Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_03790

Experiment: outer cut, LB soft agar motility assay

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_03780 and AO353_03785 are separated by 28 nucleotidesAO353_03785 and AO353_03790 overlap by 8 nucleotidesAO353_03790 and AO353_03795 are separated by 491 nucleotides AO353_03780: AO353_03780 - enoyl-CoA hydratase, at 807,226 to 807,975 _03780 AO353_03785: AO353_03785 - hypothetical protein, at 808,004 to 808,939 _03785 AO353_03790: AO353_03790 - hypothetical protein, at 808,932 to 810,038 _03790 AO353_03795: AO353_03795 - fumarate hydratase, at 810,530 to 812,053 _03795 Position (kb) 808 809 810 811Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 808.062 kb on + strandat 808.062 kb on + strandat 808.062 kb on + strandat 808.063 kb on - strandat 808.063 kb on - strandat 808.109 kb on + strand, within AO353_03785at 808.110 kb on - strand, within AO353_03785at 808.110 kb on - strand, within AO353_03785at 808.110 kb on - strand, within AO353_03785at 808.110 kb on - strand, within AO353_03785at 808.110 kb on - strand, within AO353_03785at 808.110 kb on - strand, within AO353_03785at 808.189 kb on + strand, within AO353_03785at 808.189 kb on + strand, within AO353_03785at 808.236 kb on + strand, within AO353_03785at 808.236 kb on + strand, within AO353_03785at 808.236 kb on + strand, within AO353_03785at 808.236 kb on + strand, within AO353_03785at 808.237 kb on - strand, within AO353_03785at 808.237 kb on - strand, within AO353_03785at 808.237 kb on - strand, within AO353_03785at 808.237 kb on - strand, within AO353_03785at 808.237 kb on - strand, within AO353_03785at 808.237 kb on - strand, within AO353_03785at 808.269 kb on - strand, within AO353_03785at 808.386 kb on + strand, within AO353_03785at 808.386 kb on + strand, within AO353_03785at 808.387 kb on - strand, within AO353_03785at 808.387 kb on - strand, within AO353_03785at 808.387 kb on - strand, within AO353_03785at 808.387 kb on - strand, within AO353_03785at 808.387 kb on - strand, within AO353_03785at 808.387 kb on - strand, within AO353_03785at 808.534 kb on - strand, within AO353_03785at 808.584 kb on + strand, within AO353_03785at 808.689 kb on - strand, within AO353_03785at 808.694 kb on + strand, within AO353_03785at 808.694 kb on + strand, within AO353_03785at 808.695 kb on - strand, within AO353_03785at 808.845 kb on + strand, within AO353_03785at 808.928 kb on + strandat 808.928 kb on + strandat 808.928 kb on + strandat 808.928 kb on + strandat 808.928 kb on + strandat 808.928 kb on + strandat 808.928 kb on + strandat 808.928 kb on + strandat 808.928 kb on + strandat 808.929 kb on - strandat 808.929 kb on - strandat 808.929 kb on - strandat 808.929 kb on - strandat 808.929 kb on - strandat 808.929 kb on - strandat 808.929 kb on - strandat 808.929 kb on - strandat 808.993 kb on + strandat 809.208 kb on + strand, within AO353_03790at 809.208 kb on + strand, within AO353_03790at 809.208 kb on + strand, within AO353_03790at 809.284 kb on + strand, within AO353_03790at 809.284 kb on + strand, within AO353_03790at 809.284 kb on + strand, within AO353_03790at 809.284 kb on + strand, within AO353_03790at 809.284 kb on + strand, within AO353_03790at 809.284 kb on + strand, within AO353_03790at 809.284 kb on + strand, within AO353_03790at 809.284 kb on + strandat 809.284 kb on + strand, within AO353_03790at 809.284 kb on + strand, within AO353_03790at 809.284 kb on + strand, within AO353_03790at 809.284 kb on + strand, within AO353_03790at 809.284 kb on + strand, within AO353_03790at 809.284 kb on + strand, within AO353_03790at 809.284 kb on + strand, within AO353_03790at 809.284 kb on + strand, within AO353_03790at 809.284 kb on + strand, within AO353_03790at 809.284 kb on + strand, within AO353_03790at 809.284 kb on + strand, within AO353_03790at 809.285 kb on - strand, within AO353_03790at 809.285 kb on - strand, within AO353_03790at 809.285 kb on - strand, within AO353_03790at 809.285 kb on - strand, within AO353_03790at 809.285 kb on - strand, within AO353_03790at 809.285 kb on - strand, within AO353_03790at 809.285 kb on - strand, within AO353_03790at 809.285 kb on - strand, within AO353_03790at 809.285 kb on - strand, within AO353_03790at 809.308 kb on + strand, within AO353_03790at 809.308 kb on + strand, within AO353_03790at 809.308 kb on + strand, within AO353_03790at 809.309 kb on - strand, within AO353_03790at 809.342 kb on + strand, within AO353_03790at 809.383 kb on - strand, within AO353_03790at 809.536 kb on + strand, within AO353_03790at 809.536 kb on + strand, within AO353_03790at 809.536 kb on + strand, within AO353_03790at 809.536 kb on + strand, within AO353_03790at 809.537 kb on - strand, within AO353_03790at 809.537 kb on - strand, within AO353_03790at 809.538 kb on + strand, within AO353_03790at 809.538 kb on + strand, within AO353_03790at 809.538 kb on + strand, within AO353_03790at 809.538 kb on + strand, within AO353_03790at 809.538 kb on + strand, within AO353_03790at 809.538 kb on + strand, within AO353_03790at 809.538 kb on + strand, within AO353_03790at 809.538 kb on + strand, within AO353_03790at 809.539 kb on - strand, within AO353_03790at 809.539 kb on - strand, within AO353_03790at 809.539 kb on - strand, within AO353_03790at 809.539 kb on - strand, within AO353_03790at 809.539 kb on - strand, within AO353_03790at 809.539 kb on - strandat 809.539 kb on - strand, within AO353_03790at 809.539 kb on - strand, within AO353_03790at 809.539 kb on - strand, within AO353_03790at 809.561 kb on + strand, within AO353_03790at 809.725 kb on + strand, within AO353_03790at 809.725 kb on + strand, within AO353_03790at 809.725 kb on + strand, within AO353_03790at 809.725 kb on + strand, within AO353_03790at 809.726 kb on - strand, within AO353_03790at 809.726 kb on - strand, within AO353_03790at 809.883 kb on + strand, within AO353_03790at 809.883 kb on + strand, within AO353_03790at 809.884 kb on - strand, within AO353_03790at 809.884 kb on - strand, within AO353_03790at 809.884 kb on - strand, within AO353_03790at 809.929 kb on + strandat 809.930 kb on - strandat 809.930 kb on - strandat 