6N2E2_5170at 5957.767 kb on + strand, within Pf6N2E2_5170at 5957.767 kb on + strand, within Pf6N2E2_5170at 5957.768 kb on - strand, within Pf6N2E2_5170at 5957.769 kb on + strand, within Pf6N2E2_5170at 5957.769 kb on + strand, within Pf6N2E2_5170at 5957.769 kb on + strand, within Pf6N2E2_5170at 5957.770 kb on - strand, within Pf6N2E2_5170at 5957.770 kb on - strand, within Pf6N2E2_5170at 5957.864 kb on + strand, within Pf6N2E2_5170at 5957.864 kb on + strand, within Pf6N2E2_5170at 5957.946 kb on + strand, within Pf6N2E2_5170at 5957.946 kb on + strand, within Pf6N2E2_5170at 5957.967 kb on + strand, within Pf6N2E2_5170at 5957.967 kb on + strand, within Pf6N2E2_5170at 5957.967 kb on + strand, within Pf6N2E2_5170at 5957.968 kb on - strand, within Pf6N2E2_5170at 5958.063 kb on + strand, within Pf6N2E2_5170at 5958.063 kb on + strand, within Pf6N2E2_5170at 5958.063 kb on + strand, within Pf6N2E2_5170at 5958.064 kb on - strand, within Pf6N2E2_5170at 5958.064 kb on - strand, within Pf6N2E2_5170at 5958.071 kb on - strand, within Pf6N2E2_5170at 5958.071 kb on - strand, within Pf6N2E2_5170at 5958.071 kb on - strand, within Pf6N2E2_5170at 5958.072 kb on + strand, within Pf6N2E2_5170at 5958.072 kb on + strand, within Pf6N2E2_5170at 5958.072 kb on + strand, within Pf6N2E2_5170at 5958.072 kb on + strand, within Pf6N2E2_5170at 5958.072 kb on + strand, within Pf6N2E2_5170at 5958.073 kb on - strand, within Pf6N2E2_5170at 5958.073 kb on - strand, within Pf6N2E2_5170at 5958.073 kb on - strandat 5958.073 kb on - strand, within Pf6N2E2_5170at 5958.099 kb on + strand, within Pf6N2E2_5170at 5958.099 kb on + strand, within Pf6N2E2_5170at 5958.120 kb on + strand, within Pf6N2E2_5170at 5958.120 kb on + strand, within Pf6N2E2_5170at 5958.121 kb on - strand, within Pf6N2E2_5170at 5958.198 kb on + strand, within Pf6N2E2_5170at 5958.198 kb on + strand, within Pf6N2E2_5170at 5958.198 kb on + strand, within Pf6N2E2_5170at 5958.199 kb on - strand, within Pf6N2E2_5170

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium chloride hemipentahydrate 0.00005 M
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5,956,149 - +0.1
5,956,149 - +0.4
5,956,149 - -0.3
5,956,158 - +0.4
5,956,184 + +0.1
5,956,185 - +0.1
5,956,225 + -0.4
5,956,225 + -0.8
5,956,226 - +1.5
5,956,272 + -0.1
5,956,288 + +1.1
5,956,288 + -0.7
5,956,288 + -0.8
5,956,289 - -0.5
5,956,289 - +0.4
5,956,387 + -0.1
5,956,451 + -1.1
5,956,452 - -0.4
5,956,452 - -0.1
5,956,452 - +0.7
5,956,452 - +0.4
5,956,452 - +0.7
5,956,481 + Pf6N2E2_5168 0.14 +1.9
5,956,482 - Pf6N2E2_5168 0.14 -0.8
5,956,552 + Pf6N2E2_5168 0.40 +0.0
5,956,552 + Pf6N2E2_5168 0.40 +1.0
5,956,552 + Pf6N2E2_5168 0.40 -0.4
5,956,553 - Pf6N2E2_5168 0.40 +0.6
5,956,553 - Pf6N2E2_5168 0.40 -0.7
5,956,627 - Pf6N2E2_5168 0.67 +0.0
5,956,769 + -0.4
5,956,770 - -0.4
5,956,780 - -0.8
