Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS16675

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS16665 and BWI76_RS16670 are separated by 22 nucleotidesBWI76_RS16670 and BWI76_RS16675 are separated by 62 nucleotidesBWI76_RS16675 and BWI76_RS16680 are separated by 149 nucleotides BWI76_RS16665: BWI76_RS16665 - ABC transporter permease, at 3,449,164 to 3,449,838 _RS16665 BWI76_RS16670: BWI76_RS16670 - NLPA lipoprotein, at 3,449,861 to 3,450,637 _RS16670 BWI76_RS16675: BWI76_RS16675 - ABC transporter, at 3,450,700 to 3,451,746 _RS16675 BWI76_RS16680: BWI76_RS16680 - ABC transporter substrate-binding protein, at 3,451,896 to 3,453,599 _RS16680 Position (kb) 3450 3451 3452Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3449.712 kb on - strand, within BWI76_RS16665at 3449.880 kb on + strandat 3450.033 kb on + strand, within BWI76_RS16670at 3450.041 kb on - strand, within BWI76_RS16670at 3450.124 kb on - strand, within BWI76_RS16670at 3450.255 kb on - strand, within BWI76_RS16670at 3450.465 kb on + strand, within BWI76_RS16670at 3450.581 kb on - strandat 3450.591 kb on + strandat 3450.761 kb on - strandat 3450.767 kb on - strandat 3451.022 kb on + strand, within BWI76_RS16675at 3451.310 kb on + strand, within BWI76_RS16675at 3451.884 kb on - strandat 3452.448 kb on - strand, within BWI76_RS16680at 3452.687 kb on + strand, within BWI76_RS16680

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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3,449,712 - BWI76_RS16665 0.81 -0.2
3,449,880 + -0.1
3,450,033 + BWI76_RS16670 0.22 -0.4
3,450,041 - BWI76_RS16670 0.23 -0.8
3,450,124 - BWI76_RS16670 0.34 -0.0
3,450,255 - BWI76_RS16670 0.51 +0.3
3,450,465 + BWI76_RS16670 0.78 -1.0
3,450,581 - +0.6
3,450,591 + -0.3
3,450,761 - +0.5
3,450,767 - -0.1
3,451,022 + BWI76_RS16675 0.31 -1.0
3,451,310 + BWI76_RS16675 0.58 -2.9
3,451,884 - -0.6
3,452,448 - BWI76_RS16680 0.32 +1.9
3,452,687 + BWI76_RS16680 0.46 +0.5

Or see this region's nucleotide sequence