Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4745

Experiment: Cadmium chloride hemipentahydrate 0.00005 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4744 and Pf6N2E2_4745 are separated by 66 nucleotidesPf6N2E2_4745 and Pf6N2E2_4746 are separated by 4 nucleotides Pf6N2E2_4744 - putative iron-regulated membrane protein, at 5,479,640 to 5,480,770 _4744 Pf6N2E2_4745 - hypothetical protein, at 5,480,837 to 5,480,995 _4745 Pf6N2E2_4746 - Ferrichrome-iron receptor @ Ferric siderophore receptor, TonB dependent, at 5,481,000 to 5,483,426 _4746 Position (kb) 5480 5481Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5480.271 kb on + strand, within Pf6N2E2_4744at 5480.272 kb on - strand, within Pf6N2E2_4744at 5480.272 kb on - strand, within Pf6N2E2_4744at 5480.272 kb on - strand, within Pf6N2E2_4744at 5480.449 kb on + strand, within Pf6N2E2_4744at 5480.449 kb on + strand, within Pf6N2E2_4744at 5480.450 kb on - strand, within Pf6N2E2_4744at 5480.710 kb on + strandat 5480.711 kb on - strandat 5480.812 kb on + strandat 5480.812 kb on + strandat 5480.812 kb on + strandat 5480.813 kb on - strandat 5480.813 kb on - strandat 5481.046 kb on + strandat 5481.046 kb on + strandat 5481.049 kb on + strandat 5481.049 kb on + strandat 5481.049 kb on + strandat 5481.050 kb on - strandat 5481.055 kb on + strandat 5481.055 kb on + strandat 5481.056 kb on - strandat 5481.056 kb on - strandat 5481.079 kb on + strandat 5481.079 kb on + strandat 5481.079 kb on + strandat 5481.080 kb on - strandat 5481.080 kb on - strandat 5481.080 kb on - strandat 5481.157 kb on + strandat 5481.157 kb on + strandat 5481.175 kb on + strandat 5481.176 kb on - strandat 5481.176 kb on - strandat 5481.176 kb on - strandat 5481.176 kb on - strandat 5481.182 kb on + strandat 5481.182 kb on + strandat 5481.184 kb on + strandat 5481.184 kb on + strandat 5481.184 kb on + strandat 5481.184 kb on + strandat 5481.184 kb on + strandat 5481.184 kb on + strandat 5481.184 kb on + strandat 5481.184 kb on + strandat 5481.184 kb on + strandat 5481.184 kb on + strandat 5481.185 kb on - strandat 5481.185 kb on - strandat 5481.185 kb on - strandat 5481.185 kb on - strandat 5481.185 kb on - strandat 5481.226 kb on + strandat 5481.226 kb on + strandat 5481.226 kb on + strandat 5481.226 kb on + strandat 5481.227 kb on - strandat 5481.227 kb on - strandat 5481.227 kb on - strandat 5481.227 kb on - strandat 5481.241 kb on + strandat 5481.241 kb on + strandat 5481.241 kb on + strandat 5481.241 kb on + strandat 5481.242 kb on - strandat 5481.242 kb on - strandat 5481.242 kb on - strandat 5481.242 kb on - strandat 5481.242 kb on - strandat 5481.242 kb on - strandat 5481.242 kb on - strandat 5481.296 kb on - strand, within Pf6N2E2_4746at 5481.296 kb on - strand, within Pf6N2E2_4746at 5481.296 kb on - strand, within Pf6N2E2_4746at 5481.388 kb on + strand, within Pf6N2E2_4746at 5481.388 kb on + strand, within Pf6N2E2_4746at 5481.388 kb on + strand, within Pf6N2E2_4746at 5481.388 kb on + strand, within Pf6N2E2_4746at 5481.389 kb on - strand, within Pf6N2E2_4746at 5481.389 kb on - strand, within Pf6N2E2_4746at 5481.389 kb on - strand, within Pf6N2E2_4746at 5481.389 kb on - strand, within Pf6N2E2_4746at 5481.394 kb on + strand, within Pf6N2E2_4746at 5481.394 kb on + strand, within Pf6N2E2_4746at 5481.394 kb on + strand, within Pf6N2E2_4746at 5481.394 kb on + strand, within Pf6N2E2_4746at 5481.394 kb on + strand, within Pf6N2E2_4746at 5481.395 kb on - strand, within Pf6N2E2_4746at 5481.395 kb on - strand, within Pf6N2E2_4746at 5481.395 kb on - strand, within Pf6N2E2_4746at 5481.395 kb on - strand, within Pf6N2E2_4746at 5481.457 kb on - strand, within Pf6N2E2_4746at 5481.462 kb on + strand, within Pf6N2E2_4746at 5481.462 kb on + strand, within Pf6N2E2_4746at 5481.462 kb on + strand, within Pf6N2E2_4746at 5481.462 kb on + strand, within Pf6N2E2_4746at 5481.463 kb on - strand, within Pf6N2E2_4746at 5481.463 kb on - strand, within Pf6N2E2_4746at 5481.463 kb on - strand, within Pf6N2E2_4746at 5481.568 kb on + strand, within Pf6N2E2_4746at 5481.568 kb on + strand, within Pf6N2E2_4746at 5481.568 kb on + strand, within Pf6N2E2_4746at 5481.569 kb on - strand, within Pf6N2E2_4746at 5481.569 kb on - strand, within Pf6N2E2_4746at 5481.569 kb on - strand, within Pf6N2E2_4746at 5481.569 kb on - strand, within Pf6N2E2_4746at 5481.673 kb on + strand, within Pf6N2E2_4746at 5481.700 kb on + strand, within Pf6N2E2_4746at 5481.700 kb on + strand, within Pf6N2E2_4746at 5481.850 kb on + strand, within Pf6N2E2_4746at 5481.850 kb on + strand, within Pf6N2E2_4746at 5481.850 kb on + strand, within Pf6N2E2_4746at 5481.850 kb on + strand, within Pf6N2E2_4746at 5481.850 kb on + strand, within Pf6N2E2_4746at 5481.851 kb on - strand, within Pf6N2E2_4746at 5481.851 kb on - strand, within Pf6N2E2_4746at 5481.880 kb on + strand, within Pf6N2E2_4746at 5481.880 kb on + strand, within Pf6N2E2_4746at 5481.880 kb on + strand, within Pf6N2E2_4746at 5481.880 kb on + strand, within Pf6N2E2_4746at 5481.881 kb on - strand, within Pf6N2E2_4746at 5481.881 kb on - strand, within Pf6N2E2_4746at 5481.886 kb on + strand, within Pf6N2E2_4746at 5481.886 kb on + strand, within Pf6N2E2_4746at 5481.886 kb on + strand, within Pf6N2E2_4746at 5481.886 kb on + strand, within Pf6N2E2_4746at 5481.886 kb on + strand, within Pf6N2E2_4746at 5481.886 kb on + strand, within Pf6N2E2_4746at 5481.886 kb on + strand, within Pf6N2E2_4746at 5481.886 kb on + strand, within Pf6N2E2_4746at 5481.886 kb on + strand, within Pf6N2E2_4746at 5481.886 kb on + strand, within Pf6N2E2_4746at 5481.887 kb on - strand, within Pf6N2E2_4746at 5481.887 kb on - strand, within Pf6N2E2_4746at 5481.887 kb on - strand, within Pf6N2E2_4746at 5481.887 kb on - strand, within Pf6N2E2_4746at 5481.887 kb on - strand, within Pf6N2E2_4746at 5481.887 kb on - strand, within Pf6N2E2_4746at 5481.887 kb on - strand, within Pf6N2E2_4746at 5481.887 kb on - strand, within Pf6N2E2_4746at 5481.899 kb on - strand, within Pf6N2E2_4746at 5481.899 kb on - strand, within Pf6N2E2_4746at 5481.899 kb on - strand, within Pf6N2E2_4746at 5481.925 kb on + strand, within Pf6N2E2_4746at 5481.926 kb on - strand, within Pf6N2E2_4746at 5481.926 kb on - strand, within Pf6N2E2_4746

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium chloride hemipentahydrate 0.00005 M
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5,480,271 + Pf6N2E2_4744 0.56 -1.1
5,480,272 - Pf6N2E2_4744 0.56 -1.9
5,480,272 - Pf6N2E2_4744 0.56 +0.1
5,480,272 - Pf6N2E2_4744 0.56 +0.3
5,480,449 + Pf6N2E2_4744 0.72 -1.3
5,480,449 + Pf6N2E2_4744 0.72 +0.3
5,480,450 - Pf6N2E2_4744 0.72 -1.4
5,480,710 + +0.6
5,480,711 - -0.7
5,480,812 + -0.7
5,480,812 + +0.1
5,480,812 + -0.0
5,480,813 - +0.0
5,480,813 - -0.1
5,481,046 + +0.6
5,481,046 + +0.3
5,481,049 + -0.4
5,481,049 + -0.1
5,481,049 + -0.4
5,481,050 - +1.4
5,481,055 + -1.6
5,481,055 + +0.2
5,481,056 - -0.9
5,481,056 - -0.1
5,481,079 + +0.3
5,481,079 + -0.6
5,481,079 + +0.1
5,481,080 - +1.0
5,481,080 - +0.9
5,481,080 - +0.3
5,481,157 + -0.4
5,481,157 + +0.9
5,481,175 + +0.0
5,481,176 - -0.0
5,481,176 - +0.6
5,481,176 - +0.1
5,481,176 - -0.8
5,481,182 + +0.7
5,481,182 + +0.4
5,481,184 + +0.3
5,481,184 + -0.3
5,481,184 + +1.0
5,481,184 + -1.9
5,481,184 + -0.1
5,481,184 + -0.0
5,481,184 + +0.7
5,481,184 + +0.1
5,481,184 + +1.4
5,481,184 + +0.9
5,481,185 - +0.2
5,481,185 - -3.1
5,481,185 - -0.4
5,481,185 - +0.2
5,481,185 - +0.2
5,481,226 + +0.9
5,481,226 + -1.9
5,481,226 + -0.7
5,481,226 + +0.5
5,481,227 - +0.4
5,481,227 - +0.5
5,481,227 - -0.8
5,481,227 - +0.5
5,481,241 + -0.3
5,481,241 + +0.4
5,481,241 + -0.6
5,481,241 + -0.2
5,481,242 - -0.1
5,481,242 - +1.0
5,481,242 - +0.4
5,481,242 - +0.8
5,481,242 - -0.7
5,481,242 - +0.3
5,481,242 - +1.2
5,481,296 - Pf6N2E2_4746 0.12 +1.6
5,481,296 - Pf6N2E2_4746 0.12 -0.6
