Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS08425 and BWI76_RS08430 overlap by 1 nucleotides BWI76_RS08430 and BWI76_RS08435 are separated by 252 nucleotides
BWI76_RS08425: BWI76_RS08425 - succinyl-CoA ligase subunit beta, at 1,783,370 to 1,784,536
_RS08425
BWI76_RS08430: BWI76_RS08430 - succinate--CoA ligase subunit alpha, at 1,784,536 to 1,785,405
_RS08430
BWI76_RS08435: BWI76_RS08435 - AraC family transcriptional regulator, at 1,785,658 to 1,786,350
_RS08435
Position (kb)
1784
1785
1786 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1
2
3 at 1783.706 kb on + strand, within BWI76_RS08425 at 1784.119 kb on + strand, within BWI76_RS08425 at 1784.773 kb on + strand, within BWI76_RS08430 at 1784.811 kb on + strand, within BWI76_RS08430 at 1784.921 kb on + strand, within BWI76_RS08430 at 1784.921 kb on + strand, within BWI76_RS08430 at 1784.921 kb on + strand, within BWI76_RS08430 at 1785.273 kb on - strand, within BWI76_RS08430 at 1785.338 kb on - strand at 1785.345 kb on + strand at 1785.428 kb on - strand at 1785.437 kb on + strand at 1785.438 kb on + strand at 1785.438 kb on + strand at 1785.438 kb on + strand at 1785.438 kb on + strand at 1785.438 kb on + strand at 1785.438 kb on + strand at 1785.438 kb on + strand at 1785.438 kb on + strand at 1785.438 kb on + strand at 1785.438 kb on + strand at 1785.438 kb on + strand at 1785.438 kb on + strand at 1785.438 kb on + strand at 1785.438 kb on + strand at 1785.438 kb on + strand at 1785.438 kb on + strand at 1785.438 kb on + strand at 1785.438 kb on + strand at 1785.446 kb on - strand at 1785.446 kb on - strand at 1785.446 kb on - strand at 1785.446 kb on - strand at 1785.446 kb on - strand at 1785.446 kb on - strand at 1785.446 kb on - strand at 1785.446 kb on - strand at 1785.446 kb on - strand at 1785.446 kb on - strand at 1785.446 kb on - strand at 1785.446 kb on - strand at 1785.446 kb on - strand at 1785.446 kb on - strand at 1785.446 kb on - strand at 1785.446 kb on - strand at 1785.446 kb on - strand at 1785.453 kb on + strand at 1785.465 kb on + strand at 1785.500 kb on + strand at 1785.500 kb on + strand at 1785.500 kb on + strand at 1785.500 kb on + strand at 1785.500 kb on + strand at 1785.500 kb on + strand at 1785.500 kb on + strand at 1785.500 kb on + strand at 1785.500 kb on + strand at 1785.500 kb on + strand at 1785.500 kb on + strand at 1785.500 kb on + strand at 1785.500 kb on + strand at 1785.508 kb on - strand at 1785.508 kb on - strand at 1785.508 kb on - strand at 1785.508 kb on - strand at 1785.508 kb on - strand at 1785.508 kb on - strand at 1785.508 kb on - strand at 1785.508 kb on - strand at 1785.508 kb on - strand at 1785.510 kb on + strand at 1785.510 kb on + strand at 1785.510 kb on + strand at 1785.510 kb on + strand at 1785.518 kb on - strand at 1785.518 kb on - strand at 1785.518 kb on - strand at 1785.518 kb on - strand at 1785.518 kb on - strand at 1785.518 kb on - strand at 1785.523 kb on - strand at 1785.525 kb on + strand at 1785.525 kb on + strand at 1785.533 kb on + strand at 1785.533 kb on - strand