5,956,780 - -0.8
5,956,823 + +1.1
5,956,823 + +0.5
5,956,823 + +0.4
5,956,823 + +1.2
5,956,823 + -0.3
5,956,824 - -0.0
5,956,824 - +1.4
5,956,824 - -0.3
5,956,863 + +0.4
5,956,863 + +1.2
5,956,864 - +0.1
5,956,864 - -1.6
5,956,963 - +0.3
5,957,028 + Pf6N2E2_5169 0.23 -0.8
5,957,028 + Pf6N2E2_5169 0.23 -0.1
5,957,029 - Pf6N2E2_5169 0.23 -1.8
5,957,029 - Pf6N2E2_5169 0.23 -1.2
5,957,029 - Pf6N2E2_5169 0.23 -1.8
5,957,029 - Pf6N2E2_5169 0.23 -0.2
5,957,029 - Pf6N2E2_5169 0.23 +0.6
5,957,119 - Pf6N2E2_5169 0.50 -1.4
5,957,256 + +1.2
5,957,256 + -0.8
5,957,257 - +0.6
5,957,257 - -0.4
5,957,295 + -0.1
5,957,375 + -0.2
5,957,375 + +0.3
5,957,376 - -0.4
5,957,376 - -0.6
5,957,379 + -0.2
5,957,379 + -0.1
5,957,379 + -1.0
5,957,379 + -1.1
5,957,379 + +0.0
5,957,673 + Pf6N2E2_5170 0.19 -0.2
5,957,673 + Pf6N2E2_5170 0.19 +1.5
5,957,673 + Pf6N2E2_5170 0.19 +0.2
5,957,673 + Pf6N2E2_5170 0.19 +0.7
5,957,673 + Pf6N2E2_5170 0.19 +1.5
5,957,673 + Pf6N2E2_5170 0.19 +2.2
5,957,673 + Pf6N2E2_5170 0.19 -0.7
5,957,674 - Pf6N2E2_5170 0.19 -0.5
5,957,674 - Pf6N2E2_5170 0.19 +0.1
5,957,674 - Pf6N2E2_5170 0.19 -0.1
5,957,742 + Pf6N2E2_5170 0.23 +0.4
5,957,743 - Pf6N2E2_5170 0.23 -1.4
5,957,743 - Pf6N2E2_5170 0.23 +0.2
5,957,743 - Pf6N2E2_5170 0.23 +0.4
5,957,767 + Pf6N2E2_5170 0.25 +0.3
5,957,767 + Pf6N2E2_5170 0.25 -0.1
5,957,767 + Pf6N2E2_5170 0.25 -0.2
5,957,767 + Pf6N2E2_5170 0.25 -0.2
5,957,768 - Pf6N2E2_5170 0.25 +1.2
5,957,769 + Pf6N2E2_5170 0.25 +0.7
5,957,769 + Pf6N2E2_5170 0.25 +0.4
5,957,769 + Pf6N2E2_5170 0.25 +0.6
5,957,770 - Pf6N2E2_5170 0.25 -0.4
5,957,770 - Pf6N2E2_5170 0.25 +0.6
5,957,864 + Pf6N2E2_5170 0.31 +0.6
5,957,864 + Pf6N2E2_5170 0.31 +0.2
5,957,946 + Pf6N2E2_5170 0.36 -0.7
5,957,946 + Pf6N2E2_5170 0.36 -0.3
5,957,967 + Pf6N2E2_5170 0.38 -0.2
5,957,967 + Pf6N2E2_5170 0.38 +0.4
5,957,967 + Pf6N2E2_5170 0.38 -1.4
5,957,968 - Pf6N2E2_5170 0.38 -1.1
5,958,063 + Pf6N2E2_5170 0.44 +0.3
5,958,063 + Pf6N2E2_5170 0.44 -0.6
5,958,063 + Pf6N2E2_5170 0.44 +0.6
5,958,064 - Pf6N2E2_5170 0.44 +1.2
5,958,064 - Pf6N2E2_5170 0.44 -0.2
5,958,071 - Pf6N2E2_5170 0.45 +0.9
5,958,071 - Pf6N2E2_5170 0.45 +0.0
5,958,071 - Pf6N2E2_5170 0.45 +1.0
5,958,072 + Pf6N2E2_5170 0.45 +0.2
5,958,072 + Pf6N2E2_5170 0.45 +1.9
5,958,072 + Pf6N2E2_5170 0.45 +0.0
5,958,072 + Pf6N2E2_5170 0.45 +1.4
5,958,072 + Pf6N2E2_5170 0.45 +0.1
5,958,073 - Pf6N2E2_5170 0.45 +0.8
5,958,073 - Pf6N2E2_5170 0.45 -1.0
5,958,073 - -0.6
5,958,073 - Pf6N2E2_5170 0.45 -0.2
5,958,099 + Pf6N2E2_5170 0.46 +0.5
5,958,099 + Pf6N2E2_5170 0.46 +1.1
5,958,120 + Pf6N2E2_5170 0.48 +0.7
5,958,120 + Pf6N2E2_5170 0.48 +1.2
5,958,121 - Pf6N2E2_5170 0.48 -0.5
5,958,198 + Pf6N2E2_5170 0.53 -0.4
5,958,198 + Pf6N2E2_5170 0.53 -0.2
5,958,198 + Pf6N2E2_5170 0.53 +0.9
5,958,199 - Pf6N2E2_5170 0.53 -1.1

Or see this region's nucleotide sequence