Experiment: outer cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_14675 and AO353_14680 are separated by 123 nucleotides AO353_14680 and AO353_14685 are separated by 116 nucleotides
AO353_14675: AO353_14675 - hypothetical protein, at 3,251,270 to 3,252,373
_14675
AO353_14680: AO353_14680 - tRNA-Met, at 3,252,497 to 3,252,573
_14680
AO353_14685: AO353_14685 - chemotaxis protein, at 3,252,690 to 3,254,747
_14685
Position (kb)
3252
3253 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3251.678 kb on + strand, within AO353_14675 at 3251.678 kb on + strand, within AO353_14675 at 3251.678 kb on + strand, within AO353_14675 at 3251.678 kb on + strand, within AO353_14675 at 3251.679 kb on - strand, within AO353_14675 at 3251.679 kb on - strand, within AO353_14675 at 3251.699 kb on + strand, within AO353_14675 at 3251.699 kb on + strand, within AO353_14675 at 3251.699 kb on + strand, within AO353_14675 at 3251.699 kb on + strand, within AO353_14675 at 3251.699 kb on + strand, within AO353_14675 at 3251.700 kb on - strand, within AO353_14675 at 3251.700 kb on - strand, within AO353_14675 at 3251.700 kb on - strand, within AO353_14675 at 3251.700 kb on - strand, within AO353_14675 at 3251.715 kb on + strand, within AO353_14675 at 3251.716 kb on - strand, within AO353_14675 at 3251.716 kb on - strand, within AO353_14675 at 3251.716 kb on - strand, within AO353_14675 at 3251.763 kb on + strand, within AO353_14675 at 3251.763 kb on + strand, within AO353_14675 at 3251.763 kb on + strand, within AO353_14675 at 3251.764 kb on - strand, within AO353_14675 at 3251.764 kb on - strand, within AO353_14675 at 3251.764 kb on - strand, within AO353_14675 at 3251.764 kb on - strand, within AO353_14675 at 3251.837 kb on + strand, within AO353_14675 at 3251.838 kb on - strand, within AO353_14675 at 3251.838 kb on - strand, within AO353_14675 at 3251.951 kb on + strand, within AO353_14675 at 3251.951 kb on + strand, within AO353_14675 at 3251.952 kb on - strand, within AO353_14675 at 3251.990 kb on + strand, within AO353_14675 at 3251.990 kb on + strand, within AO353_14675 at 3251.991 kb on - strand, within AO353_14675 at 3251.991 kb on - strand, within AO353_14675 at 3252.020 kb on + strand, within AO353_14675 at 3252.021 kb on - strand, within AO353_14675 at 3252.021 kb on - strand, within AO353_14675 at 3252.035 kb on + strand, within AO353_14675 at 3252.035 kb on + strand, within AO353_14675 at 3252.035 kb on + strand, within AO353_14675 at 3252.036 kb on - strand, within AO353_14675 at 3252.036 kb on - strand, within AO353_14675 at 3252.036 kb on - strand, within AO353_14675 at 3252.036 kb on - strand, within AO353_14675 at 3252.036 kb on - strand, within AO353_14675 at 3252.036 kb on - strand, within AO353_14675 at 3252.098 kb on + strand, within AO353_14675 at 3252.099 kb on - strand, within AO353_14675 at 3252.114 kb on + strand, within AO353_14675 at 3252.114 kb on + strand, within AO353_14675 at 3252.114 kb on + strand, within AO353_14675 at 3252.114 kb on + strand, within AO353_14675 at 3252.115 kb on - strand, within AO353_14675 at 3252.115 kb on - strand, within AO353_14675 at 3252.170 kb on + strand, within AO353_14675 at 3252.171 kb on - strand, within AO353_14675 at 3252.284 kb on + strand at 3252.284 kb on + strand at 3252.336 kb on + strand at 3252.337 kb on - strand at 3252.337 kb on - strand at 3252.369 kb on + strand at 3252.369 kb on + strand at 3252.369 kb on + strand at 3252.369 kb on + strand at 3252.369 