Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS02225

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS02215 and BWI76_RS02220 overlap by 1 nucleotidesBWI76_RS02220 and BWI76_RS02225 overlap by 4 nucleotidesBWI76_RS02225 and BWI76_RS02230 are separated by 0 nucleotidesBWI76_RS02230 and BWI76_RS02235 are separated by 204 nucleotides BWI76_RS02215: BWI76_RS02215 - carbon-phosphorus lyase complex subunit PhnI, at 458,357 to 459,421 _RS02215 BWI76_RS02220: BWI76_RS02220 - carbon-phosphorus lyase subunit PhnH, at 459,421 to 460,005 _RS02220 BWI76_RS02225: BWI76_RS02225 - phosphonate C-P lyase system protein PhnG, at 460,002 to 460,454 _RS02225 BWI76_RS02230: BWI76_RS02230 - phosphonate metabolism transcriptional regulator PhnF, at 460,455 to 461,180 _RS02230 BWI76_RS02235: BWI76_RS02235 - VOC family protein, at 461,385 to 461,819 _RS02235 Position (kb) 460 461Strain fitness (log2 ratio) -2 -1 0 1at 459.224 kb on - strand, within BWI76_RS02215at 459.427 kb on - strandat 459.794 kb on + strand, within BWI76_RS02220at 459.804 kb on + strand, within BWI76_RS02220at 459.906 kb on + strand, within BWI76_RS02220at 460.008 kb on - strandat 460.181 kb on - strand, within BWI76_RS02225at 460.182 kb on - strand, within BWI76_RS02225at 460.319 kb on + strand, within BWI76_RS02225at 460.342 kb on + strand, within BWI76_RS02225at 460.546 kb on - strand, within BWI76_RS02230at 460.654 kb on - strand, within BWI76_RS02230at 460.691 kb on + strand, within BWI76_RS02230at 460.718 kb on + strand, within BWI76_RS02230at 460.744 kb on + strand, within BWI76_RS02230at 460.750 kb on - strand, within BWI76_RS02230at 460.752 kb on - strand, within BWI76_RS02230at 460.762 kb on - strand, within BWI76_RS02230at 460.821 kb on + strand, within BWI76_RS02230at 460.890 kb on - strand, within BWI76_RS02230at 461.027 kb on + strand, within BWI76_RS02230at 461.027 kb on + strand, within BWI76_RS02230at 461.035 kb on - strand, within BWI76_RS02230at 461.035 kb on - strand, within BWI76_RS02230at 461.196 kb on + strandat 461.409 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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459,224 - BWI76_RS02215 0.81 -0.2
459,427 - +1.0
459,794 + BWI76_RS02220 0.64 -0.5
459,804 + BWI76_RS02220 0.65 -0.1
459,906 + BWI76_RS02220 0.83 -0.5
460,008 - -0.5
460,181 - BWI76_RS02225 0.40 -1.1
460,182 - BWI76_RS02225 0.40 -1.3
460,319 + BWI76_RS02225 0.70 +0.5
460,342 + BWI76_RS02225 0.75 -0.8
460,546 - BWI76_RS02230 0.13 -1.8
460,654 - BWI76_RS02230 0.27 +0.7
460,691 + BWI76_RS02230 0.33 +0.3
460,718 + BWI76_RS02230 0.36 -0.3
460,744 + BWI76_RS02230 0.40 +1.1
460,750 - BWI76_RS02230 0.41 +0.2
460,752 - BWI76_RS02230 0.41 +1.1
460,762 - BWI76_RS02230 0.42 +0.1
460,821 + BWI76_RS02230 0.50 -0.1
460,890 - BWI76_RS02230 0.60 +0.1
461,027 + BWI76_RS02230 0.79 +0.8
461,027 + BWI76_RS02230 0.79 -0.6
461,035 - BWI76_RS02230 0.80 -0.5
461,035 - BWI76_RS02230 0.80 -0.7
461,196 + -0.1
461,409 - +0.1

Or see this region's nucleotide sequence