Experiment: outer cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_18765 and AO353_18770 are separated by 420 nucleotides AO353_18770 and AO353_18775 are separated by 11 nucleotides
AO353_18765: AO353_18765 - hypothetical protein, at 4,126,170 to 4,126,409
_18765
AO353_18770: AO353_18770 - flagellar biosynthesis protein FlhA, at 4,126,830 to 4,128,959
_18770
AO353_18775: AO353_18775 - flagellar biosynthesis protein FlhF, at 4,128,971 to 4,130,302
_18775
Position (kb) 4126
4127
4128
4129 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4126.123 kb on + strand at 4126.123 kb on + strand at 4126.123 kb on + strand at 4126.123 kb on + strand at 4126.123 kb on + strand at 4126.123 kb on + strand at 4126.123 kb on + strand at 4126.123 kb on + strand at 4126.124 kb on - strand at 4126.124 kb on - strand at 4126.124 kb on - strand at 4126.124 kb on - strand at 4126.124 kb on - strand at 4126.124 kb on - strand at 4126.124 kb on - strand at 4126.124 kb on - strand at 4126.171 kb on + strand at 4126.171 kb on + strand at 4126.171 kb on + strand at 4126.171 kb on + strand at 4126.171 kb on + strand at 4126.171 kb on + strand at 4126.171 kb on + strand at 4126.171 kb on + strand at 4126.171 kb on + strand at 4126.172 kb on - strand at 4126.172 kb on - strand at 4126.172 kb on - strand at 4126.172 kb on - strand at 4126.206 kb on + strand, within AO353_18765 at 4126.207 kb on - strand, within AO353_18765 at 4126.255 kb on + strand, within AO353_18765 at 4126.255 kb on + strand, within AO353_18765 at 4126.255 kb on + strand, within AO353_18765 at 4126.255 kb on + strand, within AO353_18765 at 4126.256 kb on - strand, within AO353_18765 at 4126.256 kb on - strand, within AO353_18765 at 4126.256 kb on - strand, within AO353_18765 at 4126.438 kb on + strand at 4126.439 kb on - strand at 4126.846 kb on + strand at 4126.846 kb on + strand at 4126.847 kb on - strand at 4126.847 kb on - strand at 4126.847 kb on - strand at 4127.019 kb on + strand at 4127.019 kb on + strand at 4127.192 kb on + strand, within AO353_18770 at 4127.196 kb on + strand, within AO353_18770 at 4127.196 kb on + strand, within AO353_18770 at 4127.196 kb on + strand, within AO353_18770 at 4127.196 kb on + strand, within AO353_18770 at 4127.196 kb on + strand, within AO353_18770 at 4127.196 kb on + strand, within AO353_18770 at 4127.196 kb on + strand, within AO353_18770 at 4127.196 kb on + strand, within AO353_18770 at 4127.196 kb on + strand, within AO353_18770 at 4127.196 kb on + strand, within AO353_18770 at 4127.196 kb on + strand, within AO353_18770 at 4127.197 kb on - strand, within AO353_18770 at 4127.197 kb on - strand, within AO353_18770 at 4127.197 kb on - strand, within AO353_18770 at 4127.197 kb on - strand, within AO353_18770 at 4127.197 kb on - strand, within AO353_18770 at 4127.197 kb on - strand, within AO353_18770 at 4127.197 kb on - strand, within AO353_18770 at 4127.197 kb on - strand, within AO353_18770 at 4127.197 kb on - strand, within AO353_18770 at 4127.197 kb on - strand, within AO353_18770 at 4127.207 kb on + strand, within AO353_18770 at 4127.294 kb on + strand, within AO353_18770 at 4127.384 kb on + strand, within AO353_18770 at 4127.412 kb on + strand, within AO353_18770 at 4127.413 kb on - strand, within AO353_18770 at 4127.413 kb on - strand, within AO353_18770 