Strain Fitness in Pantoea sp. MT58 around IAI47_06840

Experiment: Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
1,427,649	-		IAI47_06835	0.44	-2.2
1,427,764	+		IAI47_06835	0.54	+0.4
1,427,764	+		IAI47_06835	0.54	+0.4
1,427,821	+		IAI47_06835	0.58	-0.7
1,427,822	-		IAI47_06835	0.58	+1.4
1,427,822	-		IAI47_06835	0.58	+1.8
1,427,852	-		IAI47_06835	0.61	+1.0
1,427,852	-		IAI47_06835	0.61	+1.8
1,427,852	-		IAI47_06835	0.61	-2.1
1,427,852	-		IAI47_06835	0.61	-1.6
1,427,852	-		IAI47_06835	0.61	+0.2
1,427,923	+		IAI47_06835	0.67	+0.9
1,427,923	+		IAI47_06835	0.67	+2.0
1,427,924	-		IAI47_06835	0.67	+2.4
1,427,924	-		IAI47_06835	0.67	-2.5
1,427,968	+		IAI47_06835	0.70	-0.8
1,427,968	+		IAI47_06835	0.70	-1.0
1,427,968	+		IAI47_06835	0.70	-0.2
1,427,968	+		IAI47_06835	0.70	+0.0
1,427,969	-		IAI47_06835	0.71	-1.7
1,427,969	-		IAI47_06835	0.71	+0.9
1,427,969	-		IAI47_06835	0.71	-0.6
1,427,969	-		IAI47_06835	0.71	-1.7
1,427,969	-		IAI47_06835	0.71	-2.0
1,428,010	+		IAI47_06835	0.74	+0.3
1,428,020	+		IAI47_06835	0.75	+0.0
1,428,021	-		IAI47_06835	0.75	+0.9
1,428,021	-		IAI47_06835	0.75	-1.6
1,428,021	-		IAI47_06835	0.75	-0.1
1,428,032	+		IAI47_06835	0.76	+0.8
1,428,033	-		IAI47_06835	0.76	+0.5
1,428,033	-		IAI47_06835	0.76	+0.6
1,428,041	+		IAI47_06835	0.76	-1.2
1,428,057	-		IAI47_06835	0.78	+2.4
1,428,071	+		IAI47_06835	0.79	-1.4
1,428,103	+		IAI47_06835	0.82	+1.1
1,428,115	+		IAI47_06835	0.83	+1.3
1,428,121	+		IAI47_06835	0.83	-1.1
1,428,122	-		IAI47_06835	0.83	+2.1
1,428,122	-		IAI47_06835	0.83	-1.8
1,428,122	-		IAI47_06835	0.83	-0.6
1,428,122	-		IAI47_06835	0.83	+0.2
1,428,131	+		IAI47_06835	0.84	+2.4
1,428,131	+		IAI47_06835	0.84	-1.7
1,428,131	+		IAI47_06835	0.84	+1.0
1,428,131	+		IAI47_06835	0.84	+0.0
1,428,132	-		IAI47_06835	0.84	+0.3
1,428,132	-		IAI47_06835	0.84	+0.2
1,428,205	-				+1.3
1,428,297	+				-1.8
1,428,297	+				-1.2
1,428,298	-				-0.8
1,428,298	-				+0.8
1,428,303	+				+0.5
1,428,303	+				-0.0
1,428,304	-				-1.4
1,428,315	-				+0.8
1,428,450	+				-0.6
1,428,451	-				+1.2
1,428,451	-				+1.2
1,428,451	-				-1.2
1,428,451	-				+0.7
1,428,476	+				-1.8
1,428,477	-				-0.2
1,428,501	+				-0.8
1,428,501	+				+3.4
1,428,501	+				+0.3
1,428,501	+				+0.8
1,428,501	+				-2.1
1,428,502	-				-2.2
1,428,502	-				-1.0
1,428,571	+				-0.2
1,428,571	+				-0.1
1,428,571	+				-0.3
1,428,633	+		IAI47_06840	0.11	+0.6
1,428,634	-		IAI47_06840	0.11	+0.2
1,428,783	+		IAI47_06840	0.28	+0.6
1,428,783	+		IAI47_06840	0.28	-0.6
1,428,783	+		IAI47_06840	0.28	+0.5
1,428,784	-		IAI47_06840	0.28	-2.9
1,428,834	+		IAI47_06840	0.34	+1.6
1,428,834	+		IAI47_06840	0.34	+0.4
1,428,834	+		IAI47_06840	0.34	+2.4
1,428,834	+		IAI47_06840	0.34	+1.2
1,428,834	+		IAI47_06840	0.34	+1.2
1,428,834	+		IAI47_06840	0.34	+1.2
1,428,835	-		IAI47_06840	0.34	-0.8
