Strain Fitness in Pantoea sp. MT58 around IAI47_18085

Experiment: Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
3,845,226	+				+2.3
3,845,226	+				+0.2
3,845,227	-				+0.1
3,845,251	+				+0.4
3,845,265	+				-0.7
3,845,297	+				-1.1
3,845,297	+				+0.7
3,845,298	-				-1.0
3,845,298	-				-0.8
3,845,298	-				-0.7
3,845,298	-				+1.1
3,845,298	-				-2.4
3,845,298	-				+0.4
3,845,298	-				+1.0
3,845,298	-				+1.4
3,845,298	-				-0.9
3,845,298	-				+1.6
3,845,305	+				+1.3
3,845,306	-				-0.4
3,845,309	+				+0.6
3,845,310	-				+2.8
3,845,310	-				+0.8
3,845,310	-				-0.2
3,845,310	-				-0.3
3,845,317	+				+1.1
3,845,317	+				-2.4
3,845,317	+				-1.2
3,845,317	+				+2.4
3,845,317	+				+2.1
3,845,317	+				-0.2
3,845,317	+				+0.4
3,845,317	+				-1.6
3,845,317	+				+0.3
3,845,317	+				-1.8
3,845,317	+				+2.3
3,845,317	+				+1.5
3,845,318	-				-1.2
3,845,318	-				-2.2
3,845,318	-				-0.2
3,845,318	-				-1.3
3,845,318	-				-1.3
3,845,318	-				-1.3
3,845,319	+				-0.5
3,845,319	+				-0.4
3,845,319	+				+1.5
3,845,319	+				-0.7
3,845,319	+				+0.8
3,845,319	+				+0.8
3,845,319	+				+0.7
3,845,319	+				+1.2
3,845,320	-				+3.3
3,845,320	-				-2.8
3,845,320	-				+0.7
3,845,320	-				+1.3
3,845,320	-				-2.4
3,845,334	+				-1.6
3,845,334	+				-1.2
3,845,334	+				+0.9
3,845,334	+				+0.5
3,845,334	+				+1.2
3,845,335	-				+0.9
3,845,335	-				+0.4
3,845,335	-				+2.4
3,845,335	-				+0.4
3,845,335	-				+1.0
3,845,335	-				-1.9
3,845,338	+				+2.4
3,845,338	+				-0.6
3,845,338	+				+1.3
3,845,338	+				+1.2
3,845,338	+				+1.3
3,845,338	+				+0.8
3,845,338	+				-0.1
3,845,338	+				+0.8
3,845,338	+				+0.4
3,845,338	+				+0.1
3,845,339	-				-2.0
3,845,339	-				+1.3
3,845,339	-				-0.2
3,845,339	-				-1.1
3,845,339	-				-0.3
3,845,339	-				+1.2
3,845,339	-				+3.7
3,845,339	-				+2.0
3,845,339	-				-0.0
3,845,339	-				-1.3
3,845,339	-				+1.8
3,845,339	-				+0.7
3,845,339	-				-1.0
3,845,339	-				+0.8
3,845,339	-				+0.8
3,845,352	+				+1.7
3,845,353	-				-0.3
3,845,374	-				+0.7
3,845,383	+				+1.1
3,845,384	-				-1.3
3,845,384	-				+2.0
3,845,424	+		IAI47_18080	0.17	+1.5
3,845,425	-		IAI47_18080	0.17	+0.9
3,845,425	-		IAI47_18080	0.17	-0.7
3,845,435	+		IAI47_18080	0.19	-2.5
3,845,435	+		IAI47_18080	0.19	+1.6
3,845,435	+		IAI47_18080	0.19	-0.4
3,845,435	+		IAI47_18080	0.19	+0.0
3,845,435	+		IAI47_18080	0.19	+0.8
3,845,435	+		IAI47_18080	0.19	-0.8
3,845,435	+		IAI47_18080	0.19	-2.4
3,845,435	+		IAI47_18080	0.19	+0.4
3,845,435	+		IAI47_18080	0.19	+0.9
3,845,435	+		IAI47_18080	0.19	+1.2
3,845,436	-		IAI47_18080	0.19	+0.0
3,845,436	-		IAI47_18080	0.19	+1.1
3,845,436	-		IAI47_18080	0.19	-2.5
