Experiment: outer cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_23915 and AO353_23920 are separated by 0 nucleotides AO353_23920 and AO353_23925 overlap by 11 nucleotides AO353_23925 and AO353_23930 are separated by 44 nucleotides AO353_23930 and AO353_23935 are separated by 23 nucleotides
AO353_23915: AO353_23915 - chemotaxis protein CheY, at 5,247,027 to 5,250,494
_23915
AO353_23920: AO353_23920 - chemotaxis protein CheR, at 5,250,495 to 5,251,316
_23920
AO353_23925: AO353_23925 - histidine kinase, at 5,251,306 to 5,252,520
_23925
AO353_23930: AO353_23930 - chemotaxis protein CheY, at 5,252,565 to 5,252,942
_23930
AO353_23935: AO353_23935 - hypothetical protein, at 5,252,966 to 5,254,021
_23935
Position (kb) 5251
5252
5253 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 5250.488 kb on + strand at 5250.488 kb on + strand at 5250.488 kb on + strand at 5250.489 kb on - strand at 5250.489 kb on - strand at 5250.489 kb on - strand at 5250.492 kb on + strand at 5250.493 kb on - strand at 5250.493 kb on - strand at 5250.493 kb on - strand at 5250.493 kb on - strand at 5250.493 kb on - strand at 5250.493 kb on - strand at 5250.506 kb on + strand at 5250.506 kb on + strand at 5250.507 kb on - strand at 5250.543 kb on + strand at 5250.552 kb on + strand at 5250.552 kb on + strand at 5250.553 kb on - strand at 5250.553 kb on - strand at 5250.553 kb on - strand at 5250.553 kb on - strand at 5250.553 kb on - strand at 5250.553 kb on - strand at 5250.559 kb on - strand at 5250.574 kb on - strand at 5250.784 kb on - strand, within AO353_23920 at 5250.784 kb on - strand, within AO353_23920 at 5250.784 kb on - strand, within AO353_23920 at 5250.834 kb on + strand, within AO353_23920 at 5250.835 kb on - strand, within AO353_23920 at 5250.835 kb on - strand, within AO353_23920 at 5250.963 kb on + strand, within AO353_23920 at 5250.963 kb on + strand, within AO353_23920 at 5250.971 kb on + strand, within AO353_23920 at 5250.972 kb on - strand, within AO353_23920 at 5250.972 kb on - strand, within AO353_23920 at 5250.972 kb on - strand, within AO353_23920 at 5250.972 kb on - strand, within AO353_23920 at 5250.975 kb on + strand, within AO353_23920 at 5250.975 kb on + strand, within AO353_23920 at 5250.975 kb on + strand, within AO353_23920 at 5250.976 kb on - strand, within AO353_23920 at 5250.976 kb on - strand, within AO353_23920 at 5251.012 kb on - strand, within AO353_23920 at 5251.012 kb on - strand, within AO353_23920 at 5251.012 kb on - strand, within AO353_23920 at 5251.012 kb on - strand at 5251.012 kb on - strand, within AO353_23920 at 5251.012 kb on - strand, within AO353_23920 at 5251.012 kb on - strand, within AO353_23920 at 5251.012 kb on - strand, within AO353_23920 at 5251.014 kb on + strand, within AO353_23920 at 5251.014 kb on + strand, within AO353_23920 at 5251.015 kb on - strand, within AO353_23920 at 5251.015 kb on - strand, within AO353_23920 at 5251.015 kb on - strand, within AO353_23920 at 5251.015 kb on - strand, within AO353_23920 at 5251.015 kb on - strand, within AO353_23920 at 5251.026 kb on + strand, within AO353_23920 at 5251.254 kb on + strand at 5251.254 kb on + strand at 5251.255 kb on - strand at 5251.255 kb on - strand at 5251.297 kb on - strand at 5251.314 kb