Experiment: Formate with sodium chlorite 3.125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS05105 and MMP_RS05110 are separated by 4 nucleotides MMP_RS05110 and MMP_RS05115 are separated by 10 nucleotides MMP_RS05115 and MMP_RS05120 are separated by 143 nucleotides
MMP_RS05105: MMP_RS05105 - thymidylate synthase, at 972,543 to 973,418
_RS05105
MMP_RS05110: MMP_RS05110 - 16S ribosomal RNA methyltransferase A, at 973,423 to 974,226
_RS05110
MMP_RS05115: MMP_RS05115 - 50S ribosomal protein L11 methyltransferase, at 974,237 to 975,124
_RS05115
MMP_RS05120: MMP_RS05120 - DNA topoisomerase VI subunit B, at 975,268 to 977,262
_RS05120
Position (kb) 974
975
976 Strain fitness (log2 ratio) -2
-1
0
1
2 at 973.280 kb on + strand, within MMP_RS05105 at 973.287 kb on - strand, within MMP_RS05105 at 973.287 kb on - strand, within MMP_RS05105 at 973.287 kb on - strand, within MMP_RS05105 at 973.298 kb on - strand, within MMP_RS05105 at 973.299 kb on + strand, within MMP_RS05105 at 973.300 kb on - strand, within MMP_RS05105 at 973.421 kb on - strand at 973.453 kb on - strand at 973.506 kb on - strand, within MMP_RS05110 at 973.671 kb on + strand, within MMP_RS05110 at 973.711 kb on - strand, within MMP_RS05110 at 973.712 kb on + strand, within MMP_RS05110 at 973.775 kb on - strand, within MMP_RS05110 at 973.776 kb on + strand, within MMP_RS05110 at 973.810 kb on + strand, within MMP_RS05110 at 973.854 kb on + strand, within MMP_RS05110 at 973.987 kb on - strand, within MMP_RS05110 at 973.987 kb on - strand, within MMP_RS05110 at 974.243 kb on + strand at 974.243 kb on + strand at 974.249 kb on - strand at 974.365 kb on - strand, within MMP_RS05115 at 974.413 kb on - strand, within MMP_RS05115 at 974.413 kb on - strand, within MMP_RS05115 at 974.413 kb on - strand, within MMP_RS05115 at 974.413 kb on - strand, within MMP_RS05115 at 974.414 kb on + strand, within MMP_RS05115 at 974.415 kb on - strand, within MMP_RS05115 at 974.416 kb on + strand, within MMP_RS05115 at 974.416 kb on + strand, within MMP_RS05115 at 974.416 kb on + strand, within MMP_RS05115 at 974.416 kb on + strand, within MMP_RS05115 at 974.417 kb on - strand, within MMP_RS05115 at 974.417 kb on - strand, within MMP_RS05115 at 974.417 kb on - strand, within MMP_RS05115 at 974.417 kb on - strand, within MMP_RS05115 at 974.418 kb on + strand, within MMP_RS05115 at 974.418 kb on + strand, within MMP_RS05115 at 974.418 kb on + strand, within MMP_RS05115 at 974.420 kb on + strand, within MMP_RS05115 at 974.623 kb on - strand, within MMP_RS05115 at 974.649 kb on + strand, within MMP_RS05115 at 974.936 kb on + strand, within MMP_RS05115 at 974.970 kb on + strand, within MMP_RS05115 at 974.970 kb on + strand, within MMP_RS05115 at 975.037 kb on - strand at 975.237 kb on - strand at 975.273 kb on - strand at 975.522 kb on - strand at 975.742 kb on - strand at 976.121 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate with sodium chlorite 3.125 mM remove 973,280 + MMP_RS05105 0.84 -0.0 973,287 - MMP_RS05105 0.85 -0.3 973,287 - MMP_RS05105 0.85 +0.7 973,287 - MMP_RS05105 0.85 -0.5 973,298 - MMP_RS05105 0.86 -0.1 973,299 + MMP_RS05105 0.86 +0.7 973,300 - MMP_RS05105 0.86 -0.3 973,421 - +1.0 973,453 - -0.4 973,506 - MMP_RS05110 0.10 +0.1 973,671 + MMP_RS05110 0.31 +0.2 973,711 - MMP_RS05110 0.36 -0.7 973,712 + MMP_RS05110 0.36 -0.3 973,775 - MMP_RS05110 0.44 +0.6 973,776 + MMP_RS05110 0.44 -0.8 973,810 + MMP_RS05110 0.48 +0.2 973,854 + MMP_RS05110 0.54 -1.0 973,987 - MMP_RS05110 0.70 +0.2 973,987 - MMP_RS05110 0.70 -0.6 974,243 + -2.1 974,243 + -0.1 974,249 - -0.3 974,365 - MMP_RS05115 0.14 -0.3 974,413 - MMP_RS05115 0.20 +0.5 974,413 - MMP_RS05115 0.20 -0.5 974,413 - MMP_RS05115 0.20 -0.0 974,413 - MMP_RS05115 0.20 +0.1 974,414 + MMP_RS05115 0.20 -0.5 974,415 - MMP_RS05115 0.20 -0.7 974,416 + MMP_RS05115 0.20 -0.1 974,416 + MMP_RS05115 0.20 -1.2 974,416 + MMP_RS05115 0.20 +0.2 974,416 + MMP_RS05115 0.20 -0.8 974,417 - MMP_RS05115 0.20 -0.4 974,417 - MMP_RS05115 0.20 -0.3 974,417 - MMP_RS05115 0.20 -1.2 974,417 - MMP_RS05115 0.20 -0.6 974,418 + MMP_RS05115 0.20 -1.1 974,418 + MMP_RS05115 0.20 +0.3 974,418 + MMP_RS05115 0.20 -0.3 974,420 + MMP_RS05115 0.21 +0.6 974,623 - MMP_RS05115 0.43 -0.6 974,649 + MMP_RS05115 0.46 +0.0 974,936 + MMP_RS05115 0.79 +0.7 974,970 + MMP_RS05115 0.83 -2.0 974,970 + MMP_RS05115 0.83 +0.5 975,037 - +0.1 975,237 - +0.1 975,273 - -0.0 975,522 - -1.6 975,742 - +2.4 976,121 - +0.6
Or see this region's nucleotide sequence