Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3391

Experiment: Cadmium chloride hemipentahydrate 0.00005 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3390 and Pf6N2E2_3391 are separated by 124 nucleotides Pf6N2E2_3390 - hypothetical protein, at 3,924,559 to 3,924,675 _3390 Pf6N2E2_3391 - hypothetical protein, at 3,924,800 to 3,924,958 _3391 Position (kb) 3924 3925Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3923.836 kb on + strandat 3923.837 kb on - strandat 3923.973 kb on + strandat 3923.974 kb on - strandat 3923.990 kb on + strandat 3923.990 kb on + strandat 3923.990 kb on + strandat 3924.036 kb on + strandat 3924.073 kb on + strandat 3924.074 kb on - strandat 3924.079 kb on + strandat 3924.138 kb on + strandat 3924.138 kb on + strandat 3924.139 kb on - strandat 3924.140 kb on + strandat 3924.140 kb on + strandat 3924.140 kb on + strandat 3924.141 kb on - strandat 3924.141 kb on - strandat 3924.141 kb on - strandat 3924.233 kb on + strandat 3924.233 kb on + strandat 3924.233 kb on + strandat 3924.234 kb on - strandat 3924.234 kb on - strandat 3924.234 kb on - strandat 3924.268 kb on + strandat 3924.268 kb on + strandat 3924.269 kb on - strandat 3924.269 kb on - strandat 3924.269 kb on - strandat 3924.272 kb on + strandat 3924.272 kb on + strandat 3924.272 kb on + strandat 3924.272 kb on + strandat 3924.272 kb on + strandat 3924.272 kb on + strandat 3924.272 kb on + strandat 3924.272 kb on + strandat 3924.272 kb on + strandat 3924.272 kb on + strandat 3924.272 kb on + strandat 3924.272 kb on + strandat 3924.272 kb on + strandat 3924.272 kb on + strandat 3924.272 kb on + strandat 3924.272 kb on + strandat 3924.272 kb on + strandat 3924.273 kb on - strandat 3924.273 kb on - strandat 3924.273 kb on - strandat 3924.273 kb on - strandat 3924.273 kb on - strandat 3924.273 kb on - strandat 3924.273 kb on - strandat 3924.273 kb on - strandat 3924.273 kb on - strandat 3924.273 kb on - strandat 3924.273 kb on - strandat 3924.273 kb on - strandat 3924.273 kb on - strandat 3924.273 kb on - strandat 3924.273 kb on - strandat 3924.273 kb on - strandat 3924.273 kb on - strandat 3924.273 kb on - strandat 3924.274 kb on + strandat 3924.275 kb on - strandat 3924.275 kb on - strandat 3924.345 kb on + strandat 3924.345 kb on + strandat 3924.346 kb on - strandat 3924.346 kb on - strandat 3924.346 kb on - strandat 3924.346 kb on - strandat 3924.346 kb on - strandat 3924.346 kb on - strandat 3924.502 kb on + strandat 3924.502 kb on + strandat 3924.502 kb on + strandat 3924.502 kb on + strandat 3924.502 kb on + strandat 3924.502 kb on + strandat 3924.502 kb on + strandat 3924.503 kb on - strandat 3924.783 kb on + strandat 3924.783 kb on + strandat 3924.783 kb on + strandat 3924.783 kb on + strandat 