809.965 kb on - strandat 809.965 kb on - strandat 809.965 kb on - strandat 809.977 kb on + strandat 809.977 kb on + strandat 809.977 kb on + strandat 809.977 kb on + strandat 809.977 kb on + strandat 809.977 kb on + strandat 809.977 kb on + strandat 809.977 kb on + strandat 809.977 kb on + strandat 809.978 kb on - strandat 809.978 kb on - strandat 809.978 kb on - strandat 809.978 kb on - strandat 809.978 kb on - strandat 809.996 kb on + strandat 809.997 kb on - strandat 810.070 kb on + strandat 810.070 kb on + strandat 810.070 kb on + strandat 810.081 kb on + strandat 810.106 kb on + strandat 810.106 kb on + strandat 810.148 kb on - strandat 810.148 kb on - strandat 810.273 kb on + strandat 810.273 kb on + strandat 810.274 kb on - strandat 810.274 kb on - strandat 810.400 kb on + strandat 810.402 kb on + strandat 810.402 kb on + strandat 810.403 kb on - strandat 810.494 kb on + strandat 810.494 kb on + strandat 810.494 kb on + strandat 810.494 kb on + strandat 810.495 kb on - strandat 810.514 kb on + strandat 810.515 kb on - strandat 810.593 kb on + strandat 810.596 kb on + strandat 810.596 kb on + strandat 810.763 kb on - strand, within AO353_03795at 810.763 kb on - strand, within AO353_03795at 810.766 kb on + strand, within AO353_03795at 810.767 kb on - strand, within AO353_03795at 810.767 kb on - strand, within AO353_03795at 810.767 kb on - strand, within AO353_03795

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay
remove
808,062 + +0.2
808,062 + -1.4
808,062 + +1.2
808,063 - -2.0
808,063 - -1.2
808,109 + AO353_03785 0.11 -0.0
808,110 - AO353_03785 0.11 +1.5
808,110 - AO353_03785 0.11 +0.9
808,110 - AO353_03785 0.11 -1.7
808,110 - AO353_03785 0.11 +0.8
808,110 - AO353_03785 0.11 +0.2
808,110 - AO353_03785 0.11 +0.4
808,189 + AO353_03785 0.20 +0.6
808,189 + AO353_03785 0.20 -0.6
808,236 + AO353_03785 0.25 -0.0
808,236 + AO353_03785 0.25 -0.5
808,236 + AO353_03785 0.25 +0.6
808,236 + AO353_03785 0.25 +1.3
808,237 - AO353_03785 0.25 +0.9
808,237 - AO353_03785 0.25 +2.4
808,237 - AO353_03785 0.25 +1.1
808,237 - AO353_03785 0.25 -0.2
808,237 - AO353_03785 0.25 +0.3
808,237 - AO353_03785 0.25 +0.9
808,269 - AO353_03785 0.28 +1.1
808,386 + AO353_03785 0.41 +1.6
808,386 + AO353_03785 0.41 -1.4
808,387 - AO353_03785 0.41 +4.2
808,387 - AO353_03785 0.41 -1.5
808,387 - AO353_03785 0.41 +2.1
808,387 - AO353_03785 0.41 +0.8
808,387 - AO353_03785 0.41 +0.8
808,387 - AO353_03785 0.41 -0.5
808,534 - AO353_03785 0.57 -0.4
808,584 + AO353_03785 0.62 +1.4
808,689 - AO353_03785 0.73 +0.3
808,694 + AO353_03785 0.74 -1.3
808,694 + AO353_03785 0.74 -0.6
808,695 - AO353_03785 0.74 -2.6
808,845 + AO353_03785 0.90 -0.1
808,928 + -2.2
808,928 + +0.9
808,928 + +1.4
808,928 + +0.6
808,928 + -0.6
808,928 + -0.2
808,928 + +3.6
808,928 + +2.9
808,928 + -0.8
808,929 - -0.9
808,929 - -0.5
808,929 - +0.1
808,929 - -2.0
808,929 - +0.3
808,929 - -1.1
808,929 - +1.0
808,929 - +0.1
808,993 + +3.2
809,208 + AO353_03790 0.25 +2.1
809,208 + AO353_03790 0.25 -1.3
809,208 + AO353_03790 0.25 +2.2
809,284 + AO353_03790 0.32 -0.3
809,284 + AO353_03790 0.32 -2.1