3,845,436	-		IAI47_18080	0.19	+0.4
3,845,436	-		IAI47_18080	0.19	+1.3
3,845,436	-		IAI47_18080	0.19	+1.3
3,845,436	-		IAI47_18080	0.19	+0.9
3,845,436	-		IAI47_18080	0.19	+0.2
3,845,436	-		IAI47_18080	0.19	+0.8
3,845,436	-		IAI47_18080	0.19	+1.0
3,845,436	-		IAI47_18080	0.19	-2.7
3,845,436	-		IAI47_18080	0.19	+0.1
3,845,436	-		IAI47_18080	0.19	-1.3
3,845,436	-		IAI47_18080	0.19	-0.2
3,845,438	+		IAI47_18080	0.20	-1.3
3,845,439	-		IAI47_18080	0.20	-0.9
3,845,439	-		IAI47_18080	0.20	+2.5
3,845,439	-		IAI47_18080	0.20	+0.6
3,845,439	-		IAI47_18080	0.20	-1.9
3,845,439	-		IAI47_18080	0.20	+1.9
3,845,455	+		IAI47_18080	0.23	+1.7
3,845,455	+		IAI47_18080	0.23	+0.5
3,845,455	+		IAI47_18080	0.23	+1.9
3,845,456	-		IAI47_18080	0.23	-0.2
3,845,456	-		IAI47_18080	0.23	-1.3
3,845,461	+		IAI47_18080	0.24	+2.4
3,845,462	-		IAI47_18080	0.24	+0.7
3,845,464	+		IAI47_18080	0.25	-0.6
3,845,464	+		IAI47_18080	0.25	-1.2
3,845,464	+		IAI47_18080	0.25	-0.8
3,845,464	+		IAI47_18080	0.25	+0.4
3,845,464	-		IAI47_18080	0.25	+0.4
3,845,465	-		IAI47_18080	0.25	-0.2
3,845,465	-		IAI47_18080	0.25	-0.7
3,845,529	-		IAI47_18080	0.37	+0.2
3,845,529	-		IAI47_18080	0.37	+1.1
3,845,551	+		IAI47_18080	0.42	+0.8
3,845,551	+		IAI47_18080	0.42	-1.4
3,845,551	+		IAI47_18080	0.42	+3.1
3,845,551	+		IAI47_18080	0.42	-0.8
3,845,551	+		IAI47_18080	0.42	+1.9
3,845,551	+		IAI47_18080	0.42	+0.2
3,845,552	-		IAI47_18080	0.42	-2.8
3,845,552	-		IAI47_18080	0.42	-0.3
3,845,552	-		IAI47_18080	0.42	+1.1
3,845,552	-		IAI47_18080	0.42	+2.3
3,845,555	+		IAI47_18080	0.43	-1.6
3,845,555	+		IAI47_18080	0.43	-1.9
3,845,555	+		IAI47_18080	0.43	-1.0
3,845,555	+		IAI47_18080	0.43	-0.6
3,845,555	+		IAI47_18080	0.43	-0.6
3,845,555	+		IAI47_18080	0.43	+1.0
3,845,555	+		IAI47_18080	0.43	-0.7
3,845,555	+		IAI47_18080	0.43	-2.3
3,845,555	+		IAI47_18080	0.43	-2.1
3,845,555	+		IAI47_18080	0.43	-1.0
3,845,555	+		IAI47_18080	0.43	-1.0
3,845,556	-		IAI47_18080	0.43	-1.2
3,845,556	-		IAI47_18080	0.43	+1.0
3,845,556	-		IAI47_18080	0.43	-0.4
3,845,556	-		IAI47_18080	0.43	+0.1
3,845,556	-		IAI47_18080	0.43	+1.4
3,845,556	-		IAI47_18080	0.43	+2.9
3,845,556	-		IAI47_18080	0.43	-0.6
3,845,556	-		IAI47_18080	0.43	-1.1
3,845,556	-		IAI47_18080	0.43	+1.3
3,845,556	-		IAI47_18080	0.43	-2.9
3,845,556	-		IAI47_18080	0.43	+0.3
3,845,556	-		IAI47_18080	0.43	+1.9
3,845,615	+		IAI47_18080	0.54	-1.6
3,845,615	+		IAI47_18080	0.54	-0.3
3,845,615	+		IAI47_18080	0.54	+3.3
3,845,635	+		IAI47_18080	0.58	-1.1
3,845,635	+		IAI47_18080	0.58	-1.6
3,845,636	-		IAI47_18080	0.59	-2.4
3,845,657	+		IAI47_18080	0.63	-1.0
3,845,657	+		IAI47_18080	0.63	+0.0
3,845,658	-		IAI47_18080	0.63	-2.1
3,845,658	-		IAI47_18080	0.63	-0.8