5,481,296 - Pf6N2E2_4746 0.12 +0.9
5,481,388 + Pf6N2E2_4746 0.16 -0.1
5,481,388 + Pf6N2E2_4746 0.16 -0.2
5,481,388 + Pf6N2E2_4746 0.16 -2.4
5,481,388 + Pf6N2E2_4746 0.16 +0.7
5,481,389 - Pf6N2E2_4746 0.16 -0.1
5,481,389 - Pf6N2E2_4746 0.16 -1.7
5,481,389 - Pf6N2E2_4746 0.16 -1.9
5,481,389 - Pf6N2E2_4746 0.16 -1.4
5,481,394 + Pf6N2E2_4746 0.16 -1.3
5,481,394 + Pf6N2E2_4746 0.16 +0.8
5,481,394 + Pf6N2E2_4746 0.16 -0.4
5,481,394 + Pf6N2E2_4746 0.16 -0.2
5,481,394 + Pf6N2E2_4746 0.16 -0.6
5,481,395 - Pf6N2E2_4746 0.16 -0.2
5,481,395 - Pf6N2E2_4746 0.16 +2.7
5,481,395 - Pf6N2E2_4746 0.16 +0.8
5,481,395 - Pf6N2E2_4746 0.16 +0.8
5,481,457 - Pf6N2E2_4746 0.19 +0.5
5,481,462 + Pf6N2E2_4746 0.19 +0.8
5,481,462 + Pf6N2E2_4746 0.19 -0.7
5,481,462 + Pf6N2E2_4746 0.19 +1.1
5,481,462 + Pf6N2E2_4746 0.19 -1.3
5,481,463 - Pf6N2E2_4746 0.19 +0.6
5,481,463 - Pf6N2E2_4746 0.19 -2.8
5,481,463 - Pf6N2E2_4746 0.19 +0.9
5,481,568 + Pf6N2E2_4746 0.23 -0.2
5,481,568 + Pf6N2E2_4746 0.23 -0.8
5,481,568 + Pf6N2E2_4746 0.23 +0.3
5,481,569 - Pf6N2E2_4746 0.23 +0.4
5,481,569 - Pf6N2E2_4746 0.23 -0.5
5,481,569 - Pf6N2E2_4746 0.23 -1.0
5,481,569 - Pf6N2E2_4746 0.23 -0.8
5,481,673 + Pf6N2E2_4746 0.28 +1.3
5,481,700 + Pf6N2E2_4746 0.29 +0.9
5,481,700 + Pf6N2E2_4746 0.29 +0.2
5,481,850 + Pf6N2E2_4746 0.35 -0.1
5,481,850 + Pf6N2E2_4746 0.35 +0.4
5,481,850 + Pf6N2E2_4746 0.35 -0.6
5,481,850 + Pf6N2E2_4746 0.35 -1.5
5,481,850 + Pf6N2E2_4746 0.35 -1.2
5,481,851 - Pf6N2E2_4746 0.35 +0.7
5,481,851 - Pf6N2E2_4746 0.35 -1.7
5,481,880 + Pf6N2E2_4746 0.36 +0.0
5,481,880 + Pf6N2E2_4746 0.36 +1.0
5,481,880 + Pf6N2E2_4746 0.36 -0.1
5,481,880 + Pf6N2E2_4746 0.36 +1.4
5,481,881 - Pf6N2E2_4746 0.36 +0.7
5,481,881 - Pf6N2E2_4746 0.36 -0.9
5,481,886 + Pf6N2E2_4746 0.37 +0.3
5,481,886 + Pf6N2E2_4746 0.37 +0.8
5,481,886 + Pf6N2E2_4746 0.37 +0.4
5,481,886 + Pf6N2E2_4746 0.37 +0.3
5,481,886 + Pf6N2E2_4746 0.37 -1.7
5,481,886 + Pf6N2E2_4746 0.37 -1.0
5,481,886 + Pf6N2E2_4746 0.37 -0.7
5,481,886 + Pf6N2E2_4746 0.37 +1.3
5,481,886 + Pf6N2E2_4746 0.37 +0.3
5,481,886 + Pf6N2E2_4746 0.37 +1.1
5,481,887 - Pf6N2E2_4746 0.37 +0.1
5,481,887 - Pf6N2E2_4746 0.37 -0.3
5,481,887 - Pf6N2E2_4746 0.37 +0.6
5,481,887 - Pf6N2E2_4746 0.37 +0.8
5,481,887 - Pf6N2E2_4746 0.37 +0.5
5,481,887 - Pf6N2E2_4746 0.37 -0.7
5,481,887 - Pf6N2E2_4746 0.37 -1.0
5,481,887 - Pf6N2E2_4746 0.37 +0.7
5,481,899 - Pf6N2E2_4746 0.37 -0.4
5,481,899 - Pf6N2E2_4746 0.37 +0.2
5,481,899 - Pf6N2E2_4746 0.37 -1.1
5,481,925 + Pf6N2E2_4746 0.38 +0.1
5,481,926 - Pf6N2E2_4746 0.38 +0.2
5,481,926 - Pf6N2E2_4746 0.38 -1.0

Or see this region's nucleotide sequence