1,428,835	-		IAI47_06840	0.34	-0.3
1,428,840	+		IAI47_06840	0.34	-1.2
1,428,840	+		IAI47_06840	0.34	-0.2
1,428,841	-		IAI47_06840	0.34	+0.8
1,428,841	-		IAI47_06840	0.34	+0.5
1,428,841	-		IAI47_06840	0.34	-0.8
1,428,841	-		IAI47_06840	0.34	-0.4
1,428,898	-		IAI47_06840	0.41	-1.9
1,428,912	+		IAI47_06840	0.42	-1.1
1,428,941	+		IAI47_06840	0.45	+1.0
1,428,942	-		IAI47_06840	0.46	+1.8
1,429,023	+		IAI47_06840	0.55	+0.6
1,429,023	+		IAI47_06840	0.55	+1.3
1,429,024	-		IAI47_06840	0.55	+1.7
1,429,031	+		IAI47_06840	0.55	-1.7
1,429,031	+		IAI47_06840	0.55	+0.2
1,429,032	-		IAI47_06840	0.56	-0.0
1,429,093	+		IAI47_06840	0.62	+0.8
1,429,094	-		IAI47_06840	0.62	+2.4
1,429,094	-		IAI47_06840	0.62	-0.8
1,429,246	+		IAI47_06840	0.79	+0.1
1,429,246	+		IAI47_06840	0.79	-0.3
1,429,246	+		IAI47_06840	0.79	-1.2
1,429,286	+		IAI47_06840	0.84	-1.6
1,429,286	+		IAI47_06840	0.84	+1.6
1,429,287	-		IAI47_06840	0.84	+1.3
1,429,287	-		IAI47_06840	0.84	+2.6
1,429,287	-		IAI47_06840	0.84	+0.1
1,429,287	-		IAI47_06840	0.84	-2.3
1,429,287	-		IAI47_06840	0.84	+1.2
1,429,287	-		IAI47_06840	0.84	+0.2
1,429,356	+				+0.2
1,429,356	+				+2.4
1,429,357	-				+1.8
1,429,409	-				-2.4
1,429,422	+				-0.4
1,429,422	+				+0.7
1,429,423	-				-1.2
1,429,426	-				-0.3
1,429,451	+				+1.0
1,429,451	+				-0.6
1,429,451	+				+0.3
1,429,451	+				-0.8
1,429,451	+				-1.2
1,429,451	+				-1.6
1,429,452	-				+1.1
1,429,458	+				-0.0
1,429,458	+				+1.1
1,429,458	+				-1.4
1,429,458	+				-1.7
1,429,458	+				+1.0
1,429,458	+				+0.7
1,429,459	-				-1.8
1,429,459	-				-0.6
1,429,459	-				+1.0
1,429,459	-				+0.7
1,429,459	-				-0.2
1,429,472	+				-0.0
1,429,472	+				+1.4
1,429,472	+				-0.9
1,429,473	-				-1.2
1,429,473	-				-3.6
1,429,474	+				+2.1
1,429,474	+				-0.6
1,429,474	+				-0.4
1,429,474	+				+2.2
1,429,475	-				+0.2
1,429,479	+				+0.1
1,429,479	+				+0.2
1,429,479	+				+0.5
1,429,479	+				+0.9
1,429,479	+				-0.2
1,429,479	+				+1.2
1,429,479	+				+2.0
1,429,479	+				-1.2
1,429,479	+				+0.8
1,429,480	-				+0.4
1,429,480	-				+1.0
1,429,480	-				-0.5
1,429,480	-				+1.2
1,429,480	-				-0.0
1,429,480	-				+2.1
1,429,480	-				+0.8
1,429,480	-				+0.4
1,429,480	-				-3.0
1,429,480	-				-0.3
1,429,480	-				-0.2
1,429,480	-				+1.6
1,429,480	-				-0.6
1,429,480	-				+0.3
1,429,480	-				+0.3
1,429,492	+				+0.3
1,429,547	+				+0.6
1,429,567	-				+0.7
1,429,567	-				-0.2
1,429,567	-				-0.4
1,429,585	+				+1.4
1,429,586	-				-2.2
1,429,592	+				-1.2
1,429,592	+				+0.7
1,429,592	+				+0.6
1,429,593	-				-0.6
1,429,593	-				+1.6
1,429,593	-				-0.6
1,429,593	-				+1.4
1,429,608	+				-2.2
1,429,608	+				+0.2
1,429,608	+				+0.2
1,429,608	+				+1.5
1,429,609	-				+1.7
1,429,609	-				+0.4
1,429,610	+				-1.2
1,429,610	+				+0.9
1,429,610	+				+0.8
1,429,610	+				-1.2
1,429,610	+				+0.8
1,429,610	+				-1.4