3924.784 kb on - strandat 3924.784 kb on - strandat 3924.784 kb on - strandat 3924.854 kb on + strand, within Pf6N2E2_3391at 3924.854 kb on + strand, within Pf6N2E2_3391at 3924.854 kb on + strand, within Pf6N2E2_3391at 3924.855 kb on - strand, within Pf6N2E2_3391at 3924.855 kb on - strand, within Pf6N2E2_3391at 3924.855 kb on - strand, within Pf6N2E2_3391at 3924.931 kb on + strand, within Pf6N2E2_3391at 3924.941 kb on + strand, within Pf6N2E2_3391at 3924.942 kb on - strand, within Pf6N2E2_3391at 3924.942 kb on - strand, within Pf6N2E2_3391at 3924.942 kb on - strand, within Pf6N2E2_3391at 3924.942 kb on - strand, within Pf6N2E2_3391at 3924.956 kb on + strandat 3924.994 kb on + strandat 3924.994 kb on + strandat 3924.994 kb on + strandat 3924.994 kb on + strandat 3924.995 kb on - strandat 3924.995 kb on - strandat 3924.995 kb on - strandat 3924.995 kb on - strandat 3925.063 kb on + strandat 3925.064 kb on - strandat 3925.064 kb on - strandat 3925.106 kb on + strandat 3925.106 kb on + strandat 3925.106 kb on + strandat 3925.106 kb on + strandat 3925.106 kb on + strandat 3925.106 kb on + strandat 3925.107 kb on - strandat 3925.147 kb on + strandat 3925.147 kb on + strandat 3925.147 kb on + strandat 3925.147 kb on + strandat 3925.148 kb on - strandat 3925.148 kb on - strandat 3925.263 kb on + strandat 3925.264 kb on - strandat 3925.278 kb on + strandat 3925.278 kb on + strandat 3925.278 kb on + strandat 3925.279 kb on - strandat 3925.279 kb on - strandat 3925.279 kb on - strandat 3925.279 kb on - strandat 3925.279 kb on - strandat 3925.284 kb on + strandat 3925.284 kb on + strandat 3925.285 kb on - strandat 3925.285 kb on - strandat 3925.285 kb on - strandat 3925.288 kb on + strandat 3925.288 kb on + strandat 3925.288 kb on + strandat 3925.288 kb on + strandat 3925.288 kb on + strandat 3925.288 kb on + strandat 3925.288 kb on + strandat 3925.288 kb on + strandat 3925.289 kb on - strandat 3925.289 kb on - strandat 3925.289 kb on - strandat 3925.289 kb on - strandat 3925.296 kb on + strandat 3925.296 kb on + strandat 3925.297 kb on - strandat 3925.297 kb on - strandat 3925.299 kb on + strandat 3925.299 kb on + strandat 3925.299 kb on + strandat 3925.300 kb on - strandat 3925.300 kb on - strandat 3925.300 kb on - strandat 3925.300 kb on - strandat 3925.300 kb on - strandat 3925.300 kb on - strandat 3925.300 kb on - strandat 3925.381 kb on - strandat 3925.381 kb on - strandat 3925.414 kb on - strandat 3925.419 kb on + strandat 3925.419 kb on + strandat 3925.419 kb on + strandat 3925.420 kb on - strandat 3925.420 kb on - strandat 3925.420 kb on - strandat 3925.424 kb on + strandat 3925.424 kb on + strandat 3925.424 kb on + strandat 3925.424 kb on + strandat 3925.425 kb on - strandat 3925.425 kb on - strandat 3925.425 