Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS04050

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS04045 and BWI76_RS04050 are separated by 47 nucleotidesBWI76_RS04050 and BWI76_RS04055 are separated by 108 nucleotides BWI76_RS04045: BWI76_RS04045 - PTS system lactose/cellobiose-specific transporter subunit IIC, at 835,914 to 837,257 _RS04045 BWI76_RS04050: BWI76_RS04050 - hydroxamate siderophore iron reductase FhuF, at 837,305 to 838,093 _RS04050 BWI76_RS04055: BWI76_RS04055 - GGDEF domain-containing protein, at 838,202 to 839,248 _RS04055 Position (kb) 837 838 839Strain fitness (log2 ratio) -2 -1 0 1 2at 836.348 kb on - strand, within BWI76_RS04045at 836.524 kb on + strand, within BWI76_RS04045at 836.531 kb on - strand, within BWI76_RS04045at 836.660 kb on - strand, within BWI76_RS04045at 836.675 kb on - strand, within BWI76_RS04045at 836.842 kb on + strand, within BWI76_RS04045at 837.008 kb on + strand, within BWI76_RS04045at 837.011 kb on - strand, within BWI76_RS04045at 837.016 kb on - strand, within BWI76_RS04045at 837.078 kb on - strand, within BWI76_RS04045at 837.143 kb on - strandat 837.337 kb on - strandat 837.366 kb on - strandat 837.434 kb on - strand, within BWI76_RS04050at 837.572 kb on + strand, within BWI76_RS04050at 837.777 kb on - strandat 837.839 kb on + strand, within BWI76_RS04050at 837.906 kb on + strand, within BWI76_RS04050at 837.946 kb on - strand, within BWI76_RS04050at 837.956 kb on - strand, within BWI76_RS04050at 837.970 kb on - strand, within BWI76_RS04050at 838.030 kb on + strandat 838.032 kb on + strandat 838.032 kb on + strandat 838.032 kb on + strandat 838.040 kb on - strandat 838.308 kb on - strand, within BWI76_RS04055at 838.405 kb on - strand, within BWI76_RS04055at 838.463 kb on + strand, within BWI76_RS04055at 838.534 kb on + strand, within BWI76_RS04055at 838.535 kb on + strand, within BWI76_RS04055at 838.605 kb on - strand, within BWI76_RS04055at 838.605 kb on - strand, within BWI76_RS04055at 838.607 kb on + strand, within BWI76_RS04055at 838.607 kb on + strandat 838.610 kb on - strand, within BWI76_RS04055at 838.615 kb on - strand, within BWI76_RS04055at 838.616 kb on - strand, within BWI76_RS04055at 838.624 kb on - strand, within BWI76_RS04055at 838.660 kb on - strand, within BWI76_RS04055at 838.662 kb on + strand, within BWI76_RS04055at 838.677 kb on + strand, within BWI76_RS04055at 838.690 kb on + strand, within BWI76_RS04055at 838.690 kb on + strand, within BWI76_RS04055at 838.698 kb on - strandat 838.705 kb on - strand, within BWI76_RS04055at 838.706 kb on - strand, within BWI76_RS04055at 838.732 kb on - strand, within BWI76_RS04055at 838.759 kb on + strand, within BWI76_RS04055at 838.767 kb on - strand, within BWI76_RS04055at 838.769 kb on + strand, within BWI76_RS04055at 838.783 kb on - strand, within BWI76_RS04055at 838.802 kb on + strand, within BWI76_RS04055at 838.803 kb on + strand, within BWI76_RS04055at 838.810 kb on - strand, within BWI76_RS04055at 838.811 kb on - strand, within BWI76_RS04055at 838.811 kb on - strand, within BWI76_RS04055at 838.820 kb on + strand, within BWI76_RS04055at 838.820 kb on + strand, within