Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS26195

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS26190 and BWI76_RS26195 are separated by 52 nucleotidesBWI76_RS26195 and BWI76_RS26200 are separated by 15 nucleotides BWI76_RS26190: BWI76_RS26190 - glycerol-3-phosphate dehydrogenase, at 5,415,431 to 5,416,939 _RS26190 BWI76_RS26195: BWI76_RS26195 - glycogen phosphorylase, at 5,416,992 to 5,419,439 _RS26195 BWI76_RS26200: BWI76_RS26200 - starch synthase, at 5,419,455 to 5,420,888 _RS26200 Position (kb) 5416 5417 5418 5419 5420Strain fitness (log2 ratio) -3 -2 -1 0 1at 5416.162 kb on + strand, within BWI76_RS26190at 5416.170 kb on - strand, within BWI76_RS26190at 5416.363 kb on + strand, within BWI76_RS26190at 5416.492 kb on + strand, within BWI76_RS26190at 5416.511 kb on - strand, within BWI76_RS26190at 5416.568 kb on - strand, within BWI76_RS26190at 5416.871 kb on - strandat 5417.029 kb on + strandat 5417.116 kb on + strandat 5417.116 kb on + strandat 5417.335 kb on + strand, within BWI76_RS26195at 5417.336 kb on + strand, within BWI76_RS26195at 5417.413 kb on - strand, within BWI76_RS26195at 5417.540 kb on + strand, within BWI76_RS26195at 5417.570 kb on - strand, within BWI76_RS26195at 5417.788 kb on + strand, within BWI76_RS26195at 5417.856 kb on - strand, within BWI76_RS26195at 5417.879 kb on + strand, within BWI76_RS26195at 5417.946 kb on + strand, within BWI76_RS26195at 5418.130 kb on - strand, within BWI76_RS26195at 5418.133 kb on + strand, within BWI76_RS26195at 5418.140 kb on + strand, within BWI76_RS26195at 5418.148 kb on - strand, within BWI76_RS26195at 5418.246 kb on + strand, within BWI76_RS26195at 5418.359 kb on + strand, within BWI76_RS26195at 5418.367 kb on - strand, within BWI76_RS26195at 5418.367 kb on - strand, within BWI76_RS26195at 5418.520 kb on + strand, within BWI76_RS26195at 5418.538 kb on - strand, within BWI76_RS26195at 5418.560 kb on - strand, within BWI76_RS26195at 5418.560 kb on - strand, within BWI76_RS26195at 5418.684 kb on + strand, within BWI76_RS26195at 5418.738 kb on + strand, within BWI76_RS26195at 5418.757 kb on - strand, within BWI76_RS26195at 5419.143 kb on + strand, within BWI76_RS26195at 5419.187 kb on + strand, within BWI76_RS26195at 5419.195 kb on - strandat 5419.272 kb on + strandat 5419.304 kb on + strandat 5419.378 kb on + strandat 5419.408 kb on - strandat 5420.112 kb on - strand, within BWI76_RS26200at 5420.273 kb on - strand, within BWI76_RS26200at 5420.275 kb on + strand, within BWI76_RS26200at 5420.280 kb on + strand, within BWI76_RS26200at 5420.283 kb on - strand, within BWI76_RS26200

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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5,416,162 + BWI76_RS26190 0.48 -1.5
5,416,170 - BWI76_RS26190 0.49 -1.1
5,416,363 + BWI76_RS26190 0.62 -0.8
5,416,492 + BWI76_RS26190 0.70 -0.6
5,416,511 - BWI76_RS26190 0.72 -0.8
5,416,568 - BWI76_RS26190 0.75 +0.4
5,416,871 - -2.3
5,417,029 + +1.0
5,417,116 + +0.5
5,417,116 + +0.1
5,417,335 + BWI76_RS26195 0.14 +0.0
5,417,336 + BWI76_RS26195 0.14 -0.6
5,417,413 - BWI76_RS26195 0.17 -0.4
5,417,540 + BWI76_RS26195 0.22 -0.6
5,417,570 - BWI76_RS26195 0.24 -1.9
5,417,788 + BWI76_RS26195 0.33 -0.1
5,417,856 - BWI76_RS26195 0.35 -0.3
5,417,879 + BWI76_RS26195 0.36 -0.4
5,417,946 + BWI76_RS26195 0.39 -3.5
5,418,130 - BWI76_RS26195 0.46 -0.3
5,418,133 + BWI76_RS26195 0.47 -0.2
5,418,140 + BWI76_RS26195 0.47 +0.6
5,418,148 - BWI76_RS26195 0.47 -0.0
5,418,246 + BWI76_RS26195 0.51 -0.2
5,418,359 + BWI76_RS26195 0.56 +1.0
5,418,367 - BWI76_RS26195 0.56 +0.2
5,418,367 - BWI76_RS26195 0.56 +0.4
5,418,520 + BWI76_RS26195 0.62 +0.1
5,418,538 - BWI76_RS26195 0.63 +0.9
5,418,560 - BWI76_RS26195 0.64 -0.1
5,418,560 - BWI76_RS26195 0.64 -0.1
5,418,684 + BWI76_RS26195 0.69 +0.1
5,418,738 + BWI76_RS26195 0.71 -1.3
5,418,757 - BWI76_RS26195 0.72 +0.5
5,419,143 + BWI76_RS26195 0.88 -0.3
5,419,187 + BWI76_RS26195 0.90 -0.2
5,419,195 - -0.1
5,419,272 + -0.3
5,419,304 + +0.2
5,419,378 + -0.6
5,419,408 - +0.4
5,420,112 - BWI76_RS26200 0.46 -0.1
5,420,273 - BWI76_RS26200 0.57 +0.0
5,420,275 + BWI76_RS26200 0.57 +0.6
5,420,280 + BWI76_RS26200 0.58 -0.6
5,420,283 - BWI76_RS26200 0.58 +0.0

Or see this region's nucleotide sequence