Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS01660

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS01655 and BWI76_RS01660 are separated by 259 nucleotidesBWI76_RS01660 and BWI76_RS01665 are separated by 31 nucleotides BWI76_RS01655: BWI76_RS01655 - homoserine O-succinyltransferase, at 335,729 to 336,658 _RS01655 BWI76_RS01660: BWI76_RS01660 - malate synthase A, at 336,918 to 338,519 _RS01660 BWI76_RS01665: BWI76_RS01665 - Isocitrate lyase (EC 4.1.3.1) (from data), at 338,551 to 339,855 _RS01665 Position (kb) 336 337 338 339Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 335.918 kb on - strand, within BWI76_RS01655at 336.033 kb on + strand, within BWI76_RS01655at 336.115 kb on - strand, within BWI76_RS01655at 336.115 kb on - strand, within BWI76_RS01655at 336.135 kb on + strand, within BWI76_RS01655at 336.143 kb on - strand, within BWI76_RS01655at 336.447 kb on + strand, within BWI76_RS01655at 336.447 kb on + strand, within BWI76_RS01655at 336.455 kb on - strand, within BWI76_RS01655at 336.621 kb on - strandat 336.660 kb on + strandat 336.771 kb on + strandat 336.909 kb on - strandat 336.970 kb on - strandat 337.020 kb on + strandat 337.284 kb on - strand, within BWI76_RS01660at 337.316 kb on + strand, within BWI76_RS01660at 337.333 kb on - strand, within BWI76_RS01660at 337.362 kb on - strand, within BWI76_RS01660at 337.365 kb on - strand, within BWI76_RS01660at 337.629 kb on - strand, within BWI76_RS01660at 337.650 kb on - strand, within BWI76_RS01660at 337.717 kb on + strand, within BWI76_RS01660at 337.826 kb on + strand, within BWI76_RS01660at 337.870 kb on - strand, within BWI76_RS01660at 338.149 kb on - strand, within BWI76_RS01660at 338.334 kb on + strand, within BWI76_RS01660at 338.609 kb on + strandat 339.333 kb on - strand, within BWI76_RS01665at 339.344 kb on + strand, within BWI76_RS01665at 339.487 kb on + strand, within BWI76_RS01665at 339.493 kb on + strand, within BWI76_RS01665at 339.493 kb on + strand, within BWI76_RS01665

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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335,918 - BWI76_RS01655 0.20 -3.3
336,033 + BWI76_RS01655 0.33 -1.5
336,115 - BWI76_RS01655 0.42 -3.5
336,115 - BWI76_RS01655 0.42 -4.7
336,135 + BWI76_RS01655 0.44 -3.2
336,143 - BWI76_RS01655 0.45 -3.1
336,447 + BWI76_RS01655 0.77 -3.7
336,447 + BWI76_RS01655 0.77 -3.4
336,455 - BWI76_RS01655 0.78 -4.1
336,621 - +0.3
336,660 + -1.0
336,771 + -1.6
336,909 - -4.1
336,970 - -3.7
337,020 + -3.0
337,284 - BWI76_RS01660 0.23 -0.2
337,316 + BWI76_RS01660 0.25 -3.3
337,333 - BWI76_RS01660 0.26 -3.1
337,362 - BWI76_RS01660 0.28 -1.9
337,365 - BWI76_RS01660 0.28 +0.5
337,629 - BWI76_RS01660 0.44 -2.2
337,650 - BWI76_RS01660 0.46 -3.2
337,717 + BWI76_RS01660 0.50 -0.8
337,826 + BWI76_RS01660 0.57 -3.3
337,870 - BWI76_RS01660 0.59 -2.3
338,149 - BWI76_RS01660 0.77 -4.6
338,334 + BWI76_RS01660 0.88 -6.1
338,609 + -4.5
339,333 - BWI76_RS01665 0.60 -3.6
339,344 + BWI76_RS01665 0.61 -5.8
339,487 + BWI76_RS01665 0.72 -1.7
339,493 + BWI76_RS01665 0.72 -0.8
339,493 + BWI76_RS01665 0.72 -4.9

Or see this region's nucleotide sequence