Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS01655 and BWI76_RS01660 are separated by 259 nucleotides BWI76_RS01660 and BWI76_RS01665 are separated by 31 nucleotides
BWI76_RS01655: BWI76_RS01655 - homoserine O-succinyltransferase, at 335,729 to 336,658
_RS01655
BWI76_RS01660: BWI76_RS01660 - malate synthase A, at 336,918 to 338,519
_RS01660
BWI76_RS01665: BWI76_RS01665 - Isocitrate lyase (EC 4.1.3.1) <small>(from data)</small>, at 338,551 to 339,855
_RS01665
Position (kb) 336
337
338
339 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 335.918 kb on - strand, within BWI76_RS01655 at 336.033 kb on + strand, within BWI76_RS01655 at 336.115 kb on - strand, within BWI76_RS01655 at 336.115 kb on - strand, within BWI76_RS01655 at 336.135 kb on + strand, within BWI76_RS01655 at 336.143 kb on - strand, within BWI76_RS01655 at 336.447 kb on + strand, within BWI76_RS01655 at 336.447 kb on + strand, within BWI76_RS01655 at 336.455 kb on - strand, within BWI76_RS01655 at 336.621 kb on - strand at 336.660 kb on + strand at 336.771 kb on + strand at 336.909 kb on - strand at 336.970 kb on - strand at 337.020 kb on + strand at 337.284 kb on - strand, within BWI76_RS01660 at 337.316 kb on + strand, within BWI76_RS01660 at 337.333 kb on - strand, within BWI76_RS01660 at 337.362 kb on - strand, within BWI76_RS01660 at 337.365 kb on - strand, within BWI76_RS01660 at 337.629 kb on - strand, within BWI76_RS01660 at 337.650 kb on - strand, within BWI76_RS01660 at 337.717 kb on + strand, within BWI76_RS01660 at 337.826 kb on + strand, within BWI76_RS01660 at 337.870 kb on - strand, within BWI76_RS01660 at 338.149 kb on - strand, within BWI76_RS01660 at 338.334 kb on + strand, within BWI76_RS01660 at 338.609 kb on + strand at 339.333 kb on - strand, within BWI76_RS01665 at 339.344 kb on + strand, within BWI76_RS01665 at 339.487 kb on + strand, within BWI76_RS01665 at 339.493 kb on + strand, within BWI76_RS01665 at 339.493 kb on + strand, within BWI76_RS01665
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 335,918 - BWI76_RS01655 0.20 -3.3 336,033 + BWI76_RS01655 0.33 -1.5 336,115 - BWI76_RS01655 0.42 -3.5 336,115 - BWI76_RS01655 0.42 -4.7 336,135 + BWI76_RS01655 0.44 -3.2 336,143 - BWI76_RS01655 0.45 -3.1 336,447 + BWI76_RS01655 0.77 -3.7 336,447 + BWI76_RS01655 0.77 -3.4 336,455 - BWI76_RS01655 0.78 -4.1 336,621 - +0.3 336,660 + -1.0 336,771 + -1.6 336,909 - -4.1 336,970 - -3.7 337,020 + -3.0 337,284 - BWI76_RS01660 0.23 -0.2 337,316 + BWI76_RS01660 0.25 -3.3 337,333 - BWI76_RS01660 0.26 -3.1 337,362 - BWI76_RS01660 0.28 -1.9 337,365 - BWI76_RS01660 0.28 +0.5 337,629 - BWI76_RS01660 0.44 -2.2 337,650 - BWI76_RS01660 0.46 -3.2 337,717 + BWI76_RS01660 0.50 -0.8 337,826 + BWI76_RS01660 0.57 -3.3 337,870 - BWI76_RS01660 0.59 -2.3 338,149 - BWI76_RS01660 0.77 -4.6 338,334 + BWI76_RS01660 0.88 -6.1 338,609 + -4.5 339,333 - BWI76_RS01665 0.60 -3.6 339,344 + BWI76_RS01665 0.61 -5.8 339,487 + BWI76_RS01665 0.72 -1.7 339,493 + BWI76_RS01665 0.72 -0.8 339,493 + BWI76_RS01665 0.72 -4.9
Or see this region's nucleotide sequence