Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS26170

Experiment: acetate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS26165 and BWI76_RS26170 are separated by 619 nucleotidesBWI76_RS26170 and BWI76_RS26175 are separated by 168 nucleotidesBWI76_RS26175 and BWI76_RS26180 are separated by 19 nucleotides BWI76_RS26165: BWI76_RS26165 - Glycogen phosphorylase (EC 2.4.1.1) (from data), at 5,407,337 to 5,409,727 _RS26165 BWI76_RS26170: BWI76_RS26170 - transcriptional regulator MalT, at 5,410,347 to 5,413,052 _RS26170 BWI76_RS26175: BWI76_RS26175 - DeoR/GlpR family transcriptional regulator, at 5,413,221 to 5,413,979 _RS26175 BWI76_RS26180: BWI76_RS26180 - rhomboid family intramembrane serine protease GlpG, at 5,413,999 to 5,414,829 _RS26180 Position (kb) 5410 5411 5412 5413 5414Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5409.392 kb on + strand, within BWI76_RS26165at 5409.400 kb on - strand, within BWI76_RS26165at 5409.424 kb on + strand, within BWI76_RS26165at 5409.441 kb on - strand, within BWI76_RS26165at 5409.469 kb on + strand, within BWI76_RS26165at 5409.632 kb on - strandat 5409.642 kb on - strandat 5409.698 kb on - strandat 5409.758 kb on + strandat 5409.797 kb on + strandat 5409.804 kb on - strandat 5409.826 kb on - strandat 5409.840 kb on + strandat 5409.855 kb on + strandat 5409.863 kb on - strandat 5409.863 kb on - strandat 5409.917 kb on - strandat 5409.930 kb on - strandat 5409.931 kb on - strandat 5409.931 kb on - strandat 5409.956 kb on + strandat 5409.956 kb on - strandat 5410.035 kb on - strandat 5410.159 kb on - strandat 5410.159 kb on - strandat 5410.207 kb on - strandat 5410.207 kb on - strandat 5410.217 kb on + strandat 5410.269 kb on + strandat 5410.322 kb on + strandat 5410.322 kb on + strandat 5410.322 kb on + strandat 5410.322 kb on + strandat 5410.327 kb on + strandat 5410.330 kb on - strandat 5410.345 kb on - strandat 5410.347 kb on + strandat 5410.366 kb on - strandat 5410.366 kb on - strandat 5410.370 kb on - strandat 5410.371 kb on + strandat 5410.372 kb on + strandat 5410.381 kb on + strandat 5410.381 kb on + strandat 5410.381 kb on + strandat 5410.381 kb on + strandat 5410.381 kb on + strandat 5410.381 kb on + strandat 5410.381 kb on + strandat 5410.381 kb on + strandat 5410.381 kb on + strandat 5410.381 kb on + strandat 5410.381 kb on + strandat 5410.381 kb on + strandat 5410.381 kb on + strandat 5410.381 kb on + strandat 5410.381 kb on + strandat 5410.381 kb on + strandat 5410.381 kb on + strandat 5410.381 kb on + strandat 5410.381 kb on + strandat 5410.381 kb on + strandat 5410.381 kb on + strandat 5410.381 kb on + strandat 5410.381 kb on + strandat 5410.381 kb on + strandat 5410.381 kb on + strandat 5410.381 kb on + strandat 5410.381 kb on + strandat 5410.381 kb on + strandat 5410.381 kb on + strandat 5410.381 kb on + strandat 5410.381 kb on + strandat 5410.381 kb on + strandat 5410.381 kb on + strandat 5410.381 kb on + strandat 5410.381 kb on + strandat 5410.381 kb on + strandat 5410.381 kb on + strandat 5410.381 kb on + strandat 5410.381 kb on + strandat 5410.389 kb on - strandat 5410.389 kb on - strandat 5410.389 kb on - strandat 5410.389 kb on - strandat 5410.389 kb on - strandat 5410.389 kb on - strandat 5410.389 kb on - strandat 5410.389 kb on - strandat 5410.389 kb on - strandat 5410.389 kb on - strandat 5410.389 kb on - strandat 5410.389 kb on - strandat 5410.389 kb on - strandat 