at 1785.533 kb on - strand at 1785.533 kb on - strand at 1785.533 kb on - strand at 1785.533 kb on - strand at 1785.533 kb on - strand at 1785.533 kb on - strand at 1785.533 kb on - strand at 1785.533 kb on - strand at 1785.556 kb on + strand at 1785.659 kb on - strand at 1785.677 kb on - strand at 1785.682 kb on + strand at 1785.682 kb on + strand at 1785.690 kb on - strand at 1785.725 kb on + strand at 1785.730 kb on + strand, within BWI76_RS08435 at 1785.730 kb on + strand, within BWI76_RS08435 at 1785.730 kb on + strand, within BWI76_RS08435 at 1785.730 kb on + strand, within BWI76_RS08435 at 1785.733 kb on - strand, within BWI76_RS08435 at 1785.733 kb on - strand, within BWI76_RS08435 at 1785.736 kb on + strand, within BWI76_RS08435 at 1785.738 kb on - strand, within BWI76_RS08435 at 1785.738 kb on - strand, within BWI76_RS08435 at 1785.738 kb on - strand, within BWI76_RS08435 at 1785.738 kb on - strand, within BWI76_RS08435 at 1785.745 kb on - strand, within BWI76_RS08435 at 1785.772 kb on + strand, within BWI76_RS08435 at 1785.780 kb on - strand, within BWI76_RS08435 at 1785.796 kb on + strand, within BWI76_RS08435 at 1785.796 kb on + strand, within BWI76_RS08435 at 1785.796 kb on + strand, within BWI76_RS08435 at 1785.804 kb on - strand, within BWI76_RS08435 at 1785.804 kb on - strand, within BWI76_RS08435 at 1785.804 kb on - strand, within BWI76_RS08435 at 1785.804 kb on - strand, within BWI76_RS08435 at 1785.804 kb on - strand, within BWI76_RS08435 at 1785.804 kb on - strand, within BWI76_RS08435 at 1785.862 kb on - strand, within BWI76_RS08435 at 1786.032 kb on + strand, within BWI76_RS08435 at 1786.192 kb on + strand, within BWI76_RS08435 at 1786.201 kb on + strand at 1786.201 kb on + strand, within BWI76_RS08435 at 1786.201 kb on + strand, within BWI76_RS08435 at 1786.209 kb on - strand, within BWI76_RS08435 at 1786.211 kb on + strand, within BWI76_RS08435 at 1786.218 kb on + strand, within BWI76_RS08435 at 1786.223 kb on + strand, within BWI76_RS08435 at 1786.236 kb on + strand, within BWI76_RS08435 at 1786.236 kb on + strand, within BWI76_RS08435 at 1786.236 kb on + strand, within BWI76_RS08435 at 1786.244 kb on - strand, within BWI76_RS08435 at 1786.244 kb on - strand, within BWI76_RS08435 at 1786.272 kb on + strand, within BWI76_RS08435 at 1786.295 kb on + strand at 1786.295 kb on + strand at 1786.295 kb on + strand at 1786.295 kb on + strand at 1786.295 kb on + strand at 1786.295 kb on + strand at 1786.303 kb on - strand at 1786.303 kb on - strand at 1786.303 kb on - strand at 1786.313 kb on - strand at 1786.331 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 1,783,706 + BWI76_RS08425 0.29 -4.9 1,784,119 + BWI76_RS08425 0.64 -5.9 1,784,773 + BWI76_RS08430 0.27 -2.5 1,784,811 + BWI76_RS08430 0.32 -3.7 1,784,921 + BWI76_RS08430 0.44 -3.4 1,784,921 + BWI76_RS08430 0.44 -0.6 1,784,921 + BWI76_RS08430 0.44 -4.0 1,785,273 - BWI76_RS08430 0.85 -2.8 1,785,338 - -3.3 1,785,345 + -4.3 1,785,428 - +0.5 1,785,437 + -0.6 1,785,438 + +0.7 1,785,438 + -0.3 1,785,438 + -0.0 1,785,438 + +0.3 