Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS05525

Experiment: acetate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS05515 and BWI76_RS05520 are separated by 2 nucleotidesBWI76_RS05520 and BWI76_RS05525 are separated by 32 nucleotidesBWI76_RS05525 and BWI76_RS05530 are separated by 159 nucleotides BWI76_RS05515: BWI76_RS05515 - NADH:ubiquinone reductase (Na(+)-transporting) subunit F, at 1,156,452 to 1,157,675 _RS05515 BWI76_RS05520: BWI76_RS05520 - hypothetical protein, at 1,157,678 to 1,157,893 _RS05520 BWI76_RS05525: BWI76_RS05525 - glycerophosphodiester phosphodiesterase, at 1,157,926 to 1,158,783 _RS05525 BWI76_RS05530: BWI76_RS05530 - DNA polymerase IV, at 1,158,943 to 1,159,998 _RS05530 Position (kb) 1157 1158 1159Strain fitness (log2 ratio) -2 -1 0 1at 1157.126 kb on - strand, within BWI76_RS05515at 1157.340 kb on + strand, within BWI76_RS05515at 1157.773 kb on - strand, within BWI76_RS05520at 1157.809 kb on + strand, within BWI76_RS05520at 1157.820 kb on + strand, within BWI76_RS05520at 1157.820 kb on + strand, within BWI76_RS05520at 1157.828 kb on - strand, within BWI76_RS05520at 1158.058 kb on + strand, within BWI76_RS05525at 1158.058 kb on + strand, within BWI76_RS05525at 1158.329 kb on - strand, within BWI76_RS05525at 1158.330 kb on - strand, within BWI76_RS05525at 1158.542 kb on - strand, within BWI76_RS05525at 1158.945 kb on + strandat 1158.964 kb on + strandat 1158.964 kb on + strandat 1159.004 kb on + strandat 1159.004 kb on + strandat 1159.004 kb on + strandat 1159.051 kb on - strand, within BWI76_RS05530at 1159.164 kb on - strand, within BWI76_RS05530at 1159.410 kb on - strand, within BWI76_RS05530at 1159.482 kb on + strand, within BWI76_RS05530at 1159.523 kb on - strand, within BWI76_RS05530at 1159.528 kb on + strand, within BWI76_RS05530at 1159.549 kb on + strand, within BWI76_RS05530

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
remove
1,157,126 - BWI76_RS05515 0.55 +0.3
1,157,340 + BWI76_RS05515 0.73 -0.3
1,157,773 - BWI76_RS05520 0.44 -0.6
1,157,809 + BWI76_RS05520 0.61 +0.3
1,157,820 + BWI76_RS05520 0.66 -1.0
1,157,820 + BWI76_RS05520 0.66 +0.2
1,157,828 - BWI76_RS05520 0.69 -0.1
1,158,058 + BWI76_RS05525 0.15 -0.6
1,158,058 + BWI76_RS05525 0.15 -1.6
1,158,329 - BWI76_RS05525 0.47 -2.5
1,158,330 - BWI76_RS05525 0.47 -0.4
1,158,542 - BWI76_RS05525 0.72 -1.4
1,158,945 + +0.2
1,158,964 + -1.1
1,158,964 + -0.8
1,159,004 + -0.2
1,159,004 + -0.2
1,159,004 + +0.6
1,159,051 - BWI76_RS05530 0.10 +0.3
1,159,164 - BWI76_RS05530 0.21 -0.0
1,159,410 - BWI76_RS05530 0.44 -0.7
1,159,482 + BWI76_RS05530 0.51 +0.0
1,159,523 - BWI76_RS05530 0.55 -1.3
1,159,528 + BWI76_RS05530 0.55 -0.3
1,159,549 + BWI76_RS05530 0.57 -0.0

Or see this region's nucleotide sequence