809,284 + AO353_03790 0.32 -0.9
809,284 + AO353_03790 0.32 +0.2
809,284 + AO353_03790 0.32 +4.2
809,284 + AO353_03790 0.32 +3.6
809,284 + AO353_03790 0.32 +0.7
809,284 + +4.5
809,284 + AO353_03790 0.32 +2.4
809,284 + AO353_03790 0.32 +1.4
809,284 + AO353_03790 0.32 +1.9
809,284 + AO353_03790 0.32 -2.3
809,284 + AO353_03790 0.32 +2.0
809,284 + AO353_03790 0.32 +1.2
809,284 + AO353_03790 0.32 -1.2
809,284 + AO353_03790 0.32 +0.2
809,284 + AO353_03790 0.32 +3.0
809,284 + AO353_03790 0.32 +1.2
809,284 + AO353_03790 0.32 +3.9
809,285 - AO353_03790 0.32 +4.3
809,285 - AO353_03790 0.32 +1.3
809,285 - AO353_03790 0.32 +1.0
809,285 - AO353_03790 0.32 -1.2
809,285 - AO353_03790 0.32 -0.1
809,285 - AO353_03790 0.32 +1.4
809,285 - AO353_03790 0.32 +0.3
809,285 - AO353_03790 0.32 -1.4
809,285 - AO353_03790 0.32 -0.8
809,308 + AO353_03790 0.34 +1.7
809,308 + AO353_03790 0.34 +2.1
809,308 + AO353_03790 0.34 +2.7
809,309 - AO353_03790 0.34 +1.9
809,342 + AO353_03790 0.37 -0.7
809,383 - AO353_03790 0.41 +1.8
809,536 + AO353_03790 0.55 -0.1
809,536 + AO353_03790 0.55 -0.1
809,536 + AO353_03790 0.55 -0.7
809,536 + AO353_03790 0.55 +2.4
809,537 - AO353_03790 0.55 +0.5
809,537 - AO353_03790 0.55 +0.5
809,538 + AO353_03790 0.55 +0.6
809,538 + AO353_03790 0.55 -1.6
809,538 + AO353_03790 0.55 -0.4
809,538 + AO353_03790 0.55 -0.4
809,538 + AO353_03790 0.55 +1.4
809,538 + AO353_03790 0.55 +2.8
809,538 + AO353_03790 0.55 -0.1
809,538 + AO353_03790 0.55 +1.7
809,539 - AO353_03790 0.55 +1.4
809,539 - AO353_03790 0.55 +1.9
809,539 - AO353_03790 0.55 +2.6
809,539 - AO353_03790 0.55 +0.8
809,539 - AO353_03790 0.55 -0.1
809,539 - +1.9
809,539 - AO353_03790 0.55 +1.9
809,539 - AO353_03790 0.55 +0.4
809,539 - AO353_03790 0.55 +1.4
809,561 + AO353_03790 0.57 +2.2
809,725 + AO353_03790 0.72 +4.7
809,725 + AO353_03790 0.72 +3.8
809,725 + AO353_03790 0.72 -1.5
809,725 + AO353_03790 0.72 -0.9
809,726 - AO353_03790 0.72 -1.0
809,726 - AO353_03790 0.72 +0.1
809,883 + AO353_03790 0.86 -0.7
809,883 + AO353_03790 0.86 -0.0
809,884 - AO353_03790 0.86 -0.9
809,884 - AO353_03790 0.86 -0.3
809,884 - AO353_03790 0.86 +1.5
809,929 + +0.9
809,930 - +2.0
809,930 - +1.2
809,965 - -1.2
809,965 - +1.3
809,965 - +3.5
809,977 + -1.6
809,977 + -0.6
809,977 + +1.7
809,977 + -1.4
809,977 + -1.6
809,977 + +0.8
809,977 + +0.3
809,977 + +3.3
809,977 + +3.6
809,978 - +0.1
809,978 - +2.1
809,978 - -0.4
809,978 - +1.2
809,978 - +0.7
809,996 + -2.0
809,997 - +2.1
810,070 + +1.7
810,070 + -0.1
810,070 + +3.0
810,081 + +2.4
810,106 + -0.6
810,106 + +2.0
810,148 - -1.0
810,148 - +1.5
810,273 + -0.4
810,273 + -1.4
810,274 - -0.5
810,274 - -2.4
810,400 + -0.5
810,402 + +0.6
810,402 + +3.1
810,403 - -0.3
810,494 + +0.6
810,494 + -2.4
810,494 + -0.3
810,494 + -0.7
810,495 - +1.3
810,514 + +1.9
810,515 - -2.1
810,593 + -1.3
810,596 + -0.8
810,596 + -2.3
810,763 - AO353_03795 0.15 +0.1
810,763 - AO353_03795 0.15 +1.3
810,766 + AO353_03795 0.15 -0.8
810,767 - AO353_03795 0.16 -1.3
810,767 - AO353_03795 0.16 -1.1
810,767 - AO353_03795 0.16 -1.0

Or see this region's nucleotide sequence