Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS25410 and BWI76_RS25415 overlap by 29 nucleotides BWI76_RS25415 and BWI76_RS25420 are separated by 131 nucleotides BWI76_RS25420 and BWI76_RS25425 are separated by 412 nucleotides
BWI76_RS25410: BWI76_RS25410 - GntR family transcriptional regulator with, at 5,281,820 to 5,282,485
_RS25410
BWI76_RS25415: BWI76_RS25415 - GntR family transcriptional regulator, at 5,282,457 to 5,283,101
_RS25415
BWI76_RS25420: BWI76_RS25420 - malate dehydrogenase, at 5,283,233 to 5,284,171
_RS25420
BWI76_RS25425: BWI76_RS25425 - arginine repressor, at 5,284,584 to 5,285,054
_RS25425
Position (kb) 5283
5284
5285 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 5282.301 kb on - strand, within BWI76_RS25410 at 5282.347 kb on - strand, within BWI76_RS25410 at 5282.351 kb on - strand, within BWI76_RS25410 at 5282.365 kb on + strand at 5282.477 kb on - strand at 5282.493 kb on - strand at 5282.875 kb on + strand, within BWI76_RS25415 at 5283.028 kb on - strand, within BWI76_RS25415 at 5283.192 kb on - strand at 5283.383 kb on + strand, within BWI76_RS25420 at 5283.633 kb on + strand, within BWI76_RS25420 at 5283.826 kb on + strand, within BWI76_RS25420 at 5283.844 kb on - strand, within BWI76_RS25420 at 5283.856 kb on - strand, within BWI76_RS25420 at 5284.085 kb on + strand at 5284.092 kb on - strand at 5284.092 kb on - strand at 5284.106 kb on + strand at 5284.278 kb on + strand at 5284.299 kb on - strand at 5284.333 kb on - strand at 5284.335 kb on + strand at 5284.343 kb on - strand at 5284.343 kb on - strand at 5284.380 kb on + strand at 5284.634 kb on + strand, within BWI76_RS25425 at 5284.914 kb on + strand, within BWI76_RS25425 at 5285.025 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 5,282,301 - BWI76_RS25410 0.72 -0.0 5,282,347 - BWI76_RS25410 0.79 -0.4 5,282,351 - BWI76_RS25410 0.80 +0.4 5,282,365 + -0.3 5,282,477 - -0.3 5,282,493 - +2.5 5,282,875 + BWI76_RS25415 0.65 -0.9 5,283,028 - BWI76_RS25415 0.89 -0.6 5,283,192 - -0.2 5,283,383 + BWI76_RS25420 0.16 -1.3 5,283,633 + BWI76_RS25420 0.43 -2.8 5,283,826 + BWI76_RS25420 0.63 -2.5 5,283,844 - BWI76_RS25420 0.65 -4.3 5,283,856 - BWI76_RS25420 0.66 -5.8 5,284,085 + -6.2 5,284,092 - -3.0 5,284,092 - -3.4 5,284,106 + -4.1 5,284,278 + -1.8 5,284,299 - +0.7 5,284,333 - -0.2 5,284,335 + -0.7 5,284,343 - +0.7 5,284,343 - -1.0 5,284,380 + -2.6 5,284,634 + BWI76_RS25425 0.11 -1.2 5,284,914 + BWI76_RS25425 0.70 -0.9 5,285,025 + -1.2
Or see this region's nucleotide sequence