BWI76_RS04055at 838.820 kb on + strand, within BWI76_RS04055at 838.820 kb on + strand, within BWI76_RS04055at 838.828 kb on - strand, within BWI76_RS04055at 838.848 kb on - strand, within BWI76_RS04055at 838.848 kb on - strand, within BWI76_RS04055at 838.848 kb on - strand, within BWI76_RS04055at 838.850 kb on + strand, within BWI76_RS04055at 838.850 kb on + strand, within BWI76_RS04055at 838.850 kb on + strand, within BWI76_RS04055at 838.850 kb on + strand, within BWI76_RS04055at 838.857 kb on - strand, within BWI76_RS04055at 838.867 kb on - strand, within BWI76_RS04055at 838.867 kb on - strand, within BWI76_RS04055at 838.871 kb on + strand, within BWI76_RS04055at 838.871 kb on - strand, within BWI76_RS04055at 838.876 kb on + strand, within BWI76_RS04055at 838.876 kb on - strand, within BWI76_RS04055at 838.942 kb on + strand, within BWI76_RS04055at 838.987 kb on + strand, within BWI76_RS04055at 838.996 kb on + strand, within BWI76_RS04055at 839.001 kb on + strand, within BWI76_RS04055at 839.001 kb on + strand, within BWI76_RS04055at 839.001 kb on + strand, within BWI76_RS04055at 839.004 kb on - strand, within BWI76_RS04055at 839.004 kb on - strand, within BWI76_RS04055at 839.009 kb on - strand, within BWI76_RS04055at 839.009 kb on - strand, within BWI76_RS04055at 839.009 kb on - strand, within BWI76_RS04055at 839.011 kb on + strand, within BWI76_RS04055at 839.011 kb on + strand, within BWI76_RS04055at 839.058 kb on + strand, within BWI76_RS04055at 839.058 kb on + strand, within BWI76_RS04055at 839.058 kb on + strand, within BWI76_RS04055at 839.058 kb on + strand, within BWI76_RS04055at 839.058 kb on + strand, within BWI76_RS04055at 839.058 kb on + strand, within BWI76_RS04055at 839.066 kb on + strand, within BWI76_RS04055at 839.066 kb on + strand, within BWI76_RS04055at 839.066 kb on + strand, within BWI76_RS04055at 839.066 kb on + strand, within BWI76_RS04055at 839.066 kb on - strand, within BWI76_RS04055at 839.074 kb on - strand, within BWI76_RS04055at 839.075 kb on + strand, within BWI76_RS04055at 839.075 kb on + strandat 839.075 kb on + strand, within BWI76_RS04055at 839.075 kb on + strand, within BWI76_RS04055at 839.075 kb on - strand, within BWI76_RS04055at 839.080 kb on + strand, within BWI76_RS04055at 839.083 kb on - strand, within BWI76_RS04055at 839.083 kb on - strand, within BWI76_RS04055at 839.083 kb on - strand, within BWI76_RS04055at 839.083 kb on - strand, within BWI76_RS04055at 839.088 kb on - strand, within BWI76_RS04055at 839.088 kb on - strand, within BWI76_RS04055

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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836,348 - BWI76_RS04045 0.32 -0.5
836,524 + BWI76_RS04045 0.45 +0.7
836,531 - BWI76_RS04045 0.46 -0.1
836,660 - BWI76_RS04045 0.56 -0.6
836,675 - BWI76_RS04045 0.57 +0.3
836,842 + BWI76_RS04045 0.69 -0.2
837,008 + BWI76_RS04045 0.81 +0.6
837,011 - BWI76_RS04045 0.82 +1.2
837,016 - BWI76_RS04045 0.82 -0.1
837,078 - BWI76_RS04045 0.87 +0.7
837,143 - -0.2
837,337 - -2.3
837,366 - -1.6
837,434 - BWI76_RS04050 0.16 -1.1
837,572 + BWI76_RS04050 0.34 -1.6
837,777 - +0.8
837,839 + BWI76_RS04050 0.68 -0.7