1,429,611	-				+0.5
1,429,611	-				+1.6
1,429,611	-				+1.4
1,429,611	-				+0.2
1,429,672	+				-1.8
1,429,673	-				-0.2
1,429,680	+				-1.7
1,429,680	+				+0.4
1,429,680	+				-1.2
1,429,680	+				+1.2
1,429,681	-				-1.0
1,429,681	-				+1.3
1,429,681	-				+3.1
1,429,681	-				-1.6
1,429,712	-				-1.0
1,429,887	+		IAI47_06845	0.17	-2.9
1,429,888	-		IAI47_06845	0.17	-1.1
1,429,888	-		IAI47_06845	0.17	+0.2
1,429,888	-		IAI47_06845	0.17	+1.1
1,429,939	-		IAI47_06845	0.21	-1.2
1,429,988	+		IAI47_06845	0.24	+1.8
1,429,997	+		IAI47_06845	0.25	-1.2
1,430,034	+		IAI47_06845	0.27	+1.8
1,430,034	+		IAI47_06845	0.27	-2.0
1,430,123	+		IAI47_06845	0.34	-1.7
1,430,124	-		IAI47_06845	0.34	+1.4
1,430,147	+		IAI47_06845	0.36	-0.6
1,430,147	+		IAI47_06845	0.36	+1.3
1,430,147	+		IAI47_06845	0.36	+1.8
1,430,147	+		IAI47_06845	0.36	+2.1
1,430,148	-		IAI47_06845	0.36	-0.4
1,430,150	+		IAI47_06845	0.36	-0.8
1,430,150	+		IAI47_06845	0.36	-0.7
1,430,150	+		IAI47_06845	0.36	+0.0
1,430,150	+		IAI47_06845	0.36	-1.8
1,430,150	+		IAI47_06845	0.36	-0.0
1,430,151	-		IAI47_06845	0.36	+0.5
1,430,151	-		IAI47_06845	0.36	-2.9
1,430,151	-		IAI47_06845	0.36	-0.6
1,430,151	-		IAI47_06845	0.36	-0.0
1,430,151	-		IAI47_06845	0.36	+0.2
1,430,153	+		IAI47_06845	0.36	+1.0
1,430,153	+		IAI47_06845	0.36	+2.5
1,430,153	+		IAI47_06845	0.36	+1.2
1,430,153	+		IAI47_06845	0.36	-1.5
1,430,154	-		IAI47_06845	0.36	-0.4
1,430,154	-		IAI47_06845	0.36	+1.0
1,430,154	-		IAI47_06845	0.36	-0.6
1,430,154	-		IAI47_06845	0.36	+2.6
1,430,250	+		IAI47_06845	0.43	+1.6
1,430,251	-		IAI47_06845	0.43	-0.9
1,430,251	-		IAI47_06845	0.43	-2.6
1,430,251	-		IAI47_06845	0.43	+0.4
1,430,252	+		IAI47_06845	0.43	-0.4
1,430,252	+		IAI47_06845	0.43	+2.2
1,430,252	+		IAI47_06845	0.43	+1.5
1,430,252	+		IAI47_06845	0.43	-1.7
1,430,252	+		IAI47_06845	0.43	+0.4
1,430,252	+		IAI47_06845	0.43	-1.9
1,430,252	+		IAI47_06845	0.43	-0.7
1,430,252	+		IAI47_06845	0.43	-0.1
1,430,252	+		IAI47_06845	0.43	-2.8
1,430,252	+		IAI47_06845	0.43	-0.6
1,430,252	+		IAI47_06845	0.43	+0.8
1,430,252	+		IAI47_06845	0.43	-0.9
1,430,252	+		IAI47_06845	0.43	-0.3
1,430,252	+		IAI47_06845	0.43	-0.4
1,430,253	-		IAI47_06845	0.43	+1.8
1,430,253	-		IAI47_06845	0.43	-0.6
1,430,253	-		IAI47_06845	0.43	-2.1
1,430,253	-		IAI47_06845	0.43	+0.1
1,430,253	-		IAI47_06845	0.43	-1.8
1,430,253	-		IAI47_06845	0.43	+1.3
1,430,253	-		IAI47_06845	0.43	+0.6
1,430,253	-		IAI47_06845	0.43	-1.8
1,430,253	-		IAI47_06845	0.43	-1.7
1,430,253	-		IAI47_06845	0.43	+2.2
1,430,253	-		IAI47_06845	0.43	+0.1
1,430,253	-		IAI47_06845	0.43	-1.9
1,430,253	-		IAI47_06845	0.43	+1.5
1,430,253	-		IAI47_06845	0.43	-1.7
1,430,331	+		IAI47_06845	0.49	-2.2
1,430,332	-		IAI47_06845	0.49	-1.4
1,430,397	+		IAI47_06845	0.54	+1.0
1,430,397	+		IAI47_06845	0.54	+0.4
1,430,398	-		IAI47_06845	0.54	-2.0