1,785,438 + +0.2 1,785,438 + +0.1 1,785,438 + -0.4 1,785,438 + +0.4 1,785,438 + +1.3 1,785,438 + +0.4 1,785,438 + +0.4 1,785,438 + +0.8 1,785,438 + +0.2 1,785,438 + +0.7 1,785,438 + +0.5 1,785,438 + -1.4 1,785,438 + +0.8 1,785,438 + -0.1 1,785,446 - +0.5 1,785,446 - +0.2 1,785,446 - -0.5 1,785,446 - +0.6 1,785,446 - -0.3 1,785,446 - -1.1 1,785,446 - +0.5 1,785,446 - +2.2 1,785,446 - +0.6 1,785,446 - +1.8 1,785,446 - +1.0 1,785,446 - +1.4 1,785,446 - -0.0 1,785,446 - +2.2 1,785,446 - +0.4 1,785,446 - -0.2 1,785,446 - +0.7 1,785,453 + +0.6 1,785,465 + -0.6 1,785,500 + -0.4 1,785,500 + -0.9 1,785,500 + +0.6 1,785,500 + +0.6 1,785,500 + +0.2 1,785,500 + -0.2 1,785,500 + -0.5 1,785,500 + -1.1 1,785,500 + -0.6 1,785,500 + -0.5 1,785,500 + -0.5 1,785,500 + -0.7 1,785,500 + +0.0 1,785,508 - -0.2 1,785,508 - -0.3 1,785,508 - -1.4 1,785,508 - -0.3 1,785,508 - +0.2 1,785,508 - +3.6 1,785,508 - -0.4 1,785,508 - +0.3 1,785,508 - -0.7 1,785,510 + -0.2 1,785,510 + -0.8 1,785,510 + +0.1 1,785,510 + +1.8 1,785,518 - -0.3 1,785,518 - -1.7 1,785,518 - +0.0 1,785,518 - +0.8 1,785,518 - +0.1 1,785,518 - -0.2 1,785,523 - -0.2 1,785,525 + +1.2 1,785,525 + -0.5 1,785,533 + +0.2 1,785,533 - +0.8 1,785,533 - -0.5 1,785,533 - -0.8 1,785,533 - -0.2 1,785,533 - +0.1 1,785,533 - -0.1 1,785,533 - -0.1 1,785,533 - -0.2 1,785,533 - -0.5 1,785,556 + -0.6 1,785,659 - +0.9 1,785,677 - -0.4 1,785,682 + +0.5 1,785,682 + -0.2 1,785,690 - -0.1 1,785,725 + -1.8 1,785,730 + BWI76_RS08435 0.10 -0.7 1,785,730 + BWI76_RS08435 0.10 -1.0 1,785,730 + BWI76_RS08435 0.10 -0.2 1,785,730 + BWI76_RS08435 0.10 -1.1 1,785,733 - BWI76_RS08435 0.11 -0.2 1,785,733 - BWI76_RS08435 0.11 +0.2 1,785,736 + BWI76_RS08435 0.11 +0.2 1,785,738 - BWI76_RS08435 0.12 -0.6 1,785,738 - BWI76_RS08435 0.12 +0.2 1,785,738 - BWI76_RS08435 0.12 +0.3 1,785,738 - BWI76_RS08435 0.12 +0.2 1,785,745 - BWI76_RS08435 0.13 -0.0 1,785,772 + BWI76_RS08435 0.16 +1.1 1,785,780 - BWI76_RS08435 0.18 -1.1 1,785,796 + BWI76_RS08435 0.20 +0.8 1,785,796 + BWI76_RS08435 0.20 -0.2 1,785,796 + BWI76_RS08435 0.20 -0.4 1,785,804 - BWI76_RS08435 0.21 +0.1 1,785,804 - BWI76_RS08435 0.21 -0.1 1,785,804 - BWI76_RS08435 0.21 +0.9 1,785,804 - BWI76_RS08435 0.21 +1.1 1,785,804 - BWI76_RS08435 0.21 +0.8 1,785,804 - BWI76_RS08435 0.21 +1.1 1,785,862 - BWI76_RS08435 0.29 +0.9 1,786,032 + BWI76_RS08435 0.54 -0.2 1,786,192 + BWI76_RS08435 0.77 -0.9 1,786,201 + +0.8 1,786,201 + BWI76_RS08435 0.78 -0.5 1,786,201 + BWI76_RS08435 0.78 -0.2 1,786,209 - BWI76_RS08435 0.80 +1.1 1,786,211 + BWI76_RS08435 0.80 -0.1 1,786,218 + BWI76_RS08435 0.81 -0.2 1,786,223 + BWI76_RS08435 0.82 +0.8 1,786,236 + BWI76_RS08435 0.83 -2.2 1,786,236 + BWI76_RS08435 0.83 -0.7 1,786,236 + BWI76_RS08435 0.83 -1.2 1,786,244 - BWI76_RS08435 0.85 +0.6 1,786,244 - BWI76_RS08435 0.85 -0.6 1,786,272 + BWI76_RS08435 0.89 +0.5 1,786,295 + +0.2 1,786,295 + -0.5 1,786,295 + -1.8 1,786,295 + -0.2 1,786,295 + +0.2 1,786,295 + +1.0 1,786,303 - +1.5 1,786,303 - -0.4 1,786,303 - +0.7 1,786,313 - +0.2 1,786,331 + +0.6
Or see this region's nucleotide sequence