Experiment: Cadmium chloride hemipentahydrate 0.00005 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1796 and Pf6N2E2_1797 are separated by 440 nucleotides Pf6N2E2_1797 and Pf6N2E2_1798 are separated by 295 nucleotides
Pf6N2E2_1796 - Glycine cleavage system transcriptional activator GcvA, at 2,124,977 to 2,125,777
_1796
Pf6N2E2_1797 - Transcriptional regulator, at 2,126,218 to 2,127,183
_1797
Pf6N2E2_1798 - Argininosuccinate lyase (EC 4.3.2.1), at 2,127,479 to 2,128,906
_1798
Position (kb)
2126
2127
2128 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2125.487 kb on - strand, within Pf6N2E2_1796 at 2125.895 kb on + strand at 2125.962 kb on - strand at 2126.086 kb on + strand at 2126.087 kb on - strand at 2126.087 kb on - strand at 2126.133 kb on + strand at 2126.134 kb on - strand at 2126.134 kb on - strand at 2126.141 kb on + strand at 2126.157 kb on - strand at 2126.284 kb on + strand at 2126.285 kb on - strand at 2126.382 kb on - strand, within Pf6N2E2_1797 at 2126.619 kb on - strand, within Pf6N2E2_1797 at 2126.627 kb on + strand, within Pf6N2E2_1797 at 2126.902 kb on + strand, within Pf6N2E2_1797 at 2127.191 kb on - strand at 2127.639 kb on + strand, within Pf6N2E2_1798 at 2127.752 kb on - strand, within Pf6N2E2_1798 at 2128.030 kb on - strand, within Pf6N2E2_1798 at 2128.030 kb on - strand, within Pf6N2E2_1798 at 2128.054 kb on - strand, within Pf6N2E2_1798 at 2128.054 kb on - strand, within Pf6N2E2_1798 at 2128.057 kb on + strand, within Pf6N2E2_1798 at 2128.057 kb on + strand, within Pf6N2E2_1798 at 2128.057 kb on + strand, within Pf6N2E2_1798 at 2128.057 kb on + strand, within Pf6N2E2_1798 at 2128.057 kb on + strand, within Pf6N2E2_1798 at 2128.058 kb on - strand, within Pf6N2E2_1798 at 2128.058 kb on - strand, within Pf6N2E2_1798 at 2128.058 kb on - strand, within Pf6N2E2_1798 at 2128.058 kb on - strand, within Pf6N2E2_1798
Per-strain Table
Position Strand Gene LocusTag Fraction Cadmium chloride hemipentahydrate 0.00005 M remove 2,125,487 - Pf6N2E2_1796 0.64 -0.2 2,125,895 + +0.5 2,125,962 - +1.8 2,126,086 + +1.0 2,126,087 - +0.5 2,126,087 - +0.3 2,126,133 + +0.1 2,126,134 - +0.4 2,126,134 - +0.4 2,126,141 + -0.2 2,126,157 - +0.9 2,126,284 + +1.1 2,126,285 - +1.0 2,126,382 - Pf6N2E2_1797 0.17 -1.1 2,126,619 - Pf6N2E2_1797 0.42 -1.2 2,126,627 + Pf6N2E2_1797 0.42 -0.3 2,126,902 + Pf6N2E2_1797 0.71 -0.5 2,127,191 - +0.5 2,127,639 + Pf6N2E2_1798 0.11 -0.4 2,127,752 - Pf6N2E2_1798 0.19 +1.1 2,128,030 - Pf6N2E2_1798 0.39 -1.2 2,128,030 - Pf6N2E2_1798 0.39 +0.8 2,128,054 - Pf6N2E2_1798 0.40 -1.8 2,128,054 - Pf6N2E2_1798 0.40 -0.5 2,128,057 + Pf6N2E2_1798 0.40 +0.4 2,128,057 + Pf6N2E2_1798 0.40 +0.0 2,128,057 + Pf6N2E2_1798 0.40 +0.2 2,128,057 + Pf6N2E2_1798 0.40 +0.2 2,128,057 + Pf6N2E2_1798 0.40 +0.5 2,128,058 - Pf6N2E2_1798 0.41 -1.2 2,128,058 - Pf6N2E2_1798 0.41 -0.5 2,128,058 - Pf6N2E2_1798 0.41 +0.7 2,128,058 - Pf6N2E2_1798 0.41 +0.9
Or see this region's nucleotide sequence