kb on - strandat 3925.425 kb on - strandat 3925.425 kb on - strandat 3925.425 kb on - strandat 3925.425 kb on - strandat 3925.426 kb on + strandat 3925.426 kb on + strandat 3925.426 kb on + strandat 3925.426 kb on + strandat 3925.426 kb on + strandat 3925.426 kb on + strandat 3925.427 kb on - strandat 3925.427 kb on - strandat 3925.427 kb on - strandat 3925.427 kb on - strandat 3925.427 kb on - strandat 3925.427 kb on - strandat 3925.427 kb on - strandat 3925.512 kb on + strandat 3925.513 kb on - strandat 3925.513 kb on - strandat 3925.553 kb on + strandat 3925.553 kb on + strandat 3925.553 kb on + strandat 3925.553 kb on + strandat 3925.553 kb on + strandat 3925.553 kb on + strandat 3925.554 kb on - strandat 3925.554 kb on - strandat 3925.554 kb on - strandat 3925.554 kb on - strandat 3925.557 kb on + strandat 3925.557 kb on + strandat 3925.558 kb on - strandat 3925.558 kb on - strandat 3925.578 kb on + strandat 3925.579 kb on - strandat 3925.653 kb on + strandat 3925.654 kb on - strandat 3925.688 kb on + strandat 3925.689 kb on - strandat 3925.694 kb on + strandat 3925.832 kb on + strandat 3925.832 kb on + strandat 3925.833 kb on - strandat 3925.910 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium chloride hemipentahydrate 0.00005 M
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3,923,836 + +0.3
3,923,837 - +0.8
3,923,973 + -0.1
3,923,974 - +0.2
3,923,990 + +1.3
3,923,990 + -0.5
3,923,990 + +0.9
3,924,036 + +0.8
3,924,073 + -0.4
3,924,074 - -0.7
3,924,079 + -1.7
3,924,138 + +0.4
3,924,138 + +0.3
3,924,139 - +0.2
3,924,140 + -0.4
3,924,140 + +0.2
3,924,140 + -1.2
3,924,141 - +0.4
3,924,141 - -1.7
3,924,141 - +0.9
3,924,233 + -1.1
3,924,233 + -0.2
3,924,233 + -0.4
3,924,234 - -1.1
3,924,234 - +0.5
3,924,234 - -0.9
3,924,268 + -0.8
3,924,268 + +0.3
3,924,269 - +0.3
3,924,269 - -0.2
3,924,269 - +0.7
3,924,272 + +0.9
3,924,272 + +0.3
3,924,272 + -0.3
3,924,272 + -0.7
3,924,272 + +0.3
3,924,272 + -0.6
3,924,272 + -0.1
3,924,272 + +0.2
3,924,272 + +1.3
3,924,272 + +1.0
3,924,272 + +0.2
3,924,272 + -1.6
3,924,272 + -1.7
3,924,272 + -0.2
3,924,272 + +0.3
3,924,272 + +0.3
3,924,272 + -2.2
3,924,273 - -0.4
3,924,273 - -0.5
3,924,273 - +0.7
3,924,273 - +1.7
3,924,273 - +1.6
3,924,273 - -0.0
3,924,273 - +0.9
3,924,273 - +1.4
3,924,273 - +0.5
3,924,273 - -1.4
3,924,273 - +0.6
3,924,273 - -0.0
3,924,273 - +0.9
3,924,273 - +0.5
3,924,273 - +0.1
3,924,273 - +0.4
3,924,273 - -0.3
3,924,273 - +0.2
3,924,274 + +0.1
3,924,275 - +1.6
3,924,275 - -0.3
3,924,345 + +1.3
3,924,345 + -1.1
3,924,346 - +0.4
3,924,346 - -0.2
3,924,346 - -0.0
3,924,346 - -0.1
3,924,346 - +0.1
3,924,346 - +0.7
3,924,502 + -0.5
3,924,502 + -1.0
3,924,502 + -0.3
3,924,502 + +0.3
3,924,502 + -0.8
3,924,502 + -0.8
3,924,502 + -0.2