837,906 + BWI76_RS04050 0.76 -1.2
837,946 - BWI76_RS04050 0.81 -0.5
837,956 - BWI76_RS04050 0.83 -1.4
837,970 - BWI76_RS04050 0.84 -1.4
838,030 + -0.5
838,032 + +0.5
838,032 + -0.5
838,032 + -2.0
838,040 - -0.6
838,308 - BWI76_RS04055 0.10 +0.2
838,405 - BWI76_RS04055 0.19 -0.2
838,463 + BWI76_RS04055 0.25 +1.7
838,534 + BWI76_RS04055 0.32 +0.1
838,535 + BWI76_RS04055 0.32 +1.0
838,605 - BWI76_RS04055 0.38 +0.8
838,605 - BWI76_RS04055 0.38 -0.6
838,607 + BWI76_RS04055 0.39 +0.4
838,607 + -0.6
838,610 - BWI76_RS04055 0.39 +1.0
838,615 - BWI76_RS04055 0.39 +0.5
838,616 - BWI76_RS04055 0.40 +0.6
838,624 - BWI76_RS04055 0.40 +0.2
838,660 - BWI76_RS04055 0.44 +0.4
838,662 + BWI76_RS04055 0.44 -0.0
838,677 + BWI76_RS04055 0.45 +1.2
838,690 + BWI76_RS04055 0.47 -1.2
838,690 + BWI76_RS04055 0.47 +0.5
838,698 - -1.2
838,705 - BWI76_RS04055 0.48 +0.2
838,706 - BWI76_RS04055 0.48 -1.6
838,732 - BWI76_RS04055 0.51 +0.0
838,759 + BWI76_RS04055 0.53 +0.3
838,767 - BWI76_RS04055 0.54 +0.4
838,769 + BWI76_RS04055 0.54 +0.1
838,783 - BWI76_RS04055 0.55 +1.8
838,802 + BWI76_RS04055 0.57 +0.2
838,803 + BWI76_RS04055 0.57 +0.3
838,810 - BWI76_RS04055 0.58 -0.7
838,811 - BWI76_RS04055 0.58 +0.3
838,811 - BWI76_RS04055 0.58 -0.1
838,820 + BWI76_RS04055 0.59 -0.3
838,820 + BWI76_RS04055 0.59 +0.6
838,820 + BWI76_RS04055 0.59 +0.1
838,820 + BWI76_RS04055 0.59 -0.2
838,828 - BWI76_RS04055 0.60 +0.8
838,848 - BWI76_RS04055 0.62 -2.0
838,848 - BWI76_RS04055 0.62 -0.2
838,848 - BWI76_RS04055 0.62 -1.4
838,850 + BWI76_RS04055 0.62 -0.3
838,850 + BWI76_RS04055 0.62 +0.0
838,850 + BWI76_RS04055 0.62 +0.6
838,850 + BWI76_RS04055 0.62 +0.3
838,857 - BWI76_RS04055 0.63 -0.7
838,867 - BWI76_RS04055 0.64 -0.6
838,867 - BWI76_RS04055 0.64 +1.0
838,871 + BWI76_RS04055 0.64 -1.0
838,871 - BWI76_RS04055 0.64 -0.4
838,876 + BWI76_RS04055 0.64 +2.1
838,876 - BWI76_RS04055 0.64 +0.9
838,942 + BWI76_RS04055 0.71 -0.1
838,987 + BWI76_RS04055 0.75 -0.6
838,996 + BWI76_RS04055 0.76 +0.3
839,001 + BWI76_RS04055 0.76 +0.4
839,001 + BWI76_RS04055 0.76 -0.7
839,001 + BWI76_RS04055 0.76 +0.9
839,004 - BWI76_RS04055 0.77 -0.5
839,004 - BWI76_RS04055 0.77 -0.4
839,009 - BWI76_RS04055 0.77 +0.6
839,009 - BWI76_RS04055 0.77 -0.3
839,009 - BWI76_RS04055 0.77 +0.8
839,011 + BWI76_RS04055 0.77 +0.3
839,011 + BWI76_RS04055 0.77 -0.1
839,058 + BWI76_RS04055 0.82 -0.1
839,058 + BWI76_RS04055 0.82 +0.1
839,058 + BWI76_RS04055 0.82 -0.9
839,058 + BWI76_RS04055 0.82 -0.1
839,058 + BWI76_RS04055 0.82 +1.2
839,058 + BWI76_RS04055 0.82 +0.5
839,066 + BWI76_RS04055 0.83 +0.7
839,066 + BWI76_RS04055 0.83 +0.1
839,066 + BWI76_RS04055 0.83 +0.1
839,066 + BWI76_RS04055 0.83 +0.2
839,066 - BWI76_RS04055 0.83 +1.0
839,074 - BWI76_RS04055 0.83 -0.1
839,075 + BWI76_RS04055 0.83 -0.4
839,075 + -0.2
839,075 + BWI76_RS04055 0.83 -1.3
839,075 + BWI76_RS04055 0.83 +0.7
839,075 - BWI76_RS04055 0.83 -0.5
839,080 + BWI76_RS04055 0.84 -0.7
839,083 - BWI76_RS04055 0.84 -0.0
839,083 - BWI76_RS04055 0.84 -1.7
839,083 - BWI76_RS04055 0.84 +1.3
839,083 - BWI76_RS04055 0.84 -0.9
839,088 - BWI76_RS04055 0.85 -0.2
839,088 - BWI76_RS04055 0.85 +1.8

Or see this region's nucleotide sequence