5410.389 kb on - strandat 5410.389 kb on - strandat 5410.389 kb on - strandat 5410.389 kb on - strandat 5410.389 kb on - strandat 5410.389 kb on - strandat 5410.389 kb on - strandat 5410.389 kb on - strandat 5410.389 kb on - strandat 5410.389 kb on - strandat 5410.389 kb on - strandat 5410.389 kb on - strandat 5410.389 kb on - strandat 5410.389 kb on - strandat 5410.389 kb on - strandat 5410.389 kb on - strandat 5410.389 kb on - strandat 5410.389 kb on - strandat 5410.389 kb on - strandat 5410.389 kb on - strandat 5410.389 kb on - strandat 5410.389 kb on - strandat 5410.389 kb on - strandat 5410.389 kb on - strandat 5410.389 kb on - strandat 5410.389 kb on - strandat 5410.389 kb on - strandat 5410.389 kb on - strandat 5410.389 kb on - strandat 5410.389 kb on - strandat 5410.390 kb on + strandat 5410.390 kb on + strandat 5410.390 kb on + strandat 5410.390 kb on + strandat 5410.391 kb on + strandat 5410.391 kb on + strandat 5410.391 kb on + strandat 5410.391 kb on + strandat 5410.391 kb on + strandat 5410.399 kb on - strandat 5410.410 kb on - strandat 5410.436 kb on + strandat 5410.452 kb on + strandat 5410.452 kb on + strandat 5410.460 kb on - strandat 5410.470 kb on - strandat 5410.475 kb on + strandat 5410.538 kb on + strandat 5410.545 kb on + strandat 5410.560 kb on - strandat 5410.596 kb on - strandat 5410.737 kb on + strand, within BWI76_RS26170at 5410.925 kb on + strand, within BWI76_RS26170at 5411.008 kb on - strand, within BWI76_RS26170at 5411.039 kb on + strand, within BWI76_RS26170at 5411.126 kb on + strand, within BWI76_RS26170at 5411.134 kb on - strand, within BWI76_RS26170at 5411.403 kb on + strand, within BWI76_RS26170at 5411.403 kb on + strand, within BWI76_RS26170at 5411.403 kb on + strand, within BWI76_RS26170at 5411.403 kb on + strand, within BWI76_RS26170at 5411.411 kb on - strand, within BWI76_RS26170at 5411.505 kb on - strand, within BWI76_RS26170at 5411.505 kb on - strand, within BWI76_RS26170at 5411.591 kb on + strand, within BWI76_RS26170at 5411.599 kb on - strand, within BWI76_RS26170at 5411.678 kb on - strand, within BWI76_RS26170at 5411.718 kb on - strand, within BWI76_RS26170at 5411.749 kb on - strand, within BWI76_RS26170at 5411.826 kb on - strand, within BWI76_RS26170at 5411.913 kb on + strand, within BWI76_RS26170at 5411.921 kb on - strand, within BWI76_RS26170at 5411.979 kb on - strand, within BWI76_RS26170at 5412.055 kb on + strand, within BWI76_RS26170at 5412.157 kb on + strand, within BWI76_RS26170at 5412.554 kb on + strand, within BWI76_RS26170at 5412.892 kb on - strandat 5413.077 kb on + strandat 5413.290 kb on + strandat 5413.290 kb on + strandat 5413.291 kb on + strandat 5413.300 kb on + strand, within BWI76_RS26175at 5413.423 kb on - strand, within BWI76_RS26175at 5413.439 kb on - strand, within BWI76_RS26175at 5413.514 kb on - strand, within BWI76_RS26175at 5413.786 kb on + strand, within BWI76_RS26175at 5413.805 kb on - strand, within BWI76_RS26175

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
remove
5,409,392 + BWI76_RS26165 0.86 -0.3
5,409,400 - BWI76_RS26165 0.86 +0.0
5,409,424 + BWI76_RS26165 0.87 -0.9
5,409,441 - BWI76_RS26165 0.88 +0.8
5,409,469 + BWI76_RS26165 0.89 -0.3
5,409,632 - -0.4
5,409,642 - -0.0
5,409,698 - +1.7
5,409,758 + -1.5
5,409,797 + +0.3
5,409,804 - +0.7
5,409,826 - -0.5
5,409,840 + +0.6
5,409,855 + +0.2
5,409,863 - +0.1
5,409,863 - -0.6
5,409,917 - +0.7
5,409,930 - -0.2