3,924,503 - -3.1
3,924,783 + -0.0
3,924,783 + -0.3
3,924,783 + +0.8
3,924,783 + +0.2
3,924,784 - -0.3
3,924,784 - -0.4
3,924,784 - +0.0
3,924,854 + Pf6N2E2_3391 0.34 -0.3
3,924,854 + Pf6N2E2_3391 0.34 +0.3
3,924,854 + Pf6N2E2_3391 0.34 +0.3
3,924,855 - Pf6N2E2_3391 0.35 -0.7
3,924,855 - Pf6N2E2_3391 0.35 -0.5
3,924,855 - Pf6N2E2_3391 0.35 -0.1
3,924,931 + Pf6N2E2_3391 0.82 -0.4
3,924,941 + Pf6N2E2_3391 0.89 -2.5
3,924,942 - Pf6N2E2_3391 0.89 -0.9
3,924,942 - Pf6N2E2_3391 0.89 -0.5
3,924,942 - Pf6N2E2_3391 0.89 -0.8
3,924,942 - Pf6N2E2_3391 0.89 -0.0
3,924,956 + -0.8
3,924,994 + -2.7
3,924,994 + -1.0
3,924,994 + +0.0
3,924,994 + +0.4
3,924,995 - +0.0
3,924,995 - -0.0
3,924,995 - +0.9
3,924,995 - +0.9
3,925,063 + -0.8
3,925,064 - +1.3
3,925,064 - +0.5
3,925,106 + +0.7
3,925,106 + +0.7
3,925,106 + -0.1
3,925,106 + -0.8
3,925,106 + -0.2
3,925,106 + +0.0
3,925,107 - +0.1
3,925,147 + -0.4
3,925,147 + -0.4
3,925,147 + -0.7
3,925,147 + +0.3
3,925,148 - -1.2
3,925,148 - -0.9
3,925,263 + -0.4
3,925,264 - -0.2
3,925,278 + -0.2
3,925,278 + +1.7
3,925,278 + +0.2
3,925,279 - -0.7
3,925,279 - -0.6
3,925,279 - +1.4
3,925,279 - +0.3
3,925,279 - +0.5
3,925,284 + -0.1
3,925,284 + +0.3
3,925,285 - -0.0
3,925,285 - -0.1
3,925,285 - -0.0
3,925,288 + -0.2
3,925,288 + -0.9
3,925,288 + +0.3
3,925,288 + -0.6
3,925,288 + -1.3
3,925,288 + -0.5
3,925,288 + -2.2
3,925,288 + +1.0
3,925,289 - -0.1
3,925,289 - -0.0
3,925,289 - -0.0
3,925,289 - -0.5
3,925,296 + +1.3
3,925,296 + +1.4
3,925,297 - -1.1
3,925,297 - +0.7
3,925,299 + +1.9
3,925,299 + +0.2
3,925,299 + +0.3
3,925,300 - +1.3
3,925,300 - -0.4
3,925,300 - -0.5
3,925,300 - +0.6
3,925,300 - +0.4
3,925,300 - -0.0
3,925,300 - -1.5
3,925,381 - +0.5
3,925,381 - +1.4
3,925,414 - -0.2
3,925,419 + +0.2
3,925,419 + -0.2
3,925,419 + +0.9
3,925,420 - -0.9
3,925,420 - -0.9
3,925,420 - -1.6
3,925,424 + +0.2
3,925,424 + +1.6
3,925,424 + +0.3
3,925,424 + +2.1
3,925,425 - -0.4
3,925,425 - +0.3
3,925,425 - +0.9
3,925,425 - +0.0
3,925,425 - +0.4
3,925,425 - -0.0
3,925,425 - -0.1
3,925,426 + -0.3
3,925,426 + -2.2
3,925,426 + +0.2
3,925,426 + -1.2
3,925,426 + +0.2
3,925,426 + -0.7
3,925,427 - -1.4
3,925,427 - -0.1
3,925,427 - -0.3
3,925,427 - +0.1
3,925,427 - +0.9
3,925,427 - +0.6
3,925,427 - +1.0
3,925,512 + -0.7
3,925,513 - +0.8
3,925,513 - +1.3
3,925,553 + +1.0
3,925,553 + +0.1
3,925,553 + +1.3
3,925,553 + +2.9
3,925,553 + +0.4
3,925,553 + -0.0
3,925,554 - +0.2
3,925,554 - +0.6
3,925,554 - -0.1
3,925,554 - +1.4
3,925,557 + +0.3
3,925,557 + -0.4
3,925,558 - -0.2
3,925,558 - +0.0
3,925,578 + -2.4
3,925,579 - +1.0
3,925,653 + +0.1
3,925,654 - +1.5
3,925,688 + +0.9
3,925,689 - +1.1
3,925,694 + +0.3
3,925,832 + +0.1
3,925,832 + +0.7
3,925,833 - -0.4
3,925,910 - +0.5

Or see this region's nucleotide sequence