on + strand at 5251.314 kb on + strand at 5251.314 kb on + strand at 5251.315 kb on - strand at 5251.315 kb on - strand at 5251.318 kb on - strand at 5251.405 kb on + strand at 5251.405 kb on + strand at 5251.405 kb on + strand at 5251.405 kb on + strand at 5251.406 kb on - strand at 5251.406 kb on - strand at 5251.406 kb on - strand at 5251.406 kb on - strand at 5251.406 kb on - strand at 5251.588 kb on + strand, within AO353_23925 at 5251.589 kb on - strand, within AO353_23925 at 5251.603 kb on + strand, within AO353_23925 at 5251.632 kb on + strand, within AO353_23925 at 5251.633 kb on - strand, within AO353_23925 at 5251.849 kb on - strand, within AO353_23925 at 5251.849 kb on - strand, within AO353_23925 at 5251.972 kb on - strand, within AO353_23925 at 5252.252 kb on - strand, within AO353_23925 at 5252.252 kb on - strand, within AO353_23925 at 5252.326 kb on - strand, within AO353_23925 at 5252.326 kb on - strand, within AO353_23925 at 5252.382 kb on - strand, within AO353_23925 at 5252.387 kb on + strand, within AO353_23925 at 5252.392 kb on - strand, within AO353_23925 at 5252.392 kb on - strand, within AO353_23925 at 5252.392 kb on - strand, within AO353_23925 at 5252.392 kb on - strand, within AO353_23925 at 5252.448 kb on + strand at 5252.462 kb on + strand at 5252.463 kb on - strand at 5252.463 kb on - strand at 5252.542 kb on + strand at 5252.543 kb on - strand at 5252.626 kb on + strand, within AO353_23930 at 5252.627 kb on - strand, within AO353_23930 at 5252.637 kb on + strand, within AO353_23930 at 5252.674 kb on + strand, within AO353_23930 at 5252.674 kb on + strand, within AO353_23930 at 5252.674 kb on + strand, within AO353_23930 at 5252.674 kb on + strand, within AO353_23930 at 5252.674 kb on + strand at 5252.675 kb on - strand, within AO353_23930 at 5252.675 kb on - strand, within AO353_23930 at 5252.675 kb on - strand, within AO353_23930 at 5252.675 kb on - strand, within AO353_23930 at 5252.723 kb on + strand, within AO353_23930 at 5252.723 kb on + strand, within AO353_23930 at 5252.768 kb on - strand, within AO353_23930 at 5252.940 kb on + strand at 5252.941 kb on - strand at 5252.961 kb on - strand at 5253.063 kb on + strand at 5253.063 kb on + strand at 5253.063 kb on + strand at 5253.181 kb on - strand, within AO353_23935 at 5253.212 kb on + strand, within AO353_23935 at 5253.213 kb on - strand, within AO353_23935 at 5253.213 kb on - strand, within AO353_23935 at 5253.275 kb on + strand, within AO353_23935 at 5253.276 kb on - strand, within AO353_23935 at 5253.276 kb on - strand, within AO353_23935 at 5253.276 kb on - strand, within AO353_23935 at 5253.486 kb on + strand, within AO353_23935 at 5253.514 kb on + strand, within AO353_23935 at 5253.515 kb on - strand, within AO353_23935
Per-strain Table
Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay remove 5,250,488 + -1.8 5,250,488 + +0.4 5,250,488 + -0.0 5,250,489 - -1.7 5,250,489 - -0.7 5,250,489 - -0.7 5,250,492 + +1.2 5,250,493 - -0.5 5,250,493 - +1.6 5,250,493 - -0.5 5,250,493 - +0.9 5,250,493 - +0.4 5,250,493 - +0.8 5,250,506 + -1.6 5,250,506 + +0.2 5,250,507 - +1.3 5,250,543 + -2.1 5,250,552 + +0.1 5,250,552 + +0.9 5,250,553 - +1.1 5,250,553 - -0.2 5,250,553 - -2.3 5,250,553 - -1.1 5,250,553 - -2.1 5,250,553 - +1.7 5,250,559 - -0.5 5,250,574 - +3.3 5,250,784 - AO353_23920 0.35 -0.1 5,250,784 - AO353_23920 0.35 +1.3 5,250,784 - AO353_23920 0.35 -0.5 5,250,834 + AO353_23920 0.41 +0.9 5,250,835 - AO353_23920 0.41 -0.7 5,250,835 - AO353_23920 0.41 +0.1 5,250,963 + AO353_23920 0.57 -0.7 5,250,963 + AO353_23920 0.57 +2.4 5,250,971 + AO353_23920 0.58 -0.7 5,250,972 - AO353_23920 0.58 -0.2 5,250,972 - AO353_23920 0.58 -0.4 5,250,972 - AO353_23920 0.58 -0.3 5,250,972 - AO353_23920 0.58 -0.3 5,250,975 + AO353_23920 0.58 -0.9 5,250,975 + AO353_23920 0.58 -1.5 5,250,975 + AO353_23920 0.58 -1.7 5,250,976 - AO353_23920 0.59 +1.6 5,250,976 - AO353_23920 0.59 -1.8 5,251,012 - AO353_23920 0.63 -1.3 5,251,012 - AO353_23920 0.63 -1.3 5,251,012 - AO353_23920 0.63 -0.2 5,251,012 - -0.7 5,251,012 - AO353_23920 0.63 -1.9 5,251,012 - AO353_23920 0.63 +1.0 5,251,012 - AO353_23920 0.63 +1.0 5,251,012 - AO353_23920 0.63 +0.8 5,251,014 + AO353_23920 0.63 -0.6 5,251,014 + AO353_23920 0.63 -1.9 5,251,015 - AO353_23920 0.63 -2.3 5,251,015 - AO353_23920 0.63 -2.3 5,251,015 - AO353_23920 0.63 -2.6 5,251,015 - AO353_23920 0.63 -3.8 5,251,015 - AO353_23920 0.63 +2.2 5,251,026 + AO353_23920 0.65 +0.3 5,251,254 + -1.8 5,251,254 + +1.3 5,251,255 - -0.6 5,251,255 - +0.5 5,251,297 - -1.7 5,251,314 + -1.2 5,251,314 + -1.5 5,251,314 + -1.7 5,251,315 - -0.5 5,251,315 - -0.9 5,251,318 - +1.7 5,251,405 + -1.5 5,251,405 + -0.8 5,251,405 + +0.5 5,251,405 + -0.5 5,251,406 - -2.1 5,251,406 - -2.5 5,251,406 - +1.7 5,251,406 - +1.2 5,251,406 - -1.8 5,251,588 + AO353_23925 0.23 -0.1 5,251,589 - AO353_23925 0.23 -0.7 5,251,603 + AO353_23925 0.24 -1.7 5,251,632 + AO353_23925 0.27 +0.8 5,251,633 - AO353_23925 0.27 -1.2 5,251,849 - AO353_23925 0.45 -1.5 5,251,849 - AO353_23925 0.45 -1.1 5,251,972 - AO353_23925 0.55 +0.9 5,252,252 - AO353_23925 0.78 -2.4 5,252,252 - AO353_23925 0.78 -2.3 5,252,326 - AO353_23925 0.84 -1.1 5,252,326 - AO353_23925 0.84 +0.3 5,252,382 - AO353_23925 0.89 -2.4 5,252,387 + AO353_23925 0.89 +1.3 5,252,392 - AO353_23925 0.89 +0.3 5,252,392 - AO353_23925 0.89 -1.1 5,252,392 - AO353_23925 0.89 +1.6 5,252,392 - AO353_23925 0.89 +0.2 5,252,448 + +0.8 5,252,462 + -0.5 5,252,463 - -1.3 5,252,463 - +1.5 5,252,542 + -0.3 5,252,543 - -3.5 5,252,626 + AO353_23930 0.16 -0.3 5,252,627 - AO353_23930 0.16 +0.2 5,252,637 + AO353_23930 0.19 -1.1 5,252,674 + AO353_23930 0.29 +0.7 5,252,674 + AO353_23930 0.29 +1.3 5,252,674 + AO353_23930 0.29 +2.1 5,252,674 + AO353_23930 0.29 +0.3 5,252,674 + +3.1 5,252,675 - AO353_23930 0.29 +1.3 5,252,675 - AO353_23930 0.29 -0.9 5,252,675 - AO353_23930 0.29 +0.2 5,252,675 - AO353_23930 0.29 -0.4 5,252,723 + AO353_23930 0.42 -1.2 5,252,723 + AO353_23930 0.42 -1.7 5,252,768 - AO353_23930 0.54 +0.1 5,252,940 + +1.5 5,252,941 - +0.0 5,252,961 - -1.5 5,253,063 + -0.5 5,253,063 + -1.8 5,253,063 + -0.2 5,253,181 - AO353_23935 0.20 -0.7 5,253,212 + AO353_23935 0.23 +0.0 5,253,213 - AO353_23935 0.23 +1.1 5,253,213 - AO353_23935 0.23 +1.6 5,253,275 + AO353_23935 0.29 -2.7 5,253,276 - AO353_23935 0.29 +2.8 5,253,276 - AO353_23935 0.29 +2.3 5,253,276 - AO353_23935 0.29 +0.5 5,253,486 + AO353_23935 0.49 +0.2 5,253,514 + AO353_23935 0.52 -0.6 5,253,515 - AO353_23935 0.52 -0.5
Or see this region's nucleotide sequence