Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_04450

Experiment: outer cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_04445 and AO353_04450 are separated by 31 nucleotidesAO353_04450 and AO353_04455 overlap by 8 nucleotides AO353_04445: AO353_04445 - GntR family transcriptional regulator, at 955,245 to 955,976 _04445 AO353_04450: AO353_04450 - N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) (from data), at 956,008 to 957,114 _04450 AO353_04455: AO353_04455 - Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) (from data), at 957,107 to 958,117 _04455 Position (kb) 956 957 958Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 955.025 kb on + strandat 955.026 kb on - strandat 955.026 kb on - strandat 955.066 kb on + strandat 955.067 kb on - strandat 955.067 kb on - strandat 955.090 kb on + strandat 955.091 kb on - strandat 955.238 kb on + strandat 955.238 kb on + strandat 955.238 kb on + strandat 955.239 kb on - strandat 955.239 kb on - strandat 955.239 kb on - strandat 955.239 kb on - strandat 955.239 kb on - strandat 955.296 kb on + strandat 955.297 kb on - strandat 955.297 kb on - strandat 955.297 kb on - strandat 955.632 kb on + strand, within AO353_04445at 955.664 kb on + strand, within AO353_04445at 955.664 kb on + strand, within AO353_04445at 955.664 kb on + strand, within AO353_04445at 955.665 kb on - strand, within AO353_04445at 955.752 kb on + strand, within AO353_04445at 955.753 kb on - strand, within AO353_04445at 955.758 kb on + strand, within AO353_04445at 955.758 kb on + strand, within AO353_04445at 955.890 kb on + strand, within AO353_04445at 955.929 kb on + strandat 955.929 kb on + strandat 955.929 kb on + strandat 955.929 kb on + strandat 955.929 kb on + strandat 955.929 kb on + strandat 955.929 kb on + strandat 955.929 kb on + strandat 955.929 kb on + strandat 955.930 kb on - strandat 955.930 kb on - strandat 955.930 kb on - strandat 955.930 kb on - strandat 955.930 kb on - strandat 955.930 kb on - strandat 955.930 kb on - strandat 955.930 kb on - strandat 955.930 kb on - strandat 955.930 kb on - strandat 955.930 kb on - strandat 955.930 kb on - strandat 955.930 kb on - strandat 955.930 kb on - strandat 955.944 kb on + strandat 955.944 kb on + strandat 955.945 kb on - strandat 955.945 kb on - strandat 955.947 kb on + strandat 955.948 kb on - strandat 955.948 kb on - strandat 955.948 kb on - strandat 956.128 kb on + strand, within AO353_04450at 956.129 kb on - strand, within AO353_04450at 956.374 kb on + strand, within AO353_04450at 956.374 kb on + strand, within AO353_04450at 956.374 kb on + strand, within AO353_04450at 956.374 kb on + strand, within AO353_04450at 956.374 kb on + strand, within AO353_04450at 956.374 kb on + strand, within AO353_04450at 956.374 kb on + strand, within AO353_04450at 956.374 kb on + strand, within AO353_04450at 956.374 kb on + strand, within AO353_04450at 956.375 kb on - strand, within AO353_04450at 956.375 kb on - strand, within AO353_04450at 956.375 kb on - strand, within AO353_04450at 956.375 kb on - strand, within AO353_04450at 956.375 kb on - strand, within AO353_04450at 956.375 kb on - strand, within AO353_04450at 956.375 