Experiment: Formate with sodium chlorite 3.125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03650 and MMP_RS03655 are separated by 27 nucleotides MMP_RS03655 and MMP_RS03660 are separated by 69 nucleotides
MMP_RS03650: MMP_RS03650 - leucine--tRNA ligase, at 686,587 to 689,454
_RS03650
MMP_RS03655: MMP_RS03655 - DUF1894 domain-containing protein, at 689,482 to 689,799
_RS03655
MMP_RS03660: MMP_RS03660 - MATE family efflux transporter, at 689,869 to 691,212
_RS03660
Position (kb) 689
690 Strain fitness (log2 ratio) -1
0
1
2 at 689.443 kb on - strand at 689.501 kb on + strand at 689.600 kb on - strand, within MMP_RS03655 at 689.613 kb on + strand, within MMP_RS03655 at 689.660 kb on + strand, within MMP_RS03655 at 689.660 kb on + strand, within MMP_RS03655 at 689.664 kb on + strand, within MMP_RS03655 at 689.706 kb on - strand, within MMP_RS03655 at 689.707 kb on + strand, within MMP_RS03655 at 689.707 kb on + strand, within MMP_RS03655 at 689.707 kb on + strand, within MMP_RS03655 at 689.827 kb on + strand at 689.871 kb on + strand at 689.878 kb on - strand at 689.879 kb on + strand at 689.879 kb on + strand at 690.172 kb on - strand, within MMP_RS03660 at 690.209 kb on + strand, within MMP_RS03660 at 690.215 kb on + strand, within MMP_RS03660 at 690.217 kb on + strand, within MMP_RS03660 at 690.217 kb on + strand, within MMP_RS03660 at 690.304 kb on + strand, within MMP_RS03660 at 690.306 kb on + strand, within MMP_RS03660 at 690.376 kb on + strand, within MMP_RS03660 at 690.413 kb on - strand, within MMP_RS03660 at 690.413 kb on - strand, within MMP_RS03660 at 690.414 kb on + strand, within MMP_RS03660 at 690.416 kb on + strand, within MMP_RS03660 at 690.457 kb on - strand, within MMP_RS03660 at 690.457 kb on - strand, within MMP_RS03660 at 690.457 kb on - strand, within MMP_RS03660 at 690.494 kb on + strand, within MMP_RS03660 at 690.577 kb on - strand, within MMP_RS03660 at 690.580 kb on - strand, within MMP_RS03660 at 690.611 kb on + strand, within MMP_RS03660 at 690.649 kb on - strand, within MMP_RS03660 at 690.652 kb on - strand, within MMP_RS03660 at 690.653 kb on + strand, within MMP_RS03660 at 690.658 kb on - strand, within MMP_RS03660 at 690.661 kb on - strand, within MMP_RS03660 at 690.662 kb on + strand, within MMP_RS03660 at 690.676 kb on - strand, within MMP_RS03660 at 690.676 kb on - strand, within MMP_RS03660 at 690.677 kb on + strand, within MMP_RS03660 at 690.685 kb on + strand, within MMP_RS03660 at 690.761 kb on + strand, within MMP_RS03660
Per-strain Table
Position Strand Gene LocusTag Fraction Formate with sodium chlorite 3.125 mM remove 689,443 - +1.1 689,501 + -0.3 689,600 - MMP_RS03655 0.37 -0.6 689,613 + MMP_RS03655 0.41 -0.0 689,660 + MMP_RS03655 0.56 -0.3 689,660 + MMP_RS03655 0.56 -0.8 689,664 + MMP_RS03655 0.57 -0.6 689,706 - MMP_RS03655 0.70 +1.3 689,707 + MMP_RS03655 0.71 -0.2 689,707 + MMP_RS03655 0.71 -0.9 689,707 + MMP_RS03655 0.71 -1.3 689,827 + +0.4 689,871 + -0.7 689,878 - +0.1 689,879 + +0.4 689,879 + -0.1 690,172 - MMP_RS03660 0.23 +0.8 690,209 + MMP_RS03660 0.25 +0.3 690,215 + MMP_RS03660 0.26 -0.6 690,217 + MMP_RS03660 0.26 +0.2 690,217 + MMP_RS03660 0.26 +0.5 690,304 + MMP_RS03660 0.32 +0.1 690,306 + MMP_RS03660 0.33 -0.9 690,376 + MMP_RS03660 0.38 -0.1 690,413 - MMP_RS03660 0.40 -0.7 690,413 - MMP_RS03660 0.40 -0.4 690,414 + MMP_RS03660 0.41 +0.5 690,416 + MMP_RS03660 0.41 -0.4 690,457 - MMP_RS03660 0.44 -0.8 690,457 - MMP_RS03660 0.44 -1.1 690,457 - MMP_RS03660 0.44 +1.7 690,494 + MMP_RS03660 0.47 -0.2 690,577 - MMP_RS03660 0.53 +0.5 690,580 - MMP_RS03660 0.53 +2.0 690,611 + MMP_RS03660 0.55 -0.3 690,649 - MMP_RS03660 0.58 +0.1 690,652 - MMP_RS03660 0.58 -0.2 690,653 + MMP_RS03660 0.58 +1.6 690,658 - MMP_RS03660 0.59 +0.1 690,661 - MMP_RS03660 0.59 +0.3 690,662 + MMP_RS03660 0.59 +0.4 690,676 - MMP_RS03660 0.60 -0.3 690,676 - MMP_RS03660 0.60 -0.3 690,677 + MMP_RS03660 0.60 +0.1 690,685 + MMP_RS03660 0.61 +0.4 690,761 + MMP_RS03660 0.66 +0.8
Or see this region's nucleotide sequence