at 4127.481 kb on - strand, within AO353_18770 at 4127.553 kb on + strand, within AO353_18770 at 4127.553 kb on + strand, within AO353_18770 at 4127.553 kb on + strand, within AO353_18770 at 4127.553 kb on + strand, within AO353_18770 at 4127.553 kb on + strand, within AO353_18770 at 4127.802 kb on + strand, within AO353_18770 at 4127.803 kb on - strand, within AO353_18770 at 4128.109 kb on - strand, within AO353_18770 at 4128.153 kb on + strand, within AO353_18770 at 4128.192 kb on + strand, within AO353_18770 at 4128.193 kb on - strand, within AO353_18770 at 4128.312 kb on - strand, within AO353_18770 at 4128.345 kb on + strand, within AO353_18770 at 4128.345 kb on + strand, within AO353_18770 at 4128.346 kb on - strand, within AO353_18770 at 4128.346 kb on - strand, within AO353_18770 at 4128.346 kb on - strand, within AO353_18770 at 4128.408 kb on - strand, within AO353_18770 at 4128.475 kb on + strand, within AO353_18770 at 4128.476 kb on - strand, within AO353_18770 at 4128.476 kb on - strand, within AO353_18770 at 4128.476 kb on - strand, within AO353_18770 at 4128.567 kb on - strand, within AO353_18770 at 4128.567 kb on - strand, within AO353_18770 at 4128.628 kb on + strand, within AO353_18770 at 4128.628 kb on + strand, within AO353_18770 at 4128.628 kb on + strand, within AO353_18770 at 4128.628 kb on + strand, within AO353_18770 at 4128.629 kb on - strand, within AO353_18770 at 4128.629 kb on - strand, within AO353_18770 at 4128.629 kb on - strand, within AO353_18770 at 4128.683 kb on - strand, within AO353_18770 at 4128.683 kb on - strand, within AO353_18770 at 4128.693 kb on - strand, within AO353_18770 at 4128.826 kb on + strand at 4128.827 kb on - strand at 4128.898 kb on - strand at 4128.943 kb on + strand at 4128.962 kb on + strand at 4128.963 kb on - strand at 4128.970 kb on + strand at 4128.970 kb on + strand at 4128.971 kb on - strand at 4128.971 kb on - strand at 4128.979 kb on + strand at 4128.979 kb on + strand at 4128.979 kb on + strand at 4128.979 kb on + strand at 4128.980 kb on - strand at 4128.980 kb on - strand at 4128.980 kb on - strand at 4129.001 kb on - strand at 4129.106 kb on + strand, within AO353_18775 at 4129.106 kb on + strand, within AO353_18775 at 4129.411 kb on - strand, within AO353_18775 at 4129.675 kb on + strand, within AO353_18775 at 4129.676 kb on - strand, within AO353_18775 at 4129.709 kb on + strand, within AO353_18775 at 4129.709 kb on + strand, within AO353_18775 at 4129.710 kb on - strand, within AO353_18775 at 4129.710 kb on - strand, within AO353_18775 at 4129.721 kb on + strand, within AO353_18775 at 4129.802 kb on - strand, within AO353_18775 at 4129.802 kb on - strand, within AO353_18775
Per-strain Table
Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay remove 4,126,123 + -1.6 4,126,123 + +1.8 4,126,123 + -0.0 4,126,123 + -1.0 4,126,123 + +1.1 4,126,123 + +1.6 4,126,123 + -1.4 4,126,123 + +1.2 4,126,124 - +2.4 4,126,124 - +3.0 4,126,124 - +0.9 4,126,124 - +2.8 4,126,124 - -3.0 4,126,124 - +1.0 4,126,124 - +2.4 4,126,124 - +1.1 4,126,171 + -1.6 4,126,171 + +2.6 4,126,171 + +0.1 4,126,171 + -0.6 4,126,171 + +1.1 4,126,171 + +0.1 4,126,171 + -0.9 4,126,171 + +0.2 4,126,171 + -0.4 4,126,172 - +1.6 4,126,172 - +0.2 4,126,172 - +2.5 4,126,172 - +3.1 4,126,206 + AO353_18765 0.15 -1.0 4,126,207 - AO353_18765 0.15 +2.6 4,126,255 + AO353_18765 0.35 +0.0 4,126,255 + AO353_18765 0.35 +1.2 4,126,255 + AO353_18765 0.35 +3.4 4,126,255 + AO353_18765 0.35 -0.6 4,126,256 - AO353_18765 0.36 +0.5 4,126,256 - AO353_18765 0.36 -0.4 4,126,256 - AO353_18765 0.36 -0.4 4,126,438 + +2.4 4,126,439 - +1.6 4,126,846 + +0.8 4,126,846 + +0.0 4,126,847 - -1.6 4,126,847 - -1.5 4,126,847 - -0.4 4,127,019 + -1.4 4,127,019 + -2.6 4,127,192 + AO353_18770 0.17 -1.8 4,127,196 + AO353_18770 0.17 -1.4 4,127,196 + AO353_18770 0.17 -3.2 4,127,196 + AO353_18770 0.17 +1.4 4,127,196 + AO353_18770 0.17 +0.2 4,127,196 + AO353_18770 0.17 -2.0 4,127,196 + AO353_18770 0.17 -0.9 4,127,196 + AO353_18770 0.17 -2.2 4,127,196 + AO353_18770 0.17 +0.7 4,127,196 + AO353_18770 0.17 -1.3 4,127,196 + AO353_18770 0.17 -1.3 4,127,196 + AO353_18770 0.17 -1.1 4,127,197 - AO353_18770 0.17 -2.3 4,127,197 - AO353_18770 0.17 -1.6 4,127,197 - AO353_18770 0.17 -1.0 4,127,197 - AO353_18770 0.17 -2.5 4,127,197 - AO353_18770 0.17 -2.3 4,127,197 - AO353_18770 0.17 -1.9 4,127,197 - AO353_18770 0.17 -1.8 4,127,197 - AO353_18770 0.17 -0.4 4,127,197 - AO353_18770 0.17 -0.6 4,127,197 - AO353_18770 0.17 -3.1 4,127,207 + AO353_18770 0.18 -1.4 4,127,294 + AO353_18770 0.22 +0.0 4,127,384 + AO353_18770 0.26 -2.0 4,127,412 + AO353_18770 0.27 -0.2 4,127,413 - AO353_18770 0.27 -1.1 4,127,413 - AO353_18770 0.27 -0.4 4,127,481 - AO353_18770 0.31 -0.9 4,127,553 + AO353_18770 0.34 +0.8 4,127,553 + AO353_18770 0.34 -2.2 4,127,553 + AO353_18770 0.34 -3.4 4,127,553 + AO353_18770 0.34 -1.1 4,127,553 + AO353_18770 0.34 -0.4 4,127,802 + AO353_18770 0.46 -0.4 4,127,803 - AO353_18770 0.46 -2.9 4,128,109 - AO353_18770 0.60 +0.0 4,128,153 + AO353_18770 0.62 +0.5 4,128,192 + AO353_18770 0.64 -2.9 4,128,193 - AO353_18770 0.64 -1.0 4,128,312 - AO353_18770 0.70 +0.2 4,128,345 + AO353_18770 0.71 +0.2 4,128,345 + AO353_18770 0.71 -0.4 4,128,346 - AO353_18770 0.71 -2.3 4,128,346 - AO353_18770 0.71 -0.4 4,128,346 - AO353_18770 0.71 -2.1 4,128,408 - AO353_18770 0.74 -2.5 4,128,475 + AO353_18770 0.77 -1.9 4,128,476 - AO353_18770 0.77 -1.6 4,128,476 - AO353_18770 0.77 -2.3 4,128,476 - AO353_18770 0.77 -2.7 4,128,567 - AO353_18770 0.82 -1.4 4,128,567 - AO353_18770 0.82 -1.2 4,128,628 + AO353_18770 0.84 -0.8 4,128,628 + AO353_18770 0.84 -2.5 4,128,628 + AO353_18770 0.84 -0.9 4,128,628 + AO353_18770 0.84 -0.2 4,128,629 - AO353_18770 0.84 -2.0 4,128,629 - AO353_18770 0.84 -1.0 4,128,629 - AO353_18770 0.84 +0.8 4,128,683 - AO353_18770 0.87 -1.1 4,128,683 - AO353_18770 0.87 -2.1 4,128,693 - AO353_18770 0.87 +3.3 4,128,826 + +0.0 4,128,827 - -0.4 4,128,898 - -1.6 4,128,943 + -2.2 4,128,962 + -0.6 4,128,963 - -2.4 4,128,970 + -2.1 4,128,970 + -1.8 4,128,971 - -1.6 4,128,971 - -0.2 4,128,979 + +1.0 4,128,979 + +1.0 4,128,979 + -1.6 4,128,979 + +2.0 4,128,980 - -0.8 4,128,980 - -2.3 4,128,980 - -0.6 4,129,001 - -0.8 4,129,106 + AO353_18775 0.10 -2.1 4,129,106 + AO353_18775 0.10 -2.3 4,129,411 - AO353_18775 0.33 -1.0 4,129,675 + AO353_18775 0.53 -1.4 4,129,676 - AO353_18775 0.53 -2.6 4,129,709 + AO353_18775 0.55 -1.4 4,129,709 + AO353_18775 0.55 +1.7 4,129,710 - AO353_18775 0.55 +0.2 4,129,710 - AO353_18775 0.55 -0.8 4,129,721 + AO353_18775 0.56 -1.4 4,129,802 - AO353_18775 0.62 -3.4 4,129,802 - AO353_18775 0.62 -1.4
Or see this region's nucleotide sequence