3,845,753	-		IAI47_18080	0.82	-0.1
3,845,764	+		IAI47_18080	0.84	-1.6
3,845,764	+		IAI47_18080	0.84	+1.1
3,845,764	+		IAI47_18080	0.84	+2.1
3,845,765	-		IAI47_18080	0.84	-0.2
3,845,765	-		IAI47_18080	0.84	-1.8
3,845,875	-				+1.2
3,845,875	-				+1.3
3,845,875	-				+1.8
3,845,875	-				+0.4
3,845,890	+				+1.4
3,845,891	-				+0.7
3,845,891	-				-1.3
3,845,895	+				-1.3
3,845,895	+				-1.6
3,845,896	-				+0.0
3,845,934	+				+0.8
3,845,934	+				+1.0
3,845,935	-				-1.4
3,845,935	-				+0.7
3,845,962	-				+0.2
3,845,977	-				-0.1
3,846,036	+				+0.6
3,846,036	+				+1.7
3,846,037	-				-1.5
3,846,090	+				-0.7
3,846,090	+				+0.4
3,846,090	+				-2.9
3,846,090	+				+0.4
3,846,091	-				-1.2
3,846,091	-				-1.0
3,846,091	-				-1.2
3,846,091	-				-0.7
3,846,091	-				+2.6
3,846,094	+				+0.8
3,846,094	+				+0.2
3,846,094	+				-0.0
3,846,094	+				-1.6
3,846,095	-				+0.0
3,846,095	-				-1.0
3,846,095	-				-1.2
3,846,095	-				-0.5
3,846,103	+				+0.1
3,846,103	+				-0.4
3,846,103	+				+0.4
3,846,103	+				+1.0
3,846,103	+				-1.0
3,846,103	+				-1.2
3,846,103	+				-0.7
3,846,104	-				-1.6
3,846,104	-				+3.4
3,846,104	-				+0.8
3,846,117	+				+0.8
3,846,117	+				+0.2
3,846,117	+				-0.8
3,846,117	+				+1.1
3,846,117	+				-0.7
3,846,117	+				-0.4
3,846,118	-				-0.3
3,846,126	+				+2.3
3,846,126	+				-1.0
3,846,127	-				-0.3
3,846,127	-				+1.2
3,846,127	-				-0.3
3,846,128	+				+0.5
3,846,128	+				+2.4
3,846,128	+				+0.2
3,846,128	+				-1.8
3,846,128	+				-1.2
3,846,128	+				+0.6
3,846,129	-				+0.9
3,846,129	-				+2.6
3,846,129	-				-1.6
3,846,134	+				+1.0
3,846,171	+				+0.9
3,846,171	+				-0.4
3,846,172	-				-0.5
3,846,172	-				-0.1
3,846,172	-				+0.8
3,846,172	-				-1.4
3,846,186	+				-0.3
3,846,186	+				+0.9
3,846,186	+				-1.3
3,846,187	-				-0.8
3,846,187	-				-3.2
3,846,187	-				-1.9
3,846,187	-				+0.8
3,846,187	-				+0.2
3,846,187	-				+0.0
3,846,187	-				+0.1
3,846,187	-				+1.2
3,846,241	-				-0.1
3,846,294	+				-0.4
3,846,295	-				+0.2
3,846,312	+				-0.5
3,846,312	+				+1.6
3,846,312	+				-0.9
3,846,313	-				-0.6
3,846,313	-				+2.6
3,846,313	-				-1.2
3,846,382	+				+0.6
3,846,382	+				+0.4
3,846,382	+				-0.2
3,846,383	-				-1.2
3,846,383	-				+1.6
3,846,383	-				-0.2
3,846,383	-				+0.1
3,846,409	+		IAI47_18085	0.11	+1.3
3,846,409	+		IAI47_18085	0.11	+0.0
3,846,409	+		IAI47_18085	0.11	+1.3
3,846,409	+		IAI47_18085	0.11	+0.6
3,846,410	-		IAI47_18085	0.11	+1.7
3,846,410	-		IAI47_18085	0.11	-0.6
3,846,410	-		IAI47_18085	0.11	+1.6
3,846,410	-		IAI47_18085	0.11	-1.4
3,846,427	+		IAI47_18085	0.12	+0.5
3,846,427	+		IAI47_18085	0.12	+0.6
3,846,427	+		IAI47_18085	0.12	+0.2