5,409,931 - -0.5
5,409,931 - +0.3
5,409,956 + -0.1
5,409,956 - -0.1
5,410,035 - +1.1
5,410,159 - -0.0
5,410,159 - +0.1
5,410,207 - +0.4
5,410,207 - +0.4
5,410,217 + -1.1
5,410,269 + -0.2
5,410,322 + +0.4
5,410,322 + +0.2
5,410,322 + +0.2
5,410,322 + -0.2
5,410,327 + -0.4
5,410,330 - -0.1
5,410,345 - +1.4
5,410,347 + +0.6
5,410,366 - +1.0
5,410,366 - -0.9
5,410,370 - +0.7
5,410,371 + +1.0
5,410,372 + -0.3
5,410,381 + -1.1
5,410,381 + +0.6
5,410,381 + +0.8
5,410,381 + -1.4
5,410,381 + -1.8
5,410,381 + -0.4
5,410,381 + -0.6
5,410,381 + +0.2
5,410,381 + -0.7
5,410,381 + -1.1
5,410,381 + +0.4
5,410,381 + -0.6
5,410,381 + -0.1
5,410,381 + +0.5
5,410,381 + -0.7
5,410,381 + +0.2
5,410,381 + -0.4
5,410,381 + +0.2
5,410,381 + -2.2
5,410,381 + +0.1
5,410,381 + -0.2
5,410,381 + +0.3
5,410,381 + +0.7
5,410,381 + -1.7
5,410,381 + -0.3
5,410,381 + +0.4
5,410,381 + +0.8
5,410,381 + -0.4
5,410,381 + +0.3
5,410,381 + +0.6
5,410,381 + -0.1
5,410,381 + -0.2
5,410,381 + -0.3
5,410,381 + +1.7
5,410,381 + -0.8
5,410,381 + -1.0
5,410,381 + +0.6
5,410,381 + +0.4
5,410,381 + +0.2
5,410,389 - +0.0
5,410,389 - +1.0
5,410,389 - -0.1
5,410,389 - +1.2
5,410,389 - +2.2
5,410,389 - +2.0
5,410,389 - -2.4
5,410,389 - +0.2
5,410,389 - +1.7
5,410,389 - -1.9
5,410,389 - +0.4
5,410,389 - +0.4
5,410,389 - -0.1
5,410,389 - +0.2
5,410,389 - +0.0
5,410,389 - -1.8
5,410,389 - +0.4
5,410,389 - +0.7
5,410,389 - +0.7
5,410,389 - +0.3
5,410,389 - +0.7
5,410,389 - +0.2
5,410,389 - +0.1
5,410,389 - +0.1
5,410,389 - +0.8
5,410,389 - +1.3
5,410,389 - +0.6
5,410,389 - -0.8
5,410,389 - +1.3
5,410,389 - +0.5
5,410,389 - -0.3
5,410,389 - +0.5
5,410,389 - -0.2
5,410,389 - +0.2
5,410,389 - +0.2
5,410,389 - -0.5
5,410,389 - +1.7
5,410,389 - +0.1
5,410,389 - +0.0
5,410,389 - -0.7
5,410,389 - +0.2
5,410,389 - -0.3
5,410,389 - +0.8
5,410,390 + -1.6
5,410,390 + +1.7
5,410,390 + -0.3
5,410,390 + -0.2
5,410,391 + +0.4
5,410,391 + -2.9
5,410,391 + +0.2
5,410,391 + -0.2
5,410,391 + +0.2
5,410,399 - +0.4
5,410,410 - +0.1
5,410,436 + -1.4
5,410,452 + -0.4
5,410,452 + +0.5
5,410,460 - +1.0
5,410,470 - -0.2
5,410,475 + +1.7
5,410,538 + -0.5
5,410,545 + +1.1
5,410,560 - +0.4
5,410,596 - -0.3
5,410,737 + BWI76_RS26170 0.14 -0.1
5,410,925 + BWI76_RS26170 0.21 -1.2
5,411,008 - BWI76_RS26170 0.24 -2.1
5,411,039 + BWI76_RS26170 0.26 -0.6
5,411,126 + BWI76_RS26170 0.29 +1.0
5,411,134 - BWI76_RS26170 0.29 -0.2
5,411,403 + BWI76_RS26170 0.39 +0.1
5,411,403 + BWI76_RS26170 0.39 +0.7
5,411,403 + BWI76_RS26170 0.39 +0.7
5,411,403 + BWI76_RS26170 0.39 -0.0
5,411,411 - BWI76_RS26170 0.39 +0.2
5,411,505 - BWI76_RS26170 0.43 -0.3
5,411,505 - BWI76_RS26170 0.43 +1.3
5,411,591 + BWI76_RS26170 0.46 +1.4
5,411,599 - BWI76_RS26170 0.46 +0.7
5,411,678 - BWI76_RS26170 0.49 +3.0
5,411,718 - BWI76_RS26170 0.51 +1.1
5,411,749 - BWI76_RS26170 0.52 +0.8
5,411,826 - BWI76_RS26170 0.55 +0.0
5,411,913 + BWI76_RS26170 0.58 -0.1
5,411,921 - BWI76_RS26170 0.58 +0.0
5,411,979 - BWI76_RS26170 0.60 +0.1
5,412,055 + BWI76_RS26170 0.63 +1.3
5,412,157 + BWI76_RS26170 0.67 -0.2
5,412,554 + BWI76_RS26170 0.82 -0.4
5,412,892 - +0.4
5,413,077 + +2.4
5,413,290 + -0.6
5,413,290 + +2.7
5,413,291 + -0.8
5,413,300 + BWI76_RS26175 0.10 -0.2
5,413,423 - BWI76_RS26175 0.27 -0.8
5,413,439 - BWI76_RS26175 0.29 -0.6
5,413,514 - BWI76_RS26175 0.39 +0.1
5,413,786 + BWI76_RS26175 0.74 -1.2
5,413,805 - BWI76_RS26175 0.77 -0.3

Or see this region's nucleotide sequence