Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1509

Experiment: Cadmium chloride hemipentahydrate 0.00005 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1507 and Pf6N2E2_1508 overlap by 4 nucleotidesPf6N2E2_1508 and Pf6N2E2_1509 are separated by 131 nucleotidesPf6N2E2_1509 and Pf6N2E2_1510 are separated by 86 nucleotidesPf6N2E2_1510 and Pf6N2E2_1511 are separated by 25 nucleotides Pf6N2E2_1507 - Sensor protein basS/pmrB (EC 2.7.3.-), at 1,761,328 to 1,762,686 _1507 Pf6N2E2_1508 - DNA-binding response regulator, at 1,762,683 to 1,763,342 _1508 Pf6N2E2_1509 - FIG00450070: hypothetical protein, at 1,763,474 to 1,763,797 _1509 Pf6N2E2_1510 - FIG00450095: hypothetical protein, at 1,763,884 to 1,764,354 _1510 Pf6N2E2_1511 - Sulfite reductase [NADPH] flavoprotein alpha-component (EC 1.8.1.2), at 1,764,380 to 1,766,560 _1511 Position (kb) 1763 1764Strain fitness (log2 ratio) -2 -1 0 1 2at 1762.514 kb on - strand, within Pf6N2E2_1507at 1762.514 kb on - strand, within Pf6N2E2_1507at 1762.765 kb on + strand, within Pf6N2E2_1508at 1762.765 kb on + strand, within Pf6N2E2_1508at 1762.766 kb on - strand, within Pf6N2E2_1508at 1762.766 kb on - strand, within Pf6N2E2_1508at 1763.210 kb on - strand, within Pf6N2E2_1508at 1763.210 kb on - strand, within Pf6N2E2_1508at 1763.331 kb on + strandat 1763.387 kb on + strandat 1763.440 kb on - strandat 1763.508 kb on + strand, within Pf6N2E2_1509at 1763.508 kb on + strand, within Pf6N2E2_1509at 1763.508 kb on + strand, within Pf6N2E2_1509at 1763.509 kb on - strand, within Pf6N2E2_1509at 1763.509 kb on - strand, within Pf6N2E2_1509at 1763.509 kb on - strand, within Pf6N2E2_1509at 1763.509 kb on - strand, within Pf6N2E2_1509at 1763.509 kb on - strand, within Pf6N2E2_1509at 1763.654 kb on + strand, within Pf6N2E2_1509at 1763.654 kb on + strand, within Pf6N2E2_1509at 1763.654 kb on + strand, within Pf6N2E2_1509at 1763.742 kb on - strand, within Pf6N2E2_1509at 1763.957 kb on + strand, within Pf6N2E2_1510at 1763.958 kb on - strand, within Pf6N2E2_1510at 1763.958 kb on - strand, within Pf6N2E2_1510at 1763.983 kb on + strand, within Pf6N2E2_1510at 1764.001 kb on + strand, within Pf6N2E2_1510at 1764.002 kb on - strand, within Pf6N2E2_1510at 1764.002 kb on - strand, within Pf6N2E2_1510at 1764.002 kb on - strand, within Pf6N2E2_1510at 1764.013 kb on + strand, within Pf6N2E2_1510at 1764.014 kb on - strand, within Pf6N2E2_1510at 1764.076 kb on + strand, within Pf6N2E2_1510at 1764.076 kb on + strand, within Pf6N2E2_1510at 1764.077 kb on - strand, within Pf6N2E2_1510at 1764.079 kb on + strand, within Pf6N2E2_1510at 1764.079 kb on + strand, within Pf6N2E2_1510at 1764.080 kb on - strand, within Pf6N2E2_1510at 1764.130 kb on + strandat 1764.321 kb on + strandat 1764.321 kb on + strandat 1764.322 kb on - strandat 1764.322 kb on - strandat 1764.339 kb on + strandat 1764.340 kb on - strandat 1764.343 kb on + strandat 1764.343 kb on + strandat 1764.343 kb on + strandat 1764.344 kb on - strandat 1764.344 kb on - strandat 1764.353 kb on - strandat 1764.435 kb on + strandat 1764.456 kb on + strandat 1764.608 kb on + strand, within Pf6N2E2_1511at 1764.608 kb on + strand, within Pf6N2E2_1511at 1764.608 kb on + strand, within Pf6N2E2_1511at 1764.609 kb on - strand, within Pf6N2E2_1511at 1764.609 kb on - strand, within Pf6N2E2_1511at 1764.609 kb on - strand, within Pf6N2E2_1511at 1764.609 kb on - strand, within Pf6N2E2_1511at 1764.674 kb on + strand, within Pf6N2E2_1511at 1764.674 kb on + strand, within Pf6N2E2_1511at 1764.674 kb on + strand, within Pf6N2E2_1511at 1764.675 kb on - strand, within Pf6N2E2_1511at 1764.675 kb on - strand, within Pf6N2E2_1511