kb on + strand at 3252.370 kb on - strand at 3252.370 kb on - strand at 3252.371 kb on + strand at 3252.371 kb on + strand at 3252.371 kb on + strand at 3252.372 kb on - strand at 3252.372 kb on - strand at 3252.372 kb on - strand at 3252.372 kb on - strand at 3252.456 kb on + strand at 3252.457 kb on - strand at 3252.457 kb on - strand at 3252.637 kb on - strand at 3252.724 kb on - strand at 3252.724 kb on - strand at 3252.724 kb on - strand at 3252.858 kb on + strand at 3252.859 kb on - strand at 3253.475 kb on + strand, within AO353_14685 at 3253.475 kb on + strand, within AO353_14685 at 3253.475 kb on + strand, within AO353_14685 at 3253.476 kb on - strand, within AO353_14685 at 3253.476 kb on - strand, within AO353_14685
Per-strain Table
Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay remove 3,251,678 + AO353_14675 0.37 +1.4 3,251,678 + AO353_14675 0.37 -2.1 3,251,678 + AO353_14675 0.37 +0.2 3,251,678 + AO353_14675 0.37 +1.9 3,251,679 - AO353_14675 0.37 +1.3 3,251,679 - AO353_14675 0.37 -1.7 3,251,699 + AO353_14675 0.39 -0.1 3,251,699 + AO353_14675 0.39 -1.8 3,251,699 + AO353_14675 0.39 -0.3 3,251,699 + AO353_14675 0.39 -1.4 3,251,699 + AO353_14675 0.39 +1.9 3,251,700 - AO353_14675 0.39 -0.2 3,251,700 - AO353_14675 0.39 -0.3 3,251,700 - AO353_14675 0.39 +1.7 3,251,700 - AO353_14675 0.39 +0.7 3,251,715 + AO353_14675 0.40 +1.4 3,251,716 - AO353_14675 0.40 +0.5 3,251,716 - AO353_14675 0.40 -1.9 3,251,716 - AO353_14675 0.40 -0.8 3,251,763 + AO353_14675 0.45 -0.2 3,251,763 + AO353_14675 0.45 -1.0 3,251,763 + AO353_14675 0.45 -2.2 3,251,764 - AO353_14675 0.45 -0.4 3,251,764 - AO353_14675 0.45 -0.2 3,251,764 - AO353_14675 0.45 +1.1 3,251,764 - AO353_14675 0.45 -2.1 3,251,837 + AO353_14675 0.51 +1.9 3,251,838 - AO353_14675 0.51 -1.2 3,251,838 - AO353_14675 0.51 +0.3 3,251,951 + AO353_14675 0.62 -0.9 3,251,951 + AO353_14675 0.62 +1.0 3,251,952 - AO353_14675 0.62 +1.8 3,251,990 + AO353_14675 0.65 -1.7 3,251,990 + AO353_14675 0.65 -0.8 3,251,991 - AO353_14675 0.65 -0.2 3,251,991 - AO353_14675 0.65 -0.4 3,252,020 + AO353_14675 0.68 -1.5 3,252,021 - AO353_14675 0.68 +0.8 3,252,021 - AO353_14675 0.68 -0.2 3,252,035 + AO353_14675 0.69 -1.6 3,252,035 + AO353_14675 0.69 -1.7 3,252,035 + AO353_14675 0.69 +1.6 3,252,036 - AO353_14675 0.69 +0.9 3,252,036 - AO353_14675 0.69 -0.4 3,252,036 - AO353_14675 0.69 -0.8 3,252,036 - AO353_14675 0.69 +1.3 3,252,036 - AO353_14675 0.69 +0.6 3,252,036 - AO353_14675 0.69 -0.4 3,252,098 + AO353_14675 0.75 +0.9 3,252,099 - AO353_14675 0.75 -0.6 3,252,114 + AO353_14675 0.76 -0.8 3,252,114 + AO353_14675 0.76 +3.3 3,252,114 + AO353_14675 0.76 +0.4 3,252,114 + AO353_14675 0.76 -1.2 3,252,115 - AO353_14675 0.77 -0.4 3,252,115 - AO353_14675 0.77 +1.3 3,252,170 + AO353_14675 0.82 -1.6 3,252,171 - AO353_14675 0.82 +0.7 3,252,284 + +0.6 3,252,284 + +2.1 3,252,336 + -0.6 3,252,337 - -0.6 3,252,337 - -0.3 3,252,369 + +1.7 3,252,369 + +2.5 3,252,369 + -0.7 3,252,369 + -2.1 3,252,369 + +0.2 3,252,370 - -0.6 3,252,370 - -0.2 3,252,371 + -2.6 3,252,371 + +1.6 3,252,371 + +1.2 3,252,372 - -2.4 3,252,372 - -0.7 3,252,372 - -1.2 3,252,372 - +1.2 3,252,456 + +0.7 3,252,457 - -1.2 3,252,457 - -1.1 3,252,637 - +1.5 3,252,724 - +0.7 3,252,724 - -0.6 3,252,724 - -2.4 3,252,858 + -1.6 3,252,859 - -0.6 3,253,475 + AO353_14685 0.38 -1.3 3,253,475 + AO353_14685 0.38 +0.9 3,253,475 + AO353_14685 0.38 -2.3 3,253,476 - AO353_14685 0.38 +0.0 3,253,476 - AO353_14685 0.38 +0.6
Or see this region's nucleotide sequence