Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS16680

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS16675 and BWI76_RS16680 are separated by 149 nucleotidesBWI76_RS16680 and BWI76_RS16685 are separated by 42 nucleotides BWI76_RS16675: BWI76_RS16675 - ABC transporter, at 3,450,700 to 3,451,746 _RS16675 BWI76_RS16680: BWI76_RS16680 - ABC transporter substrate-binding protein, at 3,451,896 to 3,453,599 _RS16680 BWI76_RS16685: BWI76_RS16685 - peptide ABC transporter permease, at 3,453,642 to 3,454,601 _RS16685 Position (kb) 3451 3452 3453 3454Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3451.022 kb on + strand, within BWI76_RS16675at 3451.310 kb on + strand, within BWI76_RS16675at 3451.884 kb on - strandat 3452.448 kb on - strand, within BWI76_RS16680at 3452.687 kb on + strand, within BWI76_RS16680at 3452.963 kb on + strand, within BWI76_RS16680at 3453.141 kb on - strand, within BWI76_RS16680at 3453.176 kb on + strand, within BWI76_RS16680at 3453.767 kb on - strand, within BWI76_RS16685at 3454.365 kb on - strand, within BWI76_RS16685at 3454.377 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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3,451,022 + BWI76_RS16675 0.31 -1.0
3,451,310 + BWI76_RS16675 0.58 -2.9
3,451,884 - -0.6
3,452,448 - BWI76_RS16680 0.32 +1.9
3,452,687 + BWI76_RS16680 0.46 +0.5
3,452,963 + BWI76_RS16680 0.63 +0.6
3,453,141 - BWI76_RS16680 0.73 +0.1
3,453,176 + BWI76_RS16680 0.75 +0.8
3,453,767 - BWI76_RS16685 0.13 +0.2
3,454,365 - BWI76_RS16685 0.75 -0.4
3,454,377 - -0.5

Or see this region's nucleotide sequence