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium chloride hemipentahydrate 0.00005 M
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1,762,514 - Pf6N2E2_1507 0.87 +0.6
1,762,514 - Pf6N2E2_1507 0.87 +1.5
1,762,765 + Pf6N2E2_1508 0.12 +1.5
1,762,765 + Pf6N2E2_1508 0.12 +1.0
1,762,766 - Pf6N2E2_1508 0.13 -1.8
1,762,766 - Pf6N2E2_1508 0.13 -0.9
1,763,210 - Pf6N2E2_1508 0.80 -1.0
1,763,210 - Pf6N2E2_1508 0.80 -2.1
1,763,331 + -0.3
1,763,387 + +0.5
1,763,440 - -2.4
1,763,508 + Pf6N2E2_1509 0.10 -0.4
1,763,508 + Pf6N2E2_1509 0.10 -1.6
1,763,508 + Pf6N2E2_1509 0.10 -0.7
1,763,509 - Pf6N2E2_1509 0.11 -1.4
1,763,509 - Pf6N2E2_1509 0.11 -1.4
1,763,509 - Pf6N2E2_1509 0.11 -1.0
1,763,509 - Pf6N2E2_1509 0.11 -0.7
1,763,509 - Pf6N2E2_1509 0.11 -1.5
1,763,654 + Pf6N2E2_1509 0.56 +0.9
1,763,654 + Pf6N2E2_1509 0.56 +0.1
1,763,654 + Pf6N2E2_1509 0.56 -0.3
1,763,742 - Pf6N2E2_1509 0.83 -1.4
1,763,957 + Pf6N2E2_1510 0.15 +0.8
1,763,958 - Pf6N2E2_1510 0.16 +0.5
1,763,958 - Pf6N2E2_1510 0.16 +0.8
1,763,983 + Pf6N2E2_1510 0.21 +0.5
1,764,001 + Pf6N2E2_1510 0.25 +0.3
1,764,002 - Pf6N2E2_1510 0.25 +0.2
1,764,002 - Pf6N2E2_1510 0.25 +0.3
1,764,002 - Pf6N2E2_1510 0.25 +0.1
1,764,013 + Pf6N2E2_1510 0.27 -0.1
1,764,014 - Pf6N2E2_1510 0.28 -1.0
1,764,076 + Pf6N2E2_1510 0.41 -0.3
1,764,076 + Pf6N2E2_1510 0.41 -0.9
1,764,077 - Pf6N2E2_1510 0.41 -0.8
1,764,079 + Pf6N2E2_1510 0.41 +0.2
1,764,079 + Pf6N2E2_1510 0.41 -0.5
1,764,080 - Pf6N2E2_1510 0.42 -0.2
1,764,130 + +2.5
1,764,321 + +0.6
1,764,321 + -1.0
1,764,322 - -0.0
1,764,322 - -1.8
1,764,339 + +0.5
1,764,340 - +1.1
1,764,343 + +1.5
1,764,343 + +1.5
1,764,343 + +1.0
1,764,344 - -0.3
1,764,344 - -0.2
1,764,353 - +0.3
1,764,435 + -0.5
1,764,456 + +0.6
1,764,608 + Pf6N2E2_1511 0.10 -1.2
1,764,608 + Pf6N2E2_1511 0.10 -0.2
1,764,608 + Pf6N2E2_1511 0.10 -0.3
1,764,609 - Pf6N2E2_1511 0.10 +0.5
1,764,609 - Pf6N2E2_1511 0.10 -1.5
1,764,609 - Pf6N2E2_1511 0.10 +0.0
1,764,609 - Pf6N2E2_1511 0.10 +0.1
1,764,674 + Pf6N2E2_1511 0.13 +0.6
1,764,674 + Pf6N2E2_1511 0.13 -0.0
1,764,674 + Pf6N2E2_1511 0.13 +0.4
1,764,675 - Pf6N2E2_1511 0.14 +0.3
1,764,675 - Pf6N2E2_1511 0.14 -1.1

Or see this region's nucleotide sequence