Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS25355

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS25345 and BWI76_RS25350 are separated by 15 nucleotidesBWI76_RS25350 and BWI76_RS25355 are separated by 219 nucleotidesBWI76_RS25355 and BWI76_RS25360 are separated by 190 nucleotidesBWI76_RS25360 and BWI76_RS25365 are separated by 172 nucleotides BWI76_RS25345: BWI76_RS25345 - 30S ribosomal protein S9, at 5,268,978 to 5,269,370 _RS25345 BWI76_RS25350: BWI76_RS25350 - 50S ribosomal protein L13, at 5,269,386 to 5,269,814 _RS25350 BWI76_RS25355: BWI76_RS25355 - cell division protein ZapE, at 5,270,034 to 5,271,167 _RS25355 BWI76_RS25360: BWI76_RS25360 - hypothetical protein, at 5,271,358 to 5,271,756 _RS25360 BWI76_RS25365: BWI76_RS25365 - serine endoprotease DegQ, at 5,271,929 to 5,273,296 _RS25365 Position (kb) 5270 5271 5272Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5269.977 kb on + strandat 5270.031 kb on + strandat 5270.186 kb on + strand, within BWI76_RS25355at 5270.294 kb on + strand, within BWI76_RS25355at 5270.490 kb on + strand, within BWI76_RS25355at 5270.654 kb on + strand, within BWI76_RS25355at 5270.654 kb on + strand, within BWI76_RS25355at 5270.807 kb on - strand, within BWI76_RS25355at 5270.817 kb on + strand, within BWI76_RS25355at 5270.942 kb on - strand, within BWI76_RS25355at 5270.942 kb on - strand, within BWI76_RS25355at 5271.148 kb on + strandat 5271.200 kb on - strandat 5271.230 kb on + strandat 5271.238 kb on - strandat 5271.811 kb on + strandat 5271.853 kb on - strandat 5271.916 kb on - strandat 5271.962 kb on + strandat 5271.969 kb on + strandat 5272.107 kb on - strand, within BWI76_RS25365

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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5,269,977 + -0.0
5,270,031 + +3.1
5,270,186 + BWI76_RS25355 0.13 -0.9
5,270,294 + BWI76_RS25355 0.23 -1.6
5,270,490 + BWI76_RS25355 0.40 -2.4
5,270,654 + BWI76_RS25355 0.55 -2.2
5,270,654 + BWI76_RS25355 0.55 -2.4
5,270,807 - BWI76_RS25355 0.68 -1.8
5,270,817 + BWI76_RS25355 0.69 -2.4
5,270,942 - BWI76_RS25355 0.80 -3.2
5,270,942 - BWI76_RS25355 0.80 -1.3
5,271,148 + -1.5
5,271,200 - +1.1
5,271,230 + -0.3
5,271,238 - +0.1
5,271,811 + -0.7
5,271,853 - +0.2
5,271,916 - -1.0
5,271,962 + +0.1
5,271,969 + -0.3
5,272,107 - BWI76_RS25365 0.13 +0.3

Or see this region's nucleotide sequence