Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS27050 and BWI76_RS27055 overlap by 59 nucleotides BWI76_RS27055 and BWI76_RS27060 are separated by 80 nucleotides BWI76_RS27060 and BWI76_RS27065 are separated by 173 nucleotides
BWI76_RS27050: BWI76_RS27050 - hypothetical protein, at 5,613,316 to 5,614,143
_RS27050
BWI76_RS27055: BWI76_RS27055 - hypothetical protein, at 5,614,085 to 5,614,378
_RS27055
BWI76_RS27060: BWI76_RS27060 - alpha-amylase, at 5,614,459 to 5,616,492
_RS27060
BWI76_RS27065: BWI76_RS27065 - valine--pyruvate transaminase, at 5,616,666 to 5,617,925
_RS27065
Position (kb) 5614
5615
5616
5617 Strain fitness (log2 ratio) -1
0
1
2 at 5613.679 kb on - strand, within BWI76_RS27050 at 5613.698 kb on + strand, within BWI76_RS27050 at 5613.874 kb on + strand, within BWI76_RS27050 at 5613.877 kb on - strand, within BWI76_RS27050 at 5614.122 kb on - strand at 5614.385 kb on - strand at 5614.449 kb on + strand at 5614.500 kb on + strand at 5614.500 kb on + strand at 5614.657 kb on - strand at 5614.657 kb on - strand at 5614.672 kb on - strand, within BWI76_RS27060 at 5614.675 kb on - strand, within BWI76_RS27060 at 5614.762 kb on - strand, within BWI76_RS27060 at 5614.850 kb on + strand, within BWI76_RS27060 at 5614.858 kb on - strand, within BWI76_RS27060 at 5615.031 kb on + strand, within BWI76_RS27060 at 5615.205 kb on - strand, within BWI76_RS27060 at 5615.266 kb on + strand, within BWI76_RS27060 at 5615.298 kb on - strand, within BWI76_RS27060 at 5615.303 kb on - strand, within BWI76_RS27060 at 5615.313 kb on - strand, within BWI76_RS27060 at 5615.419 kb on + strand, within BWI76_RS27060 at 5615.419 kb on + strand, within BWI76_RS27060 at 5615.447 kb on - strand, within BWI76_RS27060 at 5615.530 kb on + strand, within BWI76_RS27060 at 5615.532 kb on - strand, within BWI76_RS27060 at 5615.540 kb on + strand, within BWI76_RS27060 at 5615.700 kb on + strand, within BWI76_RS27060 at 5615.710 kb on - strand, within BWI76_RS27060 at 5615.760 kb on + strand, within BWI76_RS27060 at 5615.971 kb on + strand, within BWI76_RS27060 at 5616.033 kb on - strand, within BWI76_RS27060 at 5616.061 kb on + strand, within BWI76_RS27060 at 5616.155 kb on + strand, within BWI76_RS27060 at 5616.159 kb on - strand, within BWI76_RS27060 at 5616.215 kb on + strand, within BWI76_RS27060 at 5616.220 kb on + strand, within BWI76_RS27060 at 5616.220 kb on + strand, within BWI76_RS27060 at 5616.287 kb on - strand, within BWI76_RS27060 at 5616.346 kb on - strand at 5616.366 kb on + strand at 5616.427 kb on + strand at 5616.479 kb on - strand at 5616.481 kb on + strand at 5616.628 kb on - strand at 5616.842 kb on - strand, within BWI76_RS27065 at 5616.887 kb on + strand, within BWI76_RS27065 at 5616.902 kb on + strand, within BWI76_RS27065 at 5616.909 kb on - strand, within BWI76_RS27065 at 5617.003 kb on + strand, within BWI76_RS27065 at 5617.140 kb on - strand, within BWI76_RS27065 at 5617.234 kb on + strand, within BWI76_RS27065 at 5617.350 kb on + strand, within BWI76_RS27065
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 5,613,679 - BWI76_RS27050 0.44 +0.0 5,613,698 + BWI76_RS27050 0.46 -0.4 5,613,874 + BWI76_RS27050 0.67 -0.1 5,613,877 - BWI76_RS27050 0.68 +0.7 5,614,122 - -0.3 5,614,385 - +0.2 5,614,449 + +0.9 5,614,500 + -0.6 5,614,500 + -1.3 5,614,657 - -0.3 5,614,657 - -0.7 5,614,672 - BWI76_RS27060 0.10 -0.4 5,614,675 - BWI76_RS27060 0.11 -0.6 5,614,762 - BWI76_RS27060 0.15 -0.2 5,614,850 + BWI76_RS27060 0.19 +0.4 5,614,858 - BWI76_RS27060 0.20 -0.5 5,615,031 + BWI76_RS27060 0.28 +1.3 5,615,205 - BWI76_RS27060 0.37 +1.3 5,615,266 + BWI76_RS27060 0.40 -0.3 5,615,298 - BWI76_RS27060 0.41 -0.6 5,615,303 - BWI76_RS27060 0.41 +0.9 5,615,313 - BWI76_RS27060 0.42 +0.3 5,615,419 + BWI76_RS27060 0.47 +0.0 5,615,419 + BWI76_RS27060 0.47 -0.0 5,615,447 - BWI76_RS27060 0.49 +0.2 5,615,530 + BWI76_RS27060 0.53 -0.3 5,615,532 - BWI76_RS27060 0.53 +0.7 5,615,540 + BWI76_RS27060 0.53 -0.7 5,615,700 + BWI76_RS27060 0.61 +0.1 5,615,710 - BWI76_RS27060 0.62 -0.1 5,615,760 + BWI76_RS27060 0.64 +0.3 5,615,971 + BWI76_RS27060 0.74 +0.0 5,616,033 - BWI76_RS27060 0.77 +0.2 5,616,061 + BWI76_RS27060 0.79 +0.5 5,616,155 + BWI76_RS27060 0.83 -0.2 5,616,159 - BWI76_RS27060 0.84 -0.3 5,616,215 + BWI76_RS27060 0.86 +2.1 5,616,220 + BWI76_RS27060 0.87 -0.3 5,616,220 + BWI76_RS27060 0.87 -1.7 5,616,287 - BWI76_RS27060 0.90 -0.1 5,616,346 - +0.1 5,616,366 + -0.6 5,616,427 + -0.2 5,616,479 - +0.2 5,616,481 + -0.5 5,616,628 - +0.7 5,616,842 - BWI76_RS27065 0.14 -0.0 5,616,887 + BWI76_RS27065 0.18 +0.2 5,616,902 + BWI76_RS27065 0.19 -1.5 5,616,909 - BWI76_RS27065 0.19 -0.1 5,617,003 + BWI76_RS27065 0.27 -0.3 5,617,140 - BWI76_RS27065 0.38 -0.3 5,617,234 + BWI76_RS27065 0.45 -0.8 5,617,350 + BWI76_RS27065 0.54 -0.7
Or see this region's nucleotide sequence