Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS23810

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS23805 and BWI76_RS23810 are separated by 5 nucleotidesBWI76_RS23810 and BWI76_RS23815 are separated by 22 nucleotides BWI76_RS23805: BWI76_RS23805 - ssDNA exonuclease RecJ, at 4,969,297 to 4,971,030 _RS23805 BWI76_RS23810: BWI76_RS23810 - bifunctional protein-disulfide isomerase/oxidoreductase DsbC, at 4,971,036 to 4,971,749 _RS23810 BWI76_RS23815: BWI76_RS23815 - site-specific tyrosine recombinase XerD, at 4,971,772 to 4,972,668 _RS23815 Position (kb) 4971 4972Strain fitness (log2 ratio) -2 -1 0 1 2at 4970.039 kb on - strand, within BWI76_RS23805at 4970.088 kb on - strand, within BWI76_RS23805at 4970.259 kb on - strand, within BWI76_RS23805at 4970.285 kb on - strand, within BWI76_RS23805at 4970.504 kb on - strand, within BWI76_RS23805at 4970.575 kb on - strand, within BWI76_RS23805at 4970.635 kb on - strand, within BWI76_RS23805at 4970.820 kb on - strand, within BWI76_RS23805at 4970.866 kb on + strandat 4970.879 kb on - strandat 4970.879 kb on - strandat 4971.158 kb on + strand, within BWI76_RS23810at 4971.385 kb on - strand, within BWI76_RS23810at 4971.469 kb on + strandat 4971.702 kb on + strandat 4971.711 kb on - strandat 4971.838 kb on - strandat 4971.856 kb on + strandat 4971.972 kb on + strand, within BWI76_RS23815at 4972.185 kb on + strand, within BWI76_RS23815at 4972.742 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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4,970,039 - BWI76_RS23805 0.43 -0.5
4,970,088 - BWI76_RS23805 0.46 -0.9
4,970,259 - BWI76_RS23805 0.55 +2.7
4,970,285 - BWI76_RS23805 0.57 +0.3
4,970,504 - BWI76_RS23805 0.70 -0.6
4,970,575 - BWI76_RS23805 0.74 +0.2
4,970,635 - BWI76_RS23805 0.77 +0.1
4,970,820 - BWI76_RS23805 0.88 -0.2
4,970,866 + -1.0
4,970,879 - -0.0
4,970,879 - -0.7
4,971,158 + BWI76_RS23810 0.17 -1.2
4,971,385 - BWI76_RS23810 0.49 +0.1
4,971,469 + -0.3
4,971,702 + -1.3
4,971,711 - -2.3
4,971,838 - -1.5
4,971,856 + -1.9
4,971,972 + BWI76_RS23815 0.22 -0.9
4,972,185 + BWI76_RS23815 0.46 -2.5
4,972,742 + +0.0

Or see this region's nucleotide sequence