kb on - strand, within AO353_04450at 956.446 kb on + strand, within AO353_04450at 956.446 kb on + strand, within AO353_04450at 956.446 kb on + strand, within AO353_04450at 956.447 kb on - strand, within AO353_04450at 956.569 kb on + strand, within AO353_04450at 956.569 kb on + strand, within AO353_04450at 956.569 kb on + strand, within AO353_04450at 956.570 kb on - strand, within AO353_04450at 956.570 kb on - strand, within AO353_04450at 956.623 kb on + strand, within AO353_04450at 956.623 kb on + strand, within AO353_04450at 956.623 kb on + strand, within AO353_04450at 956.623 kb on + strand, within AO353_04450at 956.623 kb on + strand, within AO353_04450at 956.623 kb on + strand, within AO353_04450at 956.623 kb on + strand, within AO353_04450at 956.623 kb on + strand, within AO353_04450at 956.623 kb on + strand, within AO353_04450at 956.623 kb on + strand, within AO353_04450at 956.623 kb on + strand, within AO353_04450at 956.623 kb on + strand, within AO353_04450at 956.623 kb on + strand, within AO353_04450at 956.623 kb on + strand, within AO353_04450at 956.624 kb on - strand, within AO353_04450at 956.624 kb on - strand, within AO353_04450at 956.624 kb on - strand, within AO353_04450at 956.624 kb on - strand, within AO353_04450at 956.624 kb on - strand, within AO353_04450at 956.624 kb on - strand, within AO353_04450at 956.624 kb on - strand, within AO353_04450at 956.624 kb on - strand, within AO353_04450at 956.624 kb on - strand, within AO353_04450at 956.624 kb on - strand, within AO353_04450at 956.626 kb on - strand, within AO353_04450at 956.692 kb on + strand, within AO353_04450at 956.692 kb on + strand, within AO353_04450at 956.692 kb on + strand, within AO353_04450at 956.693 kb on - strand, within AO353_04450at 956.693 kb on - strand, within AO353_04450at 956.750 kb on + strand, within AO353_04450at 956.751 kb on - strand, within AO353_04450at 956.770 kb on + strand, within AO353_04450at 956.770 kb on + strand, within AO353_04450at 956.770 kb on + strand, within AO353_04450at 956.770 kb on + strand, within AO353_04450at 956.771 kb on - strand, within AO353_04450at 956.771 kb on - strand, within AO353_04450at 956.771 kb on - strand, within AO353_04450at 956.771 kb on - strand, within AO353_04450at 956.818 kb on + strand, within AO353_04450at 956.818 kb on + strand, within AO353_04450at 956.818 kb on + strand, within AO353_04450at 956.818 kb on + strand, within AO353_04450at 956.818 kb on + strand, within AO353_04450at 956.818 kb on + strand, within AO353_04450at 956.818 kb on + strand, within AO353_04450at 956.819 kb on - strand, within AO353_04450at 956.987 kb on - strand, within AO353_04450at 956.987 kb on - strand, within AO353_04450at 956.987 kb on - strand, within AO353_04450at 957.132 kb on - strandat 957.260 kb on + strand, within AO353_04455at 957.260 kb on + strand, within AO353_04455at 957.260 kb on + strand, within AO353_04455at 957.260 kb on + strand, within AO353_04455at 957.260 kb on + strand, within AO353_04455at 957.260 kb on + strand, within AO353_04455at 957.261 kb on - strand, within AO353_04455at 957.261 kb on - strandat 957.261 kb on - strand, within AO353_04455at 957.270 kb on - strand, within AO353_04455at 957.292 kb on + strand, within AO353_04455at 957.292 kb on + strand, within AO353_04455at 957.293 kb on - strand, within AO353_04455at 957.684 kb on + strand, within AO353_04455at 957.684 kb on + strand, within AO353_04455at 957.684 kb on + strand, within AO353_04455at 957.684 kb on + strand, within AO353_04455at 957.685 kb on - strand, within AO353_04455at 957.685 kb on - strand, within AO353_04455at 957.841 kb on + strand, within AO353_04455at 957.841 kb on + strand, within AO353_04455at 957.842 kb on - strand, within AO353_04455at 957.845 kb on + strand, within AO353_04455at 957.845 kb on + strand, within AO353_04455at 957.845 kb on + strand, within AO353_04455at 957.845 kb on + strand, within AO353_04455at 957.846 kb on - strand, within AO353_04455at 957.846 kb on - strand, within AO353_04455at 957.933 kb on + strand, within AO353_04455at 957.934 kb on - strand, within AO353_04455at 958.031 kb on + strandat 958.031 kb on + strandat 958.031 kb on + strandat 958.031 kb on + strandat 958.031 kb on + strandat 958.031 kb on + strandat 958.031 kb on + strandat 958.031 kb on + strandat 958.031 kb on + strandat 958.031 kb on + strandat 958.031 kb on + strandat 958.031 kb on + strandat 958.031 kb on + strandat 958.032 kb on - strandat 958.032 kb on - strandat 958.032 kb on - strandat 958.032 kb on - strandat 958.032 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay
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955,025 + -1.9
955,026 - +0.6
955,026 - +1.6
955,066 + -2.0
955,067 - -0.0
955,067 - -0.1
955,090 + -1.1
955,091 - +0.4
955,238 + +1.0
955,238 + -1.4
955,238 + -1.5
955,239 - -0.5
955,239 - +0.9
955,239 - +0.4
955,239 - -0.7
955,239 - -1.0
955,296 + -1.6
955,297 - -2.1
955,297 - +0.2
955,297 - -0.1
955,632 + AO353_04445 0.53 +1.2
955,664 + AO353_04445 0.57 +2.4
955,664 + AO353_04445 0.57 -1.6
955,664 + AO353_04445 0.57 +0.1
955,665 - AO353_04445 0.57 +0.5
955,752 + AO353_04445 0.69 -0.0
955,753 - AO353_04445 0.69 -0.6
955,758 + AO353_04445 0.70 +0.1
955,758 + AO353_04445 0.70 -0.4
955,890 + AO353_04445 0.88 +3.1
955,929 + +0.9
955,929 + +1.1
955,929 + -1.8
955,929 + -0.1
955,929 + +0.5
955,929 + -0.3
955,929 + +0.8
955,929 + +1.5
955,929 + +1.4
955,930 - +1.2
955,930 - -2.3
955,930 - +0.4
955,930 - +1.0
955,930 - +1.4
955,930 - +1.0
955,930 - -0.9
955,930 - -0.4
955,930 - -1.8
955,930 - +0.6
955,930 - -1.2
955,930 - +2.3
955,930 - -0.6
955,930 - +0.8
955,944 + -1.1
955,944 + +3.2
955,945 - +1.2
955,945 - -2.1
955,947 + +1.6
955,948 - +1.7
955,948 - +0.2
955,948 - -1.6
956,128 + AO353_04450 0.11 +0.1
956,129 - AO353_04450 0.11 +1.2
956,374 + AO353_04450 0.33 +0.5
956,374 + AO353_04450 0.33 -0.7
956,374 + AO353_04450 0.33 +0.5
956,374 + AO353_04450 0.33 -2.5
956,374 + AO353_04450 0.33 -1.9
956,374 + AO353_04450 0.33 -0.7
956,374 + AO353_04450 0.33 +0.1
956,374 + AO353_04450 0.33 -0.8
956,374 + AO353_04450 0.33 -2.8
956,375 - AO353_04450 0.33 -1.1
956,375 - AO353_04450 0.33 -1.4
956,375 - AO353_04450 0.33 +1.1
956,375 - AO353_04450 0.33 -1.4
956,375 - AO353_04450 0.33 +3.3
956,375 - AO353_04450 0.33 +0.1
956,375 - AO353_04450 0.33 -0.2
956,446 + AO353_04450 0.40 -1.6