3,846,427	+		IAI47_18085	0.12	+0.1
3,846,427	+		IAI47_18085	0.12	+0.1
3,846,428	-		IAI47_18085	0.12	+0.6
3,846,428	-		IAI47_18085	0.12	-0.3
3,846,428	-		IAI47_18085	0.12	-0.4
3,846,477	-		IAI47_18085	0.14	-0.1
3,846,492	+		IAI47_18085	0.15	+0.8
3,846,493	-		IAI47_18085	0.15	-1.4
3,846,493	-		IAI47_18085	0.15	-1.6
3,846,538	+		IAI47_18085	0.18	-2.2
3,846,538	+		IAI47_18085	0.18	+1.2
3,846,538	+		IAI47_18085	0.18	-2.1
3,846,539	-		IAI47_18085	0.18	+4.4
3,846,539	-		IAI47_18085	0.18	-0.2
3,846,540	+		IAI47_18085	0.18	-0.2
3,846,541	-		IAI47_18085	0.18	-0.3
3,846,541	-		IAI47_18085	0.18	-1.1
3,846,541	-		IAI47_18085	0.18	-0.8
3,846,643	+		IAI47_18085	0.23	-0.5
3,846,644	-		IAI47_18085	0.23	+1.7
3,846,644	-		IAI47_18085	0.23	-1.9
3,846,644	-		IAI47_18085	0.23	-3.7
3,846,644	-		IAI47_18085	0.23	-0.7
3,846,681	+		IAI47_18085	0.25	-0.6
3,846,825	+		IAI47_18085	0.33	+0.2
3,846,825	+		IAI47_18085	0.33	+0.2
3,846,825	+		IAI47_18085	0.33	-0.6
3,846,825	+		IAI47_18085	0.33	-0.1
3,846,826	-		IAI47_18085	0.33	+0.9
3,846,826	-		IAI47_18085	0.33	-0.1
3,846,872	+		IAI47_18085	0.35	+0.3
3,846,872	+		IAI47_18085	0.35	+0.3
3,846,872	+		IAI47_18085	0.35	+0.4
3,846,872	+		IAI47_18085	0.35	-0.8
3,846,872	+		IAI47_18085	0.35	-1.2
3,846,872	+		IAI47_18085	0.35	-0.7
3,846,872	+		IAI47_18085	0.35	+0.3
3,846,872	+		IAI47_18085	0.35	+2.6
3,846,872	+		IAI47_18085	0.35	-1.2
3,846,873	-		IAI47_18085	0.35	+2.1
3,846,892	-		IAI47_18085	0.36	-0.6
3,846,892	-		IAI47_18085	0.36	+0.3
3,846,912	+		IAI47_18085	0.37	+0.0
3,846,912	+		IAI47_18085	0.37	+0.5
3,846,912	+		IAI47_18085	0.37	-0.4
3,846,913	-		IAI47_18085	0.37	+1.1
3,846,913	-		IAI47_18085	0.37	-1.2
3,846,913	-		IAI47_18085	0.37	-1.7
3,846,913	-		IAI47_18085	0.37	-1.3
3,846,985	-		IAI47_18085	0.41	+0.4
3,847,012	+		IAI47_18085	0.42	-1.8
3,847,012	+		IAI47_18085	0.42	-0.5
3,847,012	+		IAI47_18085	0.42	+1.8
3,847,013	-		IAI47_18085	0.43	+1.5
3,847,013	-		IAI47_18085	0.43	-1.7
3,847,014	+		IAI47_18085	0.43	-0.4
3,847,014	+		IAI47_18085	0.43	+0.9
3,847,014	+		IAI47_18085	0.43	+1.6
3,847,014	+		IAI47_18085	0.43	+0.0
3,847,015	-		IAI47_18085	0.43	+1.0
3,847,015	-		IAI47_18085	0.43	-2.4
3,847,015	-		IAI47_18085	0.43	-0.6
3,847,015	-		IAI47_18085	0.43	+0.1
3,847,015	-		IAI47_18085	0.43	-2.4
3,847,015	-		IAI47_18085	0.43	-0.3
3,847,015	-		IAI47_18085	0.43	+0.3
3,847,059	+		IAI47_18085	0.45	+1.1
3,847,060	-		IAI47_18085	0.45	+0.9
3,847,060	-		IAI47_18085	0.45	+2.0
3,847,065	+		IAI47_18085	0.45	-1.8
3,847,065	+		IAI47_18085	0.45	+0.0
3,847,066	-		IAI47_18085	0.45	+1.0
3,847,066	-		IAI47_18085	0.45	-1.8
3,847,066	-		IAI47_18085	0.45	-2.7
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