Experiment: outer cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_04205 and AO353_04210 are separated by 110 nucleotides AO353_04210 and AO353_04215 are separated by 320 nucleotides
AO353_04205: AO353_04205 - lysine--tRNA ligase, at 902,129 to 903,631
_04205
AO353_04210: AO353_04210 - peptide chain release factor 2, at 903,742 to 904,623
_04210
AO353_04215: AO353_04215 - diguanylate cyclase, at 904,944 to 905,945
_04215
Position (kb) 903
904
905 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 904.882 kb on - strand at 904.882 kb on - strand at 904.887 kb on - strand at 904.887 kb on - strand at 904.887 kb on - strand at 904.887 kb on - strand at 904.887 kb on - strand at 904.887 kb on - strand at 904.987 kb on + strand at 904.987 kb on + strand at 904.987 kb on + strand at 904.987 kb on + strand at 904.988 kb on - strand at 904.988 kb on - strand at 904.988 kb on - strand at 904.988 kb on - strand at 905.024 kb on - strand at 905.095 kb on - strand, within AO353_04215 at 905.171 kb on + strand, within AO353_04215 at 905.172 kb on - strand, within AO353_04215 at 905.172 kb on - strand, within AO353_04215 at 905.172 kb on - strand, within AO353_04215 at 905.308 kb on + strand, within AO353_04215 at 905.308 kb on + strand, within AO353_04215 at 905.308 kb on + strand, within AO353_04215 at 905.308 kb on + strand, within AO353_04215 at 905.308 kb on + strand, within AO353_04215 at 905.309 kb on - strand, within AO353_04215 at 905.309 kb on - strand, within AO353_04215 at 905.309 kb on - strand, within AO353_04215 at 905.309 kb on - strand, within AO353_04215 at 905.309 kb on - strand, within AO353_04215 at 905.320 kb on + strand, within AO353_04215 at 905.320 kb on + strand, within AO353_04215 at 905.321 kb on - strand, within AO353_04215 at 905.321 kb on - strand, within AO353_04215 at 905.392 kb on + strand, within AO353_04215 at 905.392 kb on + strand, within AO353_04215 at 905.392 kb on + strand, within AO353_04215 at 905.393 kb on - strand, within AO353_04215 at 905.393 kb on - strand, within AO353_04215 at 905.393 kb on - strand, within AO353_04215 at 905.393 kb on - strand, within AO353_04215 at 905.393 kb on - strand, within AO353_04215 at 905.414 kb on + strand, within AO353_04215 at 905.536 kb on + strand, within AO353_04215 at 905.536 kb on + strand, within AO353_04215 at 905.536 kb on + strand, within AO353_04215 at 905.536 kb on + strand, within AO353_04215 at 905.536 kb on + strand, within AO353_04215 at 905.536 kb on + strand, within AO353_04215 at 905.536 kb on + strand, within AO353_04215 at 905.536 kb on + strand, within AO353_04215 at 905.536 kb on + strand, within AO353_04215 at 905.536 kb on + strand, within AO353_04215 at 905.536 kb on + strand, within AO353_04215 at 905.536 kb on + strand, within AO353_04215 at 905.537 kb on - strand, within AO353_04215 at 905.537 kb on - strand, within AO353_04215 at 905.537 kb on - strand, within AO353_04215 at 905.537 kb on - strand, within AO353_04215 at 905.537 kb on - strand, within AO353_04215 at 905.537 kb on - strand, within AO353_04215 at 905.537 kb on - strand, within AO353_04215 at 905.537 kb on - strand, within AO353_04215 at 905.599 kb on + strand, within AO353_04215
Per-strain Table
Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay remove 904,882 - +0.6 904,882 - +1.8 904,887 - +0.6 904,887 - -0.6 904,887 - +1.2 904,887 - -0.4 904,887 - +1.2 904,887 - -1.3 904,987 + +0.9 904,987 + -0.8 904,987 + +0.6 904,987 + -0.1 904,988 - -0.3 904,988 - +0.1 904,988 - -0.6 904,988 - +1.8 905,024 - -0.1 905,095 - AO353_04215 0.15 -0.7 905,171 + AO353_04215 0.23 +1.3 905,172 - AO353_04215 0.23 +0.9 905,172 - AO353_04215 0.23 +0.4 905,172 - AO353_04215 0.23 -1.9 905,308 + AO353_04215 0.36 -0.6 905,308 + AO353_04215 0.36 -1.8 905,308 + AO353_04215 0.36 -1.3 905,308 + AO353_04215 0.36 -2.2 905,308 + AO353_04215 0.36 -0.1 905,309 - AO353_04215 0.36 +0.4 905,309 - AO353_04215 0.36 -0.2 905,309 - AO353_04215 0.36 -0.0 905,309 - AO353_04215 0.36 -0.4 905,309 - AO353_04215 0.36 -0.1 905,320 + AO353_04215 0.38 -0.6 905,320 + AO353_04215 0.38 -1.6 905,321 - AO353_04215 0.38 +1.2 905,321 - AO353_04215 0.38 -0.1 905,392 + AO353_04215 0.45 -0.5 905,392 + AO353_04215 0.45 +1.2 905,392 + AO353_04215 0.45 +0.9 905,393 - AO353_04215 0.45 -0.8 905,393 - AO353_04215 0.45 -1.2 905,393 - AO353_04215 0.45 +0.6 905,393 - AO353_04215 0.45 +2.0 905,393 - AO353_04215 0.45 -1.1 905,414 + AO353_04215 0.47 +0.3 905,536 + AO353_04215 0.59 +3.7 905,536 + AO353_04215 0.59 +3.4 905,536 + AO353_04215 0.59 +1.4 905,536 + AO353_04215 0.59 -0.8 905,536 + AO353_04215 0.59 -0.1 905,536 + AO353_04215 0.59 -0.1 905,536 + AO353_04215 0.59 -0.2 905,536 + AO353_04215 0.59 -1.4 905,536 + AO353_04215 0.59 +0.4 905,536 + AO353_04215 0.59 +0.4 905,536 + AO353_04215 0.59 +1.9 905,536 + AO353_04215 0.59 +0.3 905,537 - AO353_04215 0.59 -0.4 905,537 - AO353_04215 0.59 -1.4 905,537 - AO353_04215 0.59 +1.3 905,537 - AO353_04215 0.59 +2.7 905,537 - AO353_04215 0.59 -1.6 905,537 - AO353_04215 0.59 +0.3 905,537 - AO353_04215 0.59 -0.7 905,537 - AO353_04215 0.59 +1.8 905,599 + AO353_04215 0.65 -0.6
Or see this region's nucleotide sequence