956,446 + AO353_04450 0.40 -0.6
956,446 + AO353_04450 0.40 -1.7
956,447 - AO353_04450 0.40 -0.4
956,569 + AO353_04450 0.51 -0.8
956,569 + AO353_04450 0.51 -1.6
956,569 + AO353_04450 0.51 +1.3
956,570 - AO353_04450 0.51 -0.8
956,570 - AO353_04450 0.51 -1.2
956,623 + AO353_04450 0.56 -0.2
956,623 + AO353_04450 0.56 -2.0
956,623 + AO353_04450 0.56 -1.1
956,623 + AO353_04450 0.56 -2.0
956,623 + AO353_04450 0.56 -0.7
956,623 + AO353_04450 0.56 -1.3
956,623 + AO353_04450 0.56 -2.2
956,623 + AO353_04450 0.56 -0.8
956,623 + AO353_04450 0.56 +1.0
956,623 + AO353_04450 0.56 -0.6
956,623 + AO353_04450 0.56 -2.2
956,623 + AO353_04450 0.56 -1.2
956,623 + AO353_04450 0.56 +0.8
956,623 + AO353_04450 0.56 -0.6
956,624 - AO353_04450 0.56 -0.5
956,624 - AO353_04450 0.56 -2.2
956,624 - AO353_04450 0.56 +1.0
956,624 - AO353_04450 0.56 -1.4
956,624 - AO353_04450 0.56 +0.8
956,624 - AO353_04450 0.56 -2.1
956,624 - AO353_04450 0.56 -2.3
956,624 - AO353_04450 0.56 -1.5
956,624 - AO353_04450 0.56 -1.7
956,624 - AO353_04450 0.56 -1.0
956,626 - AO353_04450 0.56 +1.9
956,692 + AO353_04450 0.62 -0.9
956,692 + AO353_04450 0.62 +0.1
956,692 + AO353_04450 0.62 +0.1
956,693 - AO353_04450 0.62 -2.9
956,693 - AO353_04450 0.62 -1.2
956,750 + AO353_04450 0.67 +1.5
956,751 - AO353_04450 0.67 -1.1
956,770 + AO353_04450 0.69 -3.2
956,770 + AO353_04450 0.69 -0.3
956,770 + AO353_04450 0.69 -2.6
956,770 + AO353_04450 0.69 -1.9
956,771 - AO353_04450 0.69 +1.0
956,771 - AO353_04450 0.69 +0.3
956,771 - AO353_04450 0.69 -1.3
956,771 - AO353_04450 0.69 -2.9
956,818 + AO353_04450 0.73 -1.0
956,818 + AO353_04450 0.73 -2.6
956,818 + AO353_04450 0.73 -1.7
956,818 + AO353_04450 0.73 +0.1
956,818 + AO353_04450 0.73 -0.1
956,818 + AO353_04450 0.73 -0.9
956,818 + AO353_04450 0.73 -2.9
956,819 - AO353_04450 0.73 -0.1
956,987 - AO353_04450 0.88 +0.1
956,987 - AO353_04450 0.88 -1.7
956,987 - AO353_04450 0.88 -2.1
957,132 - -0.4
957,260 + AO353_04455 0.15 -1.6
957,260 + AO353_04455 0.15 -0.4
957,260 + AO353_04455 0.15 -1.2
957,260 + AO353_04455 0.15 +3.5
957,260 + AO353_04455 0.15 -2.1
957,260 + AO353_04455 0.15 +1.9
957,261 - AO353_04455 0.15 +1.0
957,261 - +1.9
957,261 - AO353_04455 0.15 -2.4
957,270 - AO353_04455 0.16 -0.4
957,292 + AO353_04455 0.18 -0.9
957,292 + AO353_04455 0.18 -2.2
957,293 - AO353_04455 0.18 -1.8
957,684 + AO353_04455 0.57 -0.8
957,684 + AO353_04455 0.57 -0.0
957,684 + AO353_04455 0.57 -0.3
957,684 + AO353_04455 0.57 +1.1
957,685 - AO353_04455 0.57 -1.4
957,685 - AO353_04455 0.57 -0.9
957,841 + AO353_04455 0.73 +2.7
957,841 + AO353_04455 0.73 +0.3
957,842 - AO353_04455 0.73 -0.6
957,845 + AO353_04455 0.73 +0.3
957,845 + AO353_04455 0.73 +2.0
957,845 + AO353_04455 0.73 -0.1
957,845 + AO353_04455 0.73 -1.3
957,846 - AO353_04455 0.73 +0.7
957,846 - AO353_04455 0.73 -1.4
957,933 + AO353_04455 0.82 +3.4
957,934 - AO353_04455 0.82 -0.8
958,031 + +1.5
958,031 + -0.9
958,031 + +0.4
958,031 + -1.2
958,031 + -1.0
958,031 + +1.1
958,031 + -0.1
958,031 + +0.7
958,031 + -1.4
958,031 + -2.3
958,031 + -0.3
958,031 + +1.4
958,031 + +0.3
958,032 - -1.6
958,032 - -0.5
958,032 - +0.9
958,032 - +0.6
958,032 - +2.1